RchiOBHm_Chr6g0309341

40S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0011986
Physical Location & Seq
Forward (+)
67082908 .. 67084679
1772 bp
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UTR
Exon/CDS
Intron
PRQ27817

Sequence Viewer

Length: 171 bp
ATGGGACACTCGAACGTCTGGAACTCGCATCCCAAGTCTTACGGCCCTGGTTCTCGCACTTGCCGAGTGTGTGGGAACCCTCATGGGTTGATCAGGAAGTACGGACTGATGTGCTGCAGGCAGTGCTTCCGTAGCAATGCAAAGGAAATTGGCTTCATCAAGTACCGTTAA

Protein Analysis

56

Amino Acids

6.4

Weight (kDa)

9.98

Isoelectric Point (pI)

16.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 7 - 55 4.5e-15 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 101, 164
AjnI CCWGG 1 cut(s) 46
AoxI GGCC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 114
AspS9I GGNCC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 48
BclI TGATCA 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 48
BmsI GCATC 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 1 cut(s) 28
BseMI GCAATG 1 cut(s) 142
BseXI GCAGC 1 cut(s) 101
BshFI GGCC 1 cut(s) 45
BslFI GGGAC 1 cut(s) 18
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 90
BspANI GGCC 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 77
BspMAI CTGCAG 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 123, 132
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 45
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 100, 163
CviAII CATG 1 cut(s) 83
CviJI RGCY 2 cut(s) 45, 153
CviKI_1 RGCY 2 cut(s) 45, 153
CviQI GTAC 2 cut(s) 100, 163
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
EcoRII CCWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 86
FaiI YATR 1 cut(s) 84
FaqI GGGAC 1 cut(s) 18
FatI CATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 45
Hin1II CATG 1 cut(s) 86
Hpy188III TCNNGA 2 cut(s) 19, 94
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 117, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 132
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 86
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 5 cut(s) 4, 33, 60, 79, 103
Lsp1109I GCAGC 1 cut(s) 101
LweI GCATC 1 cut(s) 37
MaeII ACGT 1 cut(s) 15
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MluCI AATT 1 cut(s) 147
MnlI CCTC 1 cut(s) 90
MseI TTAA 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 123, 132
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 77
NmeAIII GCCGAG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PkrI GCNGC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 119
RsaI GTAC 2 cut(s) 101, 164
RsaNI GTAC 2 cut(s) 100, 163
SaqAI TTAA 1 cut(s) 169
SatI GCNGC 1 cut(s) 115
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 48
SetI ASST 1 cut(s) 18
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 46
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 11
TasI AATT 1 cut(s) 147
Tru1I TTAA 1 cut(s) 169
Tru9I TTAA 1 cut(s) 169
TscAI CASTG 1 cut(s) 128
TseI GCWGC 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 145
TspGWI ACGGA 2 cut(s) 117, 119
TspRI CASTG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.