MD05G1000600.v1.1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011986
Physical Location & Seq
Reverse (-)
177915 .. 178151
237 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1000600.v1.1.491

Sequence Viewer

Length: 237 bp
ATGGGACACTCGAATGTATGGAACTCTCACCACAAGAACTTTGGCCCTGGTTCCCGCATTTGCCGAGTGTGTGGAAACCCTCATGGGTGGATCCGAAAGTATGCGCTGATGTGCTGCAGGCAGTGCTTCTGCAGCAATGCCAAGGAGATTGGCTTGATCAAGTGCTCAGAGGACGCCTACGTTTCATATTCTCCTTCAGCGCTCGGAGGAGCAGATGGCCGGCAGCAACAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022626 GO:0022627 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042175 GO:0042788 GO:0042886 GO:0042981 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

79

Amino Acids

8.62

Weight (kDa)

8.98

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 7 - 56 8e-10 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 55
AclWI GGATC 2 cut(s) 85, 98
AcoI YGGCCR 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 174
AfeI AGCGCT 1 cut(s) 201
AjnI CCWGG 1 cut(s) 46
Alw21I GWGCWC 1 cut(s) 167
AlwI GGATC 2 cut(s) 85, 98
Aor51HI AGCGCT 1 cut(s) 201
AoxI GGCC 2 cut(s) 43, 217
ApeKI GCWGC 3 cut(s) 114, 132, 223
AspLEI GCGC 2 cut(s) 106, 202
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 2 cut(s) 101, 144
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 48
BclI TGATCA 1 cut(s) 156
BfmI CTRYAG 2 cut(s) 115, 130
BfoI RGCGCY 1 cut(s) 203
BisI GCNGC 3 cut(s) 115, 133, 224
BlsI GCNGC 3 cut(s) 116, 134, 225
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 52, 92
BmrFI CCNGG 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 46, 141
Bse118I RCCGGY 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 46, 141
BseMI GCAATG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 101, 144
BshFI GGCC 2 cut(s) 45, 219
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 45, 219
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 90, 156
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 45, 219
BspCNI CTCAG 1 cut(s) 179
BspLI GGNNCC 2 cut(s) 52, 92
BspMAI CTGCAG 2 cut(s) 119, 134
BspPI GGATC 2 cut(s) 85, 98
BsrDI GCAATG 1 cut(s) 142
BsrFI RCCGGY 1 cut(s) 219
BssAI RCCGGY 1 cut(s) 219
BssECI CCNNGG 2 cut(s) 46, 141
BssMI GATC 2 cut(s) 90, 156
BssNI GRCGYC 1 cut(s) 174
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 48
BstACI GRCGYC 1 cut(s) 174
BstAPI GCANNNNNTGC 1 cut(s) 123
BstC8I GCNNGC 2 cut(s) 119, 221
BstDEI CTNAG 1 cut(s) 166
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 2 cut(s) 106, 202
BstKTI GATC 2 cut(s) 93, 159
BstMBI GATC 2 cut(s) 90, 156
BstMWI GCNNNNNNNGC 3 cut(s) 123, 132, 229
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 2 cut(s) 115, 130
BstV1I GCAGC 2 cut(s) 101, 144
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 2 cut(s) 45, 219
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 119, 221
CfoI GCGC 2 cut(s) 106, 202
Cfr10I RCCGGY 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 182
CviAII CATG 2 cut(s) 83, 234
CviJI RGCY 4 cut(s) 45, 153, 219, 232
CviKI_1 RGCY 4 cut(s) 45, 153, 219, 232
DdeI CTNAG 1 cut(s) 166
DpnI GATC 2 cut(s) 92, 158
DpnII GATC 2 cut(s) 90, 156
EaeI YGGCCR 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 141
Eco47III AGCGCT 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 86, 237
FaiI YATR 5 cut(s) 19, 84, 102, 187, 235
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 82, 233
FauI CCCGC 1 cut(s) 62
FbaI TGATCA 1 cut(s) 156
Fnu4HI GCNGC 3 cut(s) 115, 133, 224
Fsp4HI GCNGC 3 cut(s) 115, 133, 224
GlaI GCGC 2 cut(s) 105, 201
GluI GCNGC 3 cut(s) 115, 133, 224
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 2 cut(s) 45, 219
HapII CCGG 1 cut(s) 220
HgaI GACGC 1 cut(s) 182
HhaI GCGC 2 cut(s) 106, 202
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 86, 237
Hin6I GCGC 2 cut(s) 104, 200
HinP1I GCGC 2 cut(s) 104, 200
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 3 cut(s) 95, 169, 206
HpyAV CCTTC 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 180
HpyCH4V TGCA 2 cut(s) 117, 132
HpyF10VI GCNNNNNNNGC 3 cut(s) 123, 132, 229
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 86, 237
HspAI GCGC 2 cut(s) 104, 200
KroI GCCGGC 1 cut(s) 219
KroNI GCCGGC 1 cut(s) 221
Ksp22I TGATCA 1 cut(s) 156
Kzo9I GATC 2 cut(s) 90, 156
LmnI GCTCC 1 cut(s) 209
LpnPI CCDG 4 cut(s) 33, 60, 103, 233
Lsp1109I GCAGC 2 cut(s) 101, 144
MaeII ACGT 1 cut(s) 180
MalI GATC 2 cut(s) 92, 158
MboI GATC 2 cut(s) 90, 156
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 167
MnlI CCTC 3 cut(s) 90, 163, 200
MroNI GCCGGC 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 12
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 123, 132, 229
NaeI GCCGGC 1 cut(s) 221
NdeII GATC 2 cut(s) 90, 156
NgoMIV GCCGGC 1 cut(s) 219
NlaIII CATG 2 cut(s) 86, 237
NlaIV GGNNCC 2 cut(s) 52, 92
NmeAIII GCCGAG 1 cut(s) 89
PdiI GCCGGC 1 cut(s) 221
PkrI GCNGC 3 cut(s) 116, 134, 225
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 52, 92
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 2 cut(s) 119, 134
PsuI RGATCY 1 cut(s) 90
RseI CAYNNNNRTG 1 cut(s) 12
SatI GCNGC 3 cut(s) 115, 133, 224
Sau3AI GATC 2 cut(s) 90, 156
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 167
SetI ASST 1 cut(s) 183
SfcI CTRYAG 2 cut(s) 115, 130
SmiMI CAYNNNNRTG 1 cut(s) 12
SsiI CCGC 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 141
TaiI ACGT 1 cut(s) 183
TaqI TCGA 1 cut(s) 11
TscAI CASTG 1 cut(s) 128
TseI GCWGC 3 cut(s) 114, 132, 223
TspDTI ATGAA 1 cut(s) 174
TspRI CASTG 1 cut(s) 128
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.