AT4G33865

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011986
Physical Location & Seq
Reverse (-)
16233045 .. 16234273
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33865.1

Sequence Viewer

Length: 171 bp
ATGGGTCACTCCAACGTCTGGAATTCTCATCCTAAGAAATACGGTCCTGGTTCTCGCTTATGCCGTGTGTGTGGAAACTCCCATGGGCTAATCAGGAAGTATGGTCTCAACTGCTGCAGACAGTGTTTCCGTAGCAACGCCAAGGAAATCGGATTCATTAAGTACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022626 GO:0022627 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042175 GO:0042788 GO:0042886 GO:0042981 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

56

Amino Acids

6.43

Weight (kDa)

10.07

Isoelectric Point (pI)

16.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 7 - 55 5.1e-14 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 1 cut(s) 164
AfiI CCNNNNNNNGG 1 cut(s) 18
AjnI CCWGG 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 114
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 44
AvaII GGWCC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 1 cut(s) 48
BcoDI GTCTC 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 1 cut(s) 115
BlsI GCNGC 1 cut(s) 116
Bme1390I CCNGG 1 cut(s) 48
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 48
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 2 cut(s) 82, 141
Bsc4I CCNNNNNNNGG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 82, 141
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 18
BseXI GCAGC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 110
Bso31I GGTCTC 1 cut(s) 110
Bsp19I CCATGG 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 119
BspTNI GGTCTC 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 82, 141
BssT1I CCWWGG 2 cut(s) 82, 141
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 3 cut(s) 44, 123, 167
BstDEI CTNAG 1 cut(s) 33
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 101
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 163
CviAII CATG 1 cut(s) 83
CviJI RGCY 1 cut(s) 88
CviKI_1 RGCY 1 cut(s) 88
CviQI GTAC 1 cut(s) 163
DdeI CTNAG 1 cut(s) 33
Eco130I CCWWGG 2 cut(s) 82, 141
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 2 cut(s) 82, 141
ErhI CCWWGG 2 cut(s) 82, 141
FaeI CATG 1 cut(s) 86
FaiI YATR 3 cut(s) 61, 84, 102
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 1 cut(s) 115
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 1 cut(s) 115
GluI GCNGC 1 cut(s) 115
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 152
Hpy188III TCNNGA 2 cut(s) 19, 94
HpyCH4III ACNGT 3 cut(s) 44, 123, 167
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 117
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 86
LpnPI CCDG 4 cut(s) 4, 33, 60, 79
Lsp1109I GCAGC 1 cut(s) 101
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 5
MluCI AATT 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 36
MseI TTAA 1 cut(s) 159
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
NcoI CCATGG 1 cut(s) 82
NlaIII CATG 1 cut(s) 86
NmuCI GTSAC 1 cut(s) 5
PcsI WCGNNNNNNNCGW 1 cut(s) 61
PfeI GAWTC 1 cut(s) 153
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 119
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 115
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 48
SetI ASST 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 115
SgeI CNNG 8 cut(s) 31, 59, 60, 66, 77, 95, 106, 154
SinI GGWCC 1 cut(s) 44
Sse9I AATT 1 cut(s) 22
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 2 cut(s) 82, 141
TaaI ACNGT 3 cut(s) 44, 123, 167
TaiI ACGT 1 cut(s) 18
TasI AATT 1 cut(s) 22
TfiI GAWTC 1 cut(s) 153
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 128
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 145
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 18
VpaK11BI GGWCC 1 cut(s) 44
XapI RAATTY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.