Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011986

Physical Location & Seq

Genomic Coordinates Forward (+)

12758934 .. 12759524

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g09580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGGGCACTCAAACGTCTGGAACTCGCACCCTAAGAACTACGGCCCTGGATCCCGCACCTGTCGCGTGTGTGGAAACCCTCATGGTTTGATCAGGAAGTACGGCCTCATGTGCTGCAGGCAGTGTTTCCGCAGCAATGCCAAGGAGATCGGCTTCATTAAGGTAAAGCCTTCGAGAACCCTTAGCTACCGATCATTTTATGATTCCATTTACGGAGCTGAGCTTACACCATTTCCACTATGTAATCTGGTTTCATTTTTCAAACTCTATGGTTGCAGTACCGTTAAATGGCAGATATTCAACATTCCAGGACTCATGTTTTGGCCCAAGAAGAGTAGTATTGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008270 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S14

Protein Analysis

117

Amino Acids

13.27

Weight (kDa)

9.81

Isoelectric Point (pI)

29.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43980 AT3G44010 AT3G44010 AT4G33865
malus_domestica	MD05G1000600.v1.1 MD05G1097200.v1.1 MD08G1087300.v1.1 MD10G1103200.v1.1 MD15G1072100.v1.1
prunus_persica	Prupe.1G424800_v2.0.a1 Prupe.8G141900_v2.0.a1
pyrus_communis	pycom05g09580
rosa_chinensis	RchiOBHm_Chr6g0253421 RchiOBHm_Chr6g0309341
rosa_multiflora	Rmu_sc0008375.1_g000002
rosa_rugosa	Rorug05G0111300 Rorug06G0371400
rosa_wichuraiana	Rw6G005310 Rw6G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	66
AciI	CCGC	2 cut(s)	55, 130
AclWI	GGATC	2 cut(s)	45, 58
AfaI	GTAC	2 cut(s)	101, 280
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	262, 301
AjnI	CCWGG	2 cut(s)	46, 307
AluBI	AGCT	3 cut(s)	186, 218, 223
AluI	AGCT	3 cut(s)	186, 218, 223
AlwI	GGATC	2 cut(s)	45, 58
AoxI	GGCC	3 cut(s)	43, 103, 323
ApeKI	GCWGC	2 cut(s)	114, 132
ArsI	GACNNNNNNTTYG	2 cut(s)	303, 335
AspS9I	GGNCC	2 cut(s)	44, 324
BaeGI	GKGCMC	1 cut(s)	9
BamHI	GGATCC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	101, 144
BceAI	ACGGC	2 cut(s)	58, 118
BciT130I	CCWGG	2 cut(s)	48, 309
BclI	TGATCA	1 cut(s)	90
BfmI	CTRYAG	1 cut(s)	115
BisI	GCNGC	2 cut(s)	115, 133
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	2 cut(s)	116, 134
Bme1390I	CCNGG	2 cut(s)	48, 309
BmgT120I	GGNCC	2 cut(s)	44, 324
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	2 cut(s)	48, 309
Bpu10I	CCTNAGC	1 cut(s)	182
Bpu1102I	GCTNAGC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	46, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	48, 309
BseDI	CCNNGG	2 cut(s)	46, 141
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	210
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	2 cut(s)	101, 144
Bsh1236I	CGCG	1 cut(s)	66
BshFI	GGCC	3 cut(s)	45, 105, 325
BslI	CCNNNNNNNGG	1 cut(s)	288
BsnI	GGCC	3 cut(s)	45, 105, 325
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	4 cut(s)	50, 90, 147, 191
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	2 cut(s)	55, 130
BspANI	GGCC	3 cut(s)	45, 105, 325
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	119
BspPI	GGATC	2 cut(s)	45, 58
BsrDI	GCAATG	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	46, 141
BssMI	GATC	4 cut(s)	50, 90, 147, 191
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	48, 309
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	119
BstDEI	CTNAG	3 cut(s)	33, 182, 219
BstFNI	CGCG	1 cut(s)	66
BstKTI	GATC	4 cut(s)	53, 93, 150, 194
BstMBI	GATC	4 cut(s)	50, 90, 147, 191
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 111
BstNI	CCWGG	2 cut(s)	48, 309
BstSCI	CCNGG	2 cut(s)	46, 307
BstSFI	CTRYAG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	9
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	101, 144
BstX2I	RGATCY	1 cut(s)	50
BstYI	RGATCY	1 cut(s)	50
BsuRI	GGCC	3 cut(s)	45, 105, 325
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	119
Cfr13I	GGNCC	2 cut(s)	44, 324
Csp6I	GTAC	2 cut(s)	100, 279
CviAII	CATG	3 cut(s)	83, 109, 316
CviJI	RGCY	8 cut(s)	45, 105, 153, 169, 186, 218, 223, 325
CviKI_1	RGCY	8 cut(s)	45, 105, 153, 169, 186, 218, 223, 325
CviQI	GTAC	2 cut(s)	100, 279
DdeI	CTNAG	3 cut(s)	33, 182, 219
DpnI	GATC	4 cut(s)	52, 92, 149, 193
DpnII	GATC	4 cut(s)	50, 90, 147, 191
Eam1104I	CTCTTC	1 cut(s)	326
EarI	CTCTTC	1 cut(s)	326
Eco130I	CCWWGG	1 cut(s)	141
EcoRII	CCWGG	2 cut(s)	46, 307
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	3 cut(s)	86, 112, 319
FaiI	YATR	6 cut(s)	84, 110, 201, 241, 270, 317
FatI	CATG	3 cut(s)	82, 108, 315
FauI	CCCGC	1 cut(s)	62
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	115, 133
Fsp4HI	GCNGC	2 cut(s)	115, 133
GluI	GCNGC	2 cut(s)	115, 133
HaeIII	GGCC	3 cut(s)	45, 105, 325
Hin1II	CATG	3 cut(s)	86, 112, 319
HinfI	GANTC	2 cut(s)	203, 312
Hpy188I	TCNGA	1 cut(s)	350
Hpy188III	TCNNGA	3 cut(s)	19, 94, 174
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	117, 276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 111
HpyF3I	CTNAG	3 cut(s)	33, 182, 219
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	86, 112, 319
Ksp22I	TGATCA	1 cut(s)	90
Kzo9I	GATC	4 cut(s)	50, 90, 147, 191
LmnI	GCTCC	1 cut(s)	215
LpnPI	CCDG	9 cut(s)	4, 33, 60, 73, 79, 103, 233, 294, 321
Lsp1109I	GCAGC	2 cut(s)	101, 144
MaeII	ACGT	1 cut(s)	15
MalI	GATC	4 cut(s)	52, 92, 149, 193
MboI	GATC	4 cut(s)	50, 90, 147, 191
MboII	GAAGA	1 cut(s)	343
MflI	RGATCY	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	9
MlyI	GAGTC	1 cut(s)	306
MnlI	CCTC	2 cut(s)	90, 116
MseI	TTAA	2 cut(s)	159, 285
MspR9I	CCNGG	2 cut(s)	48, 309
MvaI	CCWGG	2 cut(s)	48, 309
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	2 cut(s)	63, 111
NdeII	GATC	4 cut(s)	50, 90, 147, 191
NlaIII	CATG	3 cut(s)	86, 112, 319
NlaIV	GGNNCC	1 cut(s)	52
PfeI	GAWTC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	2 cut(s)	116, 134
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	46, 307
PspGI	CCWGG	2 cut(s)	46, 307
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	2 cut(s)	44, 324
PstI	CTGCAG	1 cut(s)	119
PsuI	RGATCY	1 cut(s)	50
RsaI	GTAC	2 cut(s)	101, 280
RsaNI	GTAC	2 cut(s)	100, 279
SaqAI	TTAA	2 cut(s)	159, 285
SatI	GCNGC	2 cut(s)	115, 133
Sau3AI	GATC	4 cut(s)	50, 90, 147, 191
Sau96I	GGNCC	2 cut(s)	44, 324
SchI	GAGTC	1 cut(s)	306
ScrFI	CCNGG	2 cut(s)	48, 309
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	6 cut(s)	18, 62, 165, 188, 220, 225
SfcI	CTRYAG	1 cut(s)	115
SsiI	CCGC	2 cut(s)	55, 130
StyD4I	CCNGG	2 cut(s)	46, 307
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	283
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	203
Tru1I	TTAA	2 cut(s)	159, 285
Tru9I	TTAA	2 cut(s)	159, 285
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	2 cut(s)	114, 132
TspDTI	ATGAA	2 cut(s)	145, 243
TspGWI	ACGGA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.