Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008375.1

Orthogroup ID

OG0011986

Physical Location & Seq

Genomic Coordinates Reverse (-)

1439 .. 3320

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008375.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 181 bp

agattcaaagatgggacactcgaacgtctggaactcgcatcccaagtcttacggccctggttctcgcacttgccgagtgtgtgggaaccctcatgggttgatcaggaagtacggactgatgtgctgcaggcagtgcttccgcagcaatgcaaaggaaattggcttcatcaagtaccgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0008270 GO:0015935 GO:0022626 GO:0022627 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S14

Protein Analysis

59

Amino Acids

6.73

Weight (kDa)

9.9

Isoelectric Point (pI)

25.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43980 AT3G44010 AT3G44010 AT4G33865
malus_domestica	MD05G1000600.v1.1 MD05G1097200.v1.1 MD08G1087300.v1.1 MD10G1103200.v1.1 MD15G1072100.v1.1
prunus_persica	Prupe.1G424800_v2.0.a1 Prupe.8G141900_v2.0.a1
pyrus_communis	pycom05g09580
rosa_chinensis	RchiOBHm_Chr6g0253421 RchiOBHm_Chr6g0309341
rosa_multiflora	Rmu_sc0008375.1_g000002
rosa_rugosa	Rorug05G0111300 Rorug06G0371400
rosa_wichuraiana	Rw6G005310 Rw6G042190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	111, 174
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	56
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	2 cut(s)	124, 142
AspS9I	GGNCC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	111, 154
BccI	CCATC	1 cut(s)	5
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	1 cut(s)	58
BclI	TGATCA	1 cut(s)	100
BfmI	CTRYAG	1 cut(s)	125
BisI	GCNGC	2 cut(s)	125, 143
BlsI	GCNGC	2 cut(s)	126, 144
Bme1390I	CCNGG	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	56
BseGI	GGATG	1 cut(s)	38
BseMI	GCAATG	1 cut(s)	152
BseXI	GCAGC	2 cut(s)	111, 154
BshFI	GGCC	1 cut(s)	55
BslFI	GGGAC	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	55
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	87
BspMAI	CTGCAG	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	56
BssMI	GATC	1 cut(s)	100
Bst2UI	CCWGG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	177
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstC8I	GCNNGC	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	103
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	2 cut(s)	133, 142
BstNI	CCWGG	1 cut(s)	58
BstSCI	CCNGG	1 cut(s)	56
BstSFI	CTRYAG	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	111, 154
BsuRI	GGCC	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	38
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	1 cut(s)	138
Cac8I	GCNNGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	2 cut(s)	110, 173
CviAII	CATG	1 cut(s)	93
CviJI	RGCY	2 cut(s)	55, 163
CviKI_1	RGCY	2 cut(s)	55, 163
CviQI	GTAC	2 cut(s)	110, 173
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EcoRII	CCWGG	1 cut(s)	56
FaeI	CATG	1 cut(s)	96
FaiI	YATR	1 cut(s)	94
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	92
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	125, 143
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	2 cut(s)	125, 143
GluI	GCNGC	2 cut(s)	125, 143
HaeIII	GGCC	1 cut(s)	55
Hin1II	CATG	1 cut(s)	96
HinfI	GANTC	1 cut(s)	3
Hpy188III	TCNNGA	2 cut(s)	29, 104
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	127, 150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	133, 142
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	5 cut(s)	14, 43, 70, 89, 113
Lsp1109I	GCAGC	2 cut(s)	111, 154
LweI	GCATC	1 cut(s)	47
MaeII	ACGT	1 cut(s)	25
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MluCI	AATT	1 cut(s)	157
MnlI	CCTC	1 cut(s)	100
MseI	TTAA	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	58
MvaI	CCWGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	133, 142
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	1 cut(s)	96
NlaIV	GGNNCC	1 cut(s)	87
NmeAIII	GCCGAG	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	3
PkrI	GCNGC	2 cut(s)	126, 144
Psp6I	CCWGG	1 cut(s)	56
PspGI	CCWGG	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	129
RsaI	GTAC	2 cut(s)	111, 174
RsaNI	GTAC	2 cut(s)	110, 173
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	125, 143
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	58
SetI	ASST	1 cut(s)	28
SfaNI	GCATC	1 cut(s)	47
SfcI	CTRYAG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	21
TasI	AATT	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	138
TseI	GCWGC	2 cut(s)	124, 142
TspDTI	ATGAA	1 cut(s)	155
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.