Prupe.1G424800_v2.0.a1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011986
Physical Location & Seq
Reverse (-)
36599103 .. 36600684
1582 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G424800.1

Sequence Viewer

Length: 171 bp
ATGGGCCATTCCAACGTTTGGAATTCTCATCCGAAGAACTACGGGCCTGGTTCCCGTACGTGTCGGGTATGTGGAAACCCTCATGGGTTGATCCGGAAGTACGCCTTGATGTGCTGCAGGCAGTGCTTCCGCAGCAACGCCAAGGAAATCGGCTTCATCAAGTACCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022626 GO:0022627 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042175 GO:0042788 GO:0042886 GO:0042981 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

57

Amino Acids

6.44

Weight (kDa)

9.98

Isoelectric Point (pI)

22.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 2 cut(s) 130, 166
AclI AACGTT 1 cut(s) 15
AclWI GGATC 1 cut(s) 85
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 3 cut(s) 58, 101, 164
AfiI CCNNNNNNNGG 1 cut(s) 18
AflIII ACRYGT 1 cut(s) 59
AjnI CCWGG 1 cut(s) 46
AlwI GGATC 1 cut(s) 85
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 2 cut(s) 4, 44
ApeKI GCWGC 2 cut(s) 114, 132
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 4, 44
BbvI GCAGC 2 cut(s) 101, 144
BciT130I CCWGG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 2 cut(s) 115, 133
BlsI GCNGC 2 cut(s) 116, 134
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 2 cut(s) 4, 44
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 48
BsaAI YACGTR 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 18
BseAI TCCGGA 1 cut(s) 93
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 101, 144
BshFI GGCC 2 cut(s) 6, 46
BsiSI CCGG 1 cut(s) 94
BsiWI CGTACG 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 18
BsnI GGCC 2 cut(s) 6, 46
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 1 cut(s) 90
BspACI CCGC 2 cut(s) 130, 166
BspANI GGCC 2 cut(s) 6, 46
BspEI TCCGGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 119
BspPI GGATC 1 cut(s) 85
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 48
BstAPI GCANNNNNTGC 1 cut(s) 123
BstBAI YACGTR 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 1 cut(s) 93
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 123, 132
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 101, 144
BsuRI GGCC 2 cut(s) 6, 46
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 2 cut(s) 4, 44
Csp6I GTAC 3 cut(s) 57, 100, 163
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 6, 46, 153
CviKI_1 RGCY 3 cut(s) 6, 46, 153
CviQI GTAC 3 cut(s) 57, 100, 163
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 1 cut(s) 86
FaiI YATR 2 cut(s) 70, 84
FalI AAGNNNNNCTT 2 cut(s) 89, 121
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 2 cut(s) 115, 133
FokI GGATG 1 cut(s) 15
Fsp4HI GCNGC 2 cut(s) 115, 133
GluI GCNGC 2 cut(s) 115, 133
HaeIII GGCC 2 cut(s) 6, 46
HapII CCGG 1 cut(s) 94
Hin1II CATG 1 cut(s) 86
HpaII CCGG 1 cut(s) 94
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 94
HpyCH4IV ACGT 2 cut(s) 15, 59
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 132
HpySE526I ACGT 2 cut(s) 15, 59
Hsp92II CATG 1 cut(s) 86
Kpn2I TCCGGA 1 cut(s) 93
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 4 cut(s) 33, 60, 103, 107
Lsp1109I GCAGC 2 cut(s) 101, 144
MaeII ACGT 2 cut(s) 15, 59
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 1 cut(s) 46
MluCI AATT 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 1 cut(s) 90
MroI TCCGGA 1 cut(s) 93
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 123, 132
NdeII GATC 1 cut(s) 90
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 52
Pfl23II CGTACG 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 18
PkrI GCNGC 2 cut(s) 116, 134
Ppu21I YACGTR 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspLI CGTACG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 2 cut(s) 4, 44
PstI CTGCAG 1 cut(s) 119
RsaI GTAC 3 cut(s) 58, 101, 164
RsaNI GTAC 3 cut(s) 57, 100, 163
SatI GCNGC 2 cut(s) 115, 133
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 4, 44
ScrFI CCNGG 1 cut(s) 48
SetI ASST 2 cut(s) 18, 62
SfcI CTRYAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 22
SsiI CCGC 2 cut(s) 130, 166
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 141
TaiI ACGT 2 cut(s) 18, 62
TasI AATT 1 cut(s) 22
TscAI CASTG 1 cut(s) 128
TseI GCWGC 2 cut(s) 114, 132
TspDTI ATGAA 1 cut(s) 145
TspRI CASTG 1 cut(s) 128
Van91I CCANNNNNTGG 1 cut(s) 18
XapI RAATTY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.