MD15G1072100.v1.1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011986
Physical Location & Seq
Reverse (-)
4933682 .. 4936163
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1072100.v1.1.491

Sequence Viewer

Length: 198 bp
ATGGGACACTCGAACGTATGGAACTCTCACCCCAAGAACTACGGCCCCGGTTCCCGCACTTGCCGAGTGTGTGGAAACCCTCATGGGTTGATCCGGAAGTATGCGCTGATGTGCTGCAGGCAGTGCTTCCGCAGCAATGCCAAGGAGATTGGCTTCATCAAGCAAATCATAAGCTACATTTACGTATCTTATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022626 GO:0022627 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042175 GO:0042788 GO:0042886 GO:0042981 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

66

Amino Acids

7.52

Weight (kDa)

9.62

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 7 - 54 2.6e-14 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 2 cut(s) 55, 130
AclWI GGATC 1 cut(s) 85
AluBI AGCT 1 cut(s) 174
AluI AGCT 1 cut(s) 174
AlwI GGATC 1 cut(s) 85
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 2 cut(s) 114, 132
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 48
AsuHPI GGTGA 1 cut(s) 20
BbvI GCAGC 2 cut(s) 101, 144
BceAI ACGGC 1 cut(s) 58
BcnI CCSGG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 2 cut(s) 115, 133
BlsI GCNGC 2 cut(s) 116, 134
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 46, 52
BmrFI CCNGG 1 cut(s) 48
BpuMI CCSGG 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 46, 141
BsaWI WCCGGW 1 cut(s) 93
Bse3DI GCAATG 1 cut(s) 142
BseAI TCCGGA 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 46, 141
BseMI GCAATG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 101, 144
BshFI GGCC 1 cut(s) 45
BsiSI CCGG 2 cut(s) 48, 94
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 45
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 2 cut(s) 55, 130
BspANI GGCC 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 93
BspLI GGNNCC 2 cut(s) 46, 52
BspMAI CTGCAG 1 cut(s) 119
BspPI GGATC 1 cut(s) 85
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 46, 141
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 141
BstAPI GCANNNNNTGC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 1 cut(s) 119
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 123, 132
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 115
BstSNI TACGTA 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 101, 144
BsuRI GGCC 1 cut(s) 45
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 119
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 44
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 45, 153, 174
CviKI_1 RGCY 3 cut(s) 45, 153, 174
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco105I TACGTA 1 cut(s) 184
Eco130I CCWWGG 1 cut(s) 141
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 86
FaiI YATR 4 cut(s) 19, 84, 102, 170
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 82
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 2 cut(s) 115, 133
Fsp4HI GCNGC 2 cut(s) 115, 133
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 115, 133
HaeIII GGCC 1 cut(s) 45
HapII CCGG 2 cut(s) 48, 94
HhaI GCGC 1 cut(s) 106
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HpaII CCGG 2 cut(s) 48, 94
HphI GGTGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 94
HpyCH4IV ACGT 2 cut(s) 15, 183
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 132
HpySE526I ACGT 2 cut(s) 15, 183
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 1 cut(s) 104
Kpn2I TCCGGA 1 cut(s) 93
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 3 cut(s) 61, 103, 107
Lsp1109I GCAGC 2 cut(s) 101, 144
MaeII ACGT 2 cut(s) 15, 183
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MnlI CCTC 1 cut(s) 90
MroI TCCGGA 1 cut(s) 93
MspI CCGG 2 cut(s) 48, 94
MspR9I CCNGG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 123, 132
NciI CCSGG 1 cut(s) 48
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 2 cut(s) 46, 52
NmeAIII GCCGAG 1 cut(s) 89
PkrI GCNGC 2 cut(s) 116, 134
Ppu21I YACGTR 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 46, 52
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 119
SatI GCNGC 2 cut(s) 115, 133
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 48
SetI ASST 3 cut(s) 18, 176, 186
SfcI CTRYAG 1 cut(s) 115
SnaBI TACGTA 1 cut(s) 184
SsiI CCGC 2 cut(s) 55, 130
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 141
TaiI ACGT 2 cut(s) 18, 186
TaqI TCGA 1 cut(s) 11
TscAI CASTG 1 cut(s) 128
TseI GCWGC 2 cut(s) 114, 132
TspDTI ATGAA 1 cut(s) 145
TspRI CASTG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.