MD05G1097200.v1.1

ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011986
Physical Location & Seq
Forward (+)
20318765 .. 20319957
1193 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1097200.v1.1.491

Sequence Viewer

Length: 171 bp
ATGGGGCACTCAAACGTCTGGAATTCTCACCCTAAGAACTACGGCCCTGGATCCCGCACCTGTCGCGTGTGTGGAAACCCTCATGGGTTGATCAGGAAGTACGGCCTCATGTGCTGCAGGCAGTGCTTCCGCAGCAATGCCAAGGAGATCGGCTTCATTAAGTACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005789 GO:0005791 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0010941 GO:0010942 GO:0012505 GO:0015031 GO:0015833 GO:0015935 GO:0016020 GO:0016070 GO:0016071 GO:0019222 GO:0019439 GO:0019538 GO:0022626 GO:0022627 GO:0030867 GO:0031090 GO:0031974 GO:0031981 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0042175 GO:0042788 GO:0042886 GO:0042981 GO:0043043 GO:0043065 GO:0043067 GO:0043068 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044432 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070013 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0098552 GO:0098554 GO:0098556 GO:0098562 GO:0098588 GO:0098827 GO:1901360 GO:1901361 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S14

Protein Analysis

57

Amino Acids

6.43

Weight (kDa)

9.98

Isoelectric Point (pI)

16.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S14 PF00253 7 - 55 7.8e-16 Ribosomal protein S14p/S29e
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 55, 130
AclWI GGATC 2 cut(s) 45, 58
AcsI RAATTY 1 cut(s) 22
AfaI GTAC 2 cut(s) 101, 164
AjnI CCWGG 1 cut(s) 46
AlwI GGATC 2 cut(s) 45, 58
AoxI GGCC 2 cut(s) 43, 103
ApeKI GCWGC 2 cut(s) 114, 132
ApoI RAATTY 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 20
BaeGI GKGCMC 1 cut(s) 9
BamHI GGATCC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 101, 144
BceAI ACGGC 2 cut(s) 58, 118
BciT130I CCWGG 1 cut(s) 48
BclI TGATCA 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 2 cut(s) 115, 133
BlsI GCNGC 2 cut(s) 116, 134
Bme1390I CCNGG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 1 cut(s) 52
BmrFI CCNGG 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 46, 141
Bse3DI GCAATG 1 cut(s) 142
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 46, 141
BseMI GCAATG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 2 cut(s) 101, 144
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 45, 105
BsnI GGCC 2 cut(s) 45, 105
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 50, 90, 147
BspACI CCGC 2 cut(s) 55, 130
BspANI GGCC 2 cut(s) 45, 105
BspFNI CGCG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 119
BspPI GGATC 2 cut(s) 45, 58
BsrDI GCAATG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 46, 141
BssMI GATC 3 cut(s) 50, 90, 147
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 33
BstFNI CGCG 1 cut(s) 66
BstKTI GATC 3 cut(s) 53, 93, 150
BstMBI GATC 3 cut(s) 50, 90, 147
BstMWI GCNNNNNNNGC 4 cut(s) 63, 111, 123, 132
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 9
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 101, 144
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 2 cut(s) 45, 105
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 1 cut(s) 128
Cac8I GCNNGC 1 cut(s) 119
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 2 cut(s) 100, 163
CviAII CATG 2 cut(s) 83, 109
CviJI RGCY 3 cut(s) 45, 105, 153
CviKI_1 RGCY 3 cut(s) 45, 105, 153
CviQI GTAC 2 cut(s) 100, 163
DdeI CTNAG 1 cut(s) 33
DpnI GATC 3 cut(s) 52, 92, 149
DpnII GATC 3 cut(s) 50, 90, 147
Eco130I CCWWGG 1 cut(s) 141
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 2 cut(s) 86, 112
FaiI YATR 2 cut(s) 84, 110
FatI CATG 2 cut(s) 82, 108
FauI CCCGC 1 cut(s) 62
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 115, 133
Fsp4HI GCNGC 2 cut(s) 115, 133
GluI GCNGC 2 cut(s) 115, 133
HaeIII GGCC 2 cut(s) 45, 105
Hin1II CATG 2 cut(s) 86, 112
HphI GGTGA 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 19, 94
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 111, 123, 132
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 86, 112
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 3 cut(s) 50, 90, 147
LpnPI CCDG 6 cut(s) 4, 33, 60, 73, 79, 103
Lsp1109I GCAGC 2 cut(s) 101, 144
MaeII ACGT 1 cut(s) 15
MalI GATC 3 cut(s) 52, 92, 149
MboI GATC 3 cut(s) 50, 90, 147
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 22
MnlI CCTC 2 cut(s) 90, 116
MseI TTAA 2 cut(s) 159, 169
MspR9I CCNGG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 63, 111, 123, 132
NdeII GATC 3 cut(s) 50, 90, 147
NlaIII CATG 2 cut(s) 86, 112
NlaIV GGNNCC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 116, 134
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 2 cut(s) 101, 164
RsaNI GTAC 2 cut(s) 100, 163
SaqAI TTAA 2 cut(s) 159, 169
SatI GCNGC 2 cut(s) 115, 133
Sau3AI GATC 3 cut(s) 50, 90, 147
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 48
SduI GDGCHC 1 cut(s) 9
SetI ASST 2 cut(s) 18, 62
SfcI CTRYAG 1 cut(s) 115
Sse9I AATT 1 cut(s) 22
SsiI CCGC 2 cut(s) 55, 130
StyD4I CCNGG 1 cut(s) 46
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 1 cut(s) 18
TasI AATT 1 cut(s) 22
Tru1I TTAA 2 cut(s) 159, 169
Tru9I TTAA 2 cut(s) 159, 169
TscAI CASTG 1 cut(s) 128
TseI GCWGC 2 cut(s) 114, 132
TspDTI ATGAA 1 cut(s) 145
TspRI CASTG 1 cut(s) 128
XapI RAATTY 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.