AT3G44100
ERF Family

Domain involved in innate immunity and lipid metabolism.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015418
Physical Location & Seq
Reverse (-)
15865933 .. 15867534
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44100.1

Sequence Viewer

Length: 459 bp
ATGGCGATTTCTCAAGCTCAGCCTCTGCTTCTTCTCCTCTTATCAGTCTTCTTCTTACCTGCTTTGCACGCCACTTCTTTCACCTACTGCGATAAGAGGCTCGATCCCGTTAAGGTCACGGGTGTGAAGATCTCCCCTGACCCTGTTGTGAGTGGTGCAGCCGCAACATTTAAGATTTTTGGTTCTACTGGCGAAGACATCTCTGGAGGAAAAGTAGTGATCAGGGTTTTATACGTTGGGATTCCTGTCCATACCGAAACTCATGACCTCTGCGATGAGACGGCATGTCCGGTTGCACCTGGCAGCTTTGTGCTTTCTCATTCTCAAACACTCCCTTCAATTACACCACCTGGTACTTACACGCTAAAGATGACAATCAACGACAAGAATGGCGGAAGACTAACGTGTATCAGCTTCAAATTCAAGATCACAGTAGGTTCTGCGGTCTTTGCTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

152

Amino Acids

16.07

Weight (kDa)

8.38

Isoelectric Point (pI)

29.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 25 - 143 8.8e-26 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AciI CCGC 3 cut(s) 162, 393, 443
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 1 cut(s) 419
AfaI GTAC 1 cut(s) 355
AflIII ACRYGT 1 cut(s) 404
AgsI TTSAA 3 cut(s) 339, 418, 424
AhdI GACNNNNNGTC 1 cut(s) 285
AjnI CCWGG 2 cut(s) 298, 349
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 3 cut(s) 17, 306, 414
AluI AGCT 3 cut(s) 17, 306, 414
Alw26I GTCTC 1 cut(s) 272
AlwI GGATC 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 25
ApeKI GCWGC 2 cut(s) 158, 303
ApoI RAATTY 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 73
BbsI GAAGAC 3 cut(s) 40, 201, 403
BbvI GCAGC 2 cut(s) 170, 315
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 2 cut(s) 300, 351
BclI TGATCA 1 cut(s) 219
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 67
BglII AGATCT 1 cut(s) 129
BisI GCNGC 3 cut(s) 159, 162, 304
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 3 cut(s) 160, 163, 305
Bme1390I CCNGG 2 cut(s) 300, 351
BmeRI GACNNNNNGTC 1 cut(s) 285
BmrFI CCNGG 2 cut(s) 300, 351
BpiI GAAGAC 3 cut(s) 40, 201, 403
BpmI CTGGAG 1 cut(s) 225
Bpu1102I GCTNAGC 1 cut(s) 18
BsaBI GATNNNNATC 1 cut(s) 374
BsaWI WCCGGW 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bse1I ACTGG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 2 cut(s) 300, 351
BseJI GATNNNNATC 1 cut(s) 374
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 2 cut(s) 170, 315
BsgI GTGCAG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 290
BsmAI GTCTC 1 cut(s) 272
BsmBI CGTCTC 1 cut(s) 272
Bsp143I GATC 4 cut(s) 103, 129, 219, 426
Bsp1720I GCTNAGC 1 cut(s) 18
BspACI CCGC 3 cut(s) 162, 393, 443
BspCNI CTCAG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 262
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 98
BsrI ACTGG 1 cut(s) 193
BssMI GATC 4 cut(s) 103, 129, 219, 426
Bst2UI CCWGG 2 cut(s) 300, 351
Bst4CI ACNGT 1 cut(s) 433
BstC8I GCNNGC 1 cut(s) 69
BstDEI CTNAG 1 cut(s) 18
BstKTI GATC 4 cut(s) 106, 132, 222, 429
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 4 cut(s) 103, 129, 219, 426
BstMWI GCNNNNNNNGC 2 cut(s) 68, 449
BstNI CCWGG 2 cut(s) 300, 351
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 298, 349
BstV1I GCAGC 2 cut(s) 170, 315
BstV2I GAAGAC 3 cut(s) 40, 201, 403
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BtgZI GCGATG 1 cut(s) 288
BveI ACCTGC 1 cut(s) 67
Cac8I GCNNGC 1 cut(s) 69
CaiI CAGNNNCTG 1 cut(s) 25
CciI TCATGA 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 349
Csp6I GTAC 1 cut(s) 354
CviAII CATG 2 cut(s) 263, 285
CviJI RGCY 6 cut(s) 17, 22, 100, 161, 306, 414
CviKI_1 RGCY 6 cut(s) 17, 22, 100, 161, 306, 414
CviQI GTAC 1 cut(s) 354
DdeI CTNAG 1 cut(s) 18
DpnI GATC 4 cut(s) 105, 131, 221, 428
DpnII GATC 4 cut(s) 103, 129, 219, 426
DriI GACNNNNNGTC 1 cut(s) 285
Eam1105I GACNNNNNGTC 1 cut(s) 285
EciI GGCGGA 1 cut(s) 408
EcoRII CCWGG 2 cut(s) 298, 349
Esp3I CGTCTC 1 cut(s) 272
FaeI CATG 2 cut(s) 266, 288
FaiI YATR 4 cut(s) 232, 252, 264, 286
FatI CATG 2 cut(s) 262, 284
FbaI TGATCA 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 159, 162, 304
Fsp4HI GCNGC 3 cut(s) 159, 162, 304
FspBI CTAG 1 cut(s) 453
GluI GCNGC 3 cut(s) 159, 162, 304
GsuI CTGGAG 1 cut(s) 225
HapII CCGG 1 cut(s) 290
Hin1II CATG 2 cut(s) 266, 288
HinfI GANTC 1 cut(s) 241
HpaII CCGG 1 cut(s) 290
HphI GGTGA 1 cut(s) 73
Hpy188III TCNNGA 3 cut(s) 204, 263, 424
HpyAV CCTTC 1 cut(s) 345
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 2 cut(s) 234, 404
HpyCH4V TGCA 3 cut(s) 67, 158, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 449
HpyF3I CTNAG 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 234, 404
Hsp92II CATG 2 cut(s) 266, 288
Ksp22I TGATCA 1 cut(s) 219
Kzo9I GATC 4 cut(s) 103, 129, 219, 426
Lsp1109I GCAGC 2 cut(s) 170, 315
MabI ACCWGGT 1 cut(s) 349
MaeI CTAG 1 cut(s) 453
MaeII ACGT 2 cut(s) 234, 404
MaeIII GTNAC 1 cut(s) 115
MalI GATC 4 cut(s) 105, 131, 221, 428
MboI GATC 4 cut(s) 103, 129, 219, 426
MboII GAAGA 6 cut(s) 23, 40, 43, 139, 206, 408
MflI RGATCY 1 cut(s) 129
MluCI AATT 2 cut(s) 339, 419
MnlI CCTC 5 cut(s) 33, 47, 90, 200, 278
MseI TTAA 3 cut(s) 111, 171, 457
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 2 cut(s) 300, 351
MvaI CCWGG 2 cut(s) 300, 351
MwoI GCNNNNNNNGC 2 cut(s) 68, 449
NdeII GATC 4 cut(s) 103, 129, 219, 426
NlaIII CATG 2 cut(s) 266, 288
NmuCI GTSAC 1 cut(s) 115
NspI RCATGY 1 cut(s) 288
OliI CACNNNNGTG 1 cut(s) 122
PagI TCATGA 1 cut(s) 262
PfeI GAWTC 1 cut(s) 241
PkrI GCNGC 3 cut(s) 160, 163, 305
Psp6I CCWGG 2 cut(s) 298, 349
PspGI CCWGG 2 cut(s) 298, 349
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 129
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 3 cut(s) 111, 171, 457
SatI GCNGC 3 cut(s) 159, 162, 304
Sau3AI GATC 4 cut(s) 103, 129, 219, 426
ScrFI CCNGG 2 cut(s) 300, 351
SexAI ACCWGGT 1 cut(s) 349
SmiMI CAYNNNNRTG 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 2 cut(s) 339, 419
SsiI CCGC 3 cut(s) 162, 393, 443
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 2 cut(s) 298, 349
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 2 cut(s) 237, 407
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 339, 419
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 241
Tru1I TTAA 3 cut(s) 111, 171, 457
Tru9I TTAA 3 cut(s) 111, 171, 457
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 2 cut(s) 158, 303
Tsp45I GTSAC 1 cut(s) 115
XapI RAATTY 1 cut(s) 419
XceI RCATGY 1 cut(s) 288
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.