Rh5CG357800
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015418
Physical Location & Seq
Forward (+)
42204680 .. 42208548
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG357800.1

Sequence Viewer

Length: 462 bp
ATGACTAGTGTGCTGGTTCACTTGGTTGTGCTGAGCTTCACCTCGTTCCTGCTCCTACCGTTTTCGTACTCTGCTGATGTCAAGTACTGCGGTGCCAAAGATGACTACGCCGTGAAGGTCCAGGGAGTCAAGATATCGCCTGACCCAGTGGTCAGAGGCAAGGCAGCTACCTTCAACATCTCAGCCACAACAGGTCAAGCCATCTCAGGTGGGAAAGTGGTGATTGAAGTTTACTATTTTGGGCTGCGTGTACATACGGAAACTCATGACCTTTGTGAGGAGCTTTCCTGTCCTGTCTCAGCAGGCAACTTCGTACTCTCTCATACTCAAACTTTACCTGGGATCACTCCGCCGGGCTCATACAATCTTAGGATGACAATTGAGGATAATCATAACCACAAGTTGTCTTGCATCAGTTTCAACTTCAAAATTATCTTCGGATCTCTGGTCTCTGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

153

Amino Acids

16.55

Weight (kDa)

6.99

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 26 - 144 1.3e-27 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 92
AciI CCGC 2 cut(s) 90, 350
AclWI GGATC 2 cut(s) 350, 448
AfaI GTAC 4 cut(s) 68, 86, 252, 315
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 4 cut(s) 175, 227, 421, 427
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 2 cut(s) 120, 337
AluBI AGCT 3 cut(s) 36, 167, 283
AluI AGCT 3 cut(s) 36, 167, 283
Alw26I GTCTC 2 cut(s) 301, 454
AlwI GGATC 2 cut(s) 350, 448
ApeKI GCWGC 2 cut(s) 164, 244
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 2 cut(s) 31, 232
AvaII GGWCC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 92
BanII GRGCYC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 176, 231
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 95
BciT130I CCWGG 2 cut(s) 122, 339
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 2 cut(s) 301, 454
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 2 cut(s) 6, 456
BisI GCNGC 2 cut(s) 165, 245
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 2 cut(s) 166, 246
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 3 cut(s) 122, 339, 354
Bme18I GGWCC 1 cut(s) 118
BmgT120I GGNCC 1 cut(s) 118
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 3 cut(s) 122, 339, 354
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 1 cut(s) 420
BmuI ACTGGG 1 cut(s) 140
Bpu1102I GCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 354
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 121, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 146
BseBI CCWGG 2 cut(s) 122, 339
BseDI CCNNGG 2 cut(s) 121, 338
BseGI GGATG 1 cut(s) 378
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 4 cut(s) 23, 195, 219, 312
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 2 cut(s) 176, 231
BshNI GGYRCC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 353
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 301, 454
Bso31I GGTCTC 1 cut(s) 454
Bsp1286I GDGCHC 1 cut(s) 359
Bsp1407I TGTACA 1 cut(s) 250
Bsp143I GATC 2 cut(s) 342, 440
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 2 cut(s) 90, 350
BspCNI CTCAG 4 cut(s) 24, 194, 218, 311
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 2 cut(s) 350, 448
BspT107I GGYRCC 1 cut(s) 92
BspTNI GGTCTC 1 cut(s) 454
BsrGI TGTACA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 146
BssECI CCNNGG 2 cut(s) 121, 338
BssMI GATC 2 cut(s) 342, 440
Bst2UI CCWGG 2 cut(s) 122, 339
Bst4CI ACNGT 1 cut(s) 60
BstAUI TGTACA 1 cut(s) 250
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 5 cut(s) 32, 181, 205, 298, 368
BstENI CCTNNNNNAGG 1 cut(s) 275
BstF5I GGATG 1 cut(s) 378
BstKTI GATC 2 cut(s) 345, 443
BstMAI GTCTC 2 cut(s) 301, 454
BstMBI GATC 2 cut(s) 342, 440
BstNI CCWGG 2 cut(s) 122, 339
BstSCI CCNGG 3 cut(s) 120, 337, 352
BstV1I GCAGC 2 cut(s) 176, 231
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BtsCI GGATG 1 cut(s) 378
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 304
CciI TCATGA 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 118
Csp6I GTAC 4 cut(s) 67, 85, 251, 314
CviAII CATG 1 cut(s) 266
CviJI RGCY 7 cut(s) 36, 167, 185, 200, 244, 283, 357
CviKI_1 RGCY 7 cut(s) 36, 167, 185, 200, 244, 283, 357
CviQI GTAC 4 cut(s) 67, 85, 251, 314
DdeI CTNAG 5 cut(s) 32, 181, 205, 298, 368
DpnI GATC 2 cut(s) 344, 442
DpnII GATC 2 cut(s) 342, 440
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EciI GGCGGA 1 cut(s) 339
Eco24I GRGCYC 1 cut(s) 359
Eco31I GGTCTC 1 cut(s) 454
Eco32I GATATC 1 cut(s) 135
Eco47I GGWCC 1 cut(s) 118
EcoNI CCTNNNNNAGG 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 120, 337
EcoRV GATATC 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 359
FaeI CATG 1 cut(s) 269
FaiI YATR 5 cut(s) 255, 267, 324, 361, 393
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 165, 245
FokI GGATG 1 cut(s) 385
FriOI GRGCYC 1 cut(s) 359
Fsp4HI GCNGC 2 cut(s) 165, 245
FspBI CTAG 2 cut(s) 6, 456
GluI GCNGC 2 cut(s) 165, 245
HapII CCGG 1 cut(s) 353
Hin1II CATG 1 cut(s) 269
HinfI GANTC 1 cut(s) 126
HpaII CCGG 1 cut(s) 353
HphI GGTGA 2 cut(s) 31, 232
Hpy166II GTNNAC 3 cut(s) 19, 232, 251
Hpy188I TCNGA 2 cut(s) 155, 440
Hpy188III TCNNGA 2 cut(s) 130, 266
Hpy8I GTNNAC 3 cut(s) 19, 232, 251
HpyAV CCTTC 2 cut(s) 109, 181
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 1 cut(s) 411
HpyF3I CTNAG 5 cut(s) 32, 181, 205, 298, 368
Hsp92II CATG 1 cut(s) 269
Kzo9I GATC 2 cut(s) 342, 440
LmnI GCTCC 2 cut(s) 57, 280
Lsp1109I GCAGC 2 cut(s) 176, 231
LweI GCATC 1 cut(s) 420
MaeI CTAG 2 cut(s) 6, 456
MalI GATC 2 cut(s) 344, 442
MboI GATC 2 cut(s) 342, 440
MboII GAAGA 1 cut(s) 427
MfeI CAATTG 1 cut(s) 378
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 359
MluCI AATT 2 cut(s) 378, 429
MlyI GAGTC 1 cut(s) 135
MnlI CCTC 4 cut(s) 52, 149, 271, 376
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 3 cut(s) 122, 339, 354
MunI CAATTG 1 cut(s) 378
MvaI CCWGG 2 cut(s) 122, 339
NciI CCSGG 1 cut(s) 354
NdeII GATC 2 cut(s) 342, 440
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 94
PagI TCATGA 1 cut(s) 265
PkrI GCNGC 2 cut(s) 166, 246
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 120, 337
PspGI CCWGG 2 cut(s) 120, 337
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 118
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 4 cut(s) 68, 86, 252, 315
RsaNI GTAC 4 cut(s) 67, 85, 251, 314
SatI GCNGC 2 cut(s) 165, 245
Sau3AI GATC 2 cut(s) 342, 440
Sau96I GGNCC 1 cut(s) 118
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 135
ScrFI CCNGG 3 cut(s) 122, 339, 354
SduI GDGCHC 1 cut(s) 359
SfaNI GCATC 1 cut(s) 420
SinI GGWCC 1 cut(s) 118
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 2 cut(s) 378, 429
SsiI CCGC 2 cut(s) 90, 350
SspMI CTAG 2 cut(s) 6, 456
StyD4I CCNGG 3 cut(s) 120, 337, 352
TaaI ACNGT 1 cut(s) 60
TasI AATT 2 cut(s) 378, 429
TatI WGTACW 2 cut(s) 84, 250
TscAI CASTG 1 cut(s) 153
TseI GCWGC 2 cut(s) 164, 244
TspGWI ACGGA 1 cut(s) 272
TspRI CASTG 1 cut(s) 153
VpaK11BI GGWCC 1 cut(s) 118
XagI CCTNNNNNAGG 1 cut(s) 275
XspI CTAG 2 cut(s) 6, 456
ZrmI AGTACT 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.