RLG00000034586
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0015418
Physical Location & Seq
Forward (+)
45406150 .. 45410720
4571 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034586

Sequence Viewer

Length: 813 bp
ATGAGAGAAAGATTGGGTCTTGGAGAAAGCTCTAAGAAATCAAAAGATGAAGAGAGCGTGAGGAAGAAGAAGAAATCAGAAGCTCAGATCGGAAAAGAAAGCATCGGCCTCTCTTCTGATTTCAAACCCATAATCTCCGCCCCGCCGTCGTCTCACCCTTCATCTTTCCCTTCTTCCGCCTCCTCCGCCGCTTCTTCTTACTCCTCCCTCTTCCCTTCTTCTACTTCGACCGGCGCATTGGCTTATTGCTCATGTTATTGCACGAGTCAGGACCCATCTCTATTTCCTACTTTTACTTTGCGTTTCTGCTACCCCCTGTGCCTACAAGGAAACAAAGAAAGGAAAAAGGCGATGACTAGTGTGCTGGTTCACTTGGTTGTGCTGAGCTTCACCTCGTTCCTGCTCCTACCGTTTTCCCACTCTGCGGATGTTAAGTACTGCGGTGCCAAAGATGACTATGCCGTGAAGGTCCAGGGAGTCAAGATATTGCCTGACCCAGTGGTGAGGGGCAAGCCAGCTACCTTCAATATCTCAGCCACAACAGGTCAAGCCATCTCAGGTGGGAAAGTGGTGATTGAAGTGTACTATTTTGGGCTGCGTGTACATACGGAAACTCATGACCTTTGTGAGGAGCTTTCCTGTCCTGTCTCAGCAGGCAACTTCGTTCTCTCTCATACTCAAACTTTACCTGGGATCACTCCGCCGGGCTCATACAATCTTAGGATGACAATTGAGGATAATCATAACCACAAGTTGTCTTGCATCAGTTTCAACTTCAAAATTATCTTCGGATCTCAGGTCTCTGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

271

Amino Acids

29.18

Weight (kDa)

8.89

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 143 - 261 4.4e-26 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 443
AciI CCGC 8 cut(s) 138, 143, 177, 186, 189, 425, 441, 701
AclWI GGATC 2 cut(s) 701, 799
AfaI GTAC 3 cut(s) 437, 584, 603
AfiI CCNNNNNNNGG 2 cut(s) 424, 628
AgsI TTSAA 5 cut(s) 124, 526, 578, 772, 778
AhlI ACTAGT 1 cut(s) 356
AjnI CCWGG 2 cut(s) 471, 688
AluBI AGCT 5 cut(s) 30, 83, 387, 518, 634
AluI AGCT 5 cut(s) 30, 83, 387, 518, 634
Alw26I GTCTC 3 cut(s) 156, 652, 805
AlwI GGATC 2 cut(s) 701, 799
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 1 cut(s) 595
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 271, 469
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 4 cut(s) 146, 382, 514, 583
AvaII GGWCC 2 cut(s) 271, 469
BanI GGYRCC 1 cut(s) 443
BanII GRGCYC 1 cut(s) 710
BauI CACGAG 1 cut(s) 262
BbvI GCAGC 1 cut(s) 582
BccI CCATC 2 cut(s) 283, 560
BceAI ACGGC 2 cut(s) 130, 446
BciT130I CCWGG 2 cut(s) 473, 690
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 3 cut(s) 156, 652, 805
BcuI ACTAGT 1 cut(s) 356
BfaI CTAG 2 cut(s) 357, 807
BisI GCNGC 2 cut(s) 189, 596
BlpI GCTNAGC 1 cut(s) 383
BlsI GCNGC 2 cut(s) 190, 597
BmcAI AGTACT 1 cut(s) 437
Bme1390I CCNGG 3 cut(s) 473, 690, 705
Bme18I GGWCC 2 cut(s) 271, 469
BmgT120I GGNCC 2 cut(s) 271, 469
BmiI GGNNCC 2 cut(s) 273, 445
BmrFI CCNGG 3 cut(s) 473, 690, 705
BmrI ACTGGG 1 cut(s) 491
BmsI GCATC 2 cut(s) 111, 771
BmuI ACTGGG 1 cut(s) 491
Bpu1102I GCTNAGC 1 cut(s) 383
BpuMI CCSGG 1 cut(s) 705
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 2 cut(s) 472, 689
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 628
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 497
BseBI CCWGG 2 cut(s) 473, 690
BseDI CCNNGG 2 cut(s) 472, 689
BseGI GGATG 2 cut(s) 433, 729
BseLI CCNNNNNNNGG 2 cut(s) 424, 628
BseMII CTCAG 6 cut(s) 98, 374, 546, 570, 663, 809
BseNI ACTGG 1 cut(s) 497
BseRI GAGGAG 3 cut(s) 172, 193, 644
BseXI GCAGC 1 cut(s) 582
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 108
BshNI GGYRCC 1 cut(s) 443
BsiEI CGRYCG 1 cut(s) 231
BsiSI CCGG 2 cut(s) 231, 704
BslI CCNNNNNNNGG 2 cut(s) 424, 628
BsmAI GTCTC 3 cut(s) 156, 652, 805
BsmBI CGTCTC 1 cut(s) 156
BsnI GGCC 1 cut(s) 108
Bso31I GGTCTC 1 cut(s) 805
Bsp1286I GDGCHC 1 cut(s) 710
Bsp1407I TGTACA 1 cut(s) 601
Bsp143I GATC 3 cut(s) 87, 693, 791
Bsp1720I GCTNAGC 1 cut(s) 383
BspACI CCGC 8 cut(s) 138, 143, 177, 186, 189, 425, 441, 701
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 6 cut(s) 97, 375, 545, 569, 662, 808
BspHI TCATGA 1 cut(s) 616
BspLI GGNNCC 2 cut(s) 273, 445
BspPI GGATC 2 cut(s) 701, 799
BspT107I GGYRCC 1 cut(s) 443
BspTNI GGTCTC 1 cut(s) 805
BsrFI RCCGGY 1 cut(s) 230
BsrGI TGTACA 1 cut(s) 601
BsrI ACTGG 1 cut(s) 497
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 2 cut(s) 472, 689
BssMI GATC 3 cut(s) 87, 693, 791
BssSI CACGAG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 2 cut(s) 473, 690
Bst4CI ACNGT 1 cut(s) 411
Bst6I CTCTTC 3 cut(s) 45, 118, 215
BstAUI TGTACA 1 cut(s) 601
BstC8I GCNNGC 3 cut(s) 512, 516, 655
BstDEI CTNAG 8 cut(s) 33, 84, 383, 532, 556, 649, 719, 795
BstENI CCTNNNNNAGG 1 cut(s) 626
BstF5I GGATG 2 cut(s) 433, 729
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 3 cut(s) 90, 696, 794
BstMAI GTCTC 3 cut(s) 156, 652, 805
BstMBI GATC 3 cut(s) 87, 693, 791
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstNI CCWGG 2 cut(s) 473, 690
BstSCI CCNGG 3 cut(s) 471, 688, 703
BstV1I GCAGC 1 cut(s) 582
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 1 cut(s) 108
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 2 cut(s) 433, 729
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 3 cut(s) 512, 516, 655
CciI TCATGA 1 cut(s) 616
CfoI GCGC 1 cut(s) 236
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 2 cut(s) 271, 469
Csp6I GTAC 3 cut(s) 436, 583, 602
CviAII CATG 2 cut(s) 252, 617
CviQI GTAC 3 cut(s) 436, 583, 602
DdeI CTNAG 8 cut(s) 33, 84, 383, 532, 556, 649, 719, 795
DpnI GATC 3 cut(s) 89, 695, 793
DpnII GATC 3 cut(s) 87, 693, 791
Eam1104I CTCTTC 3 cut(s) 45, 118, 215
EarI CTCTTC 3 cut(s) 45, 118, 215
EciI GGCGGA 4 cut(s) 127, 166, 175, 690
Eco24I GRGCYC 1 cut(s) 710
Eco31I GGTCTC 1 cut(s) 805
Eco47I GGWCC 2 cut(s) 271, 469
EcoNI CCTNNNNNAGG 1 cut(s) 626
EcoO109I RGGNCCY 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 471, 688
EcoT38I GRGCYC 1 cut(s) 710
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 2 cut(s) 255, 620
FaiI YATR 8 cut(s) 131, 253, 459, 606, 618, 675, 712, 744
FatI CATG 2 cut(s) 251, 616
FauI CCCGC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 189, 596
FokI GGATG 2 cut(s) 440, 736
FriOI GRGCYC 1 cut(s) 710
Fsp4HI GCNGC 2 cut(s) 189, 596
FspBI CTAG 2 cut(s) 357, 807
GlaI GCGC 1 cut(s) 235
GluI GCNGC 2 cut(s) 189, 596
HaeIII GGCC 1 cut(s) 108
HapII CCGG 2 cut(s) 231, 704
HhaI GCGC 1 cut(s) 236
Hin1II CATG 2 cut(s) 255, 620
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HinfI GANTC 2 cut(s) 265, 477
HpaII CCGG 2 cut(s) 231, 704
HphI GGTGA 4 cut(s) 146, 382, 514, 583
Hpy166II GTNNAC 3 cut(s) 370, 583, 602
Hpy188I TCNGA 5 cut(s) 79, 87, 92, 118, 791
Hpy188III TCNNGA 3 cut(s) 269, 481, 617
Hpy8I GTNNAC 3 cut(s) 370, 583, 602
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 5 cut(s) 168, 180, 225, 460, 532
HpyCH4III ACNGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 261, 762
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 8 cut(s) 33, 84, 383, 532, 556, 649, 719, 795
Hsp92II CATG 2 cut(s) 255, 620
HspAI GCGC 1 cut(s) 234
Kzo9I GATC 3 cut(s) 87, 693, 791
LmnI GCTCC 2 cut(s) 408, 631
Lsp1109I GCAGC 1 cut(s) 582
LweI GCATC 2 cut(s) 111, 771
MaeI CTAG 2 cut(s) 357, 807
MalI GATC 3 cut(s) 89, 695, 793
MboI GATC 3 cut(s) 87, 693, 791
MfeI CAATTG 1 cut(s) 729
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 2 cut(s) 729, 780
MlyI GAGTC 2 cut(s) 274, 486
MseI TTAA 1 cut(s) 432
MspI CCGG 2 cut(s) 231, 704
MspR9I CCNGG 3 cut(s) 473, 690, 705
MunI CAATTG 1 cut(s) 729
MvaI CCWGG 2 cut(s) 473, 690
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 1 cut(s) 705
NdeII GATC 3 cut(s) 87, 693, 791
NlaIII CATG 2 cut(s) 255, 620
NlaIV GGNNCC 2 cut(s) 273, 445
PagI TCATGA 1 cut(s) 616
PkrI GCNGC 2 cut(s) 190, 597
PleI GAGTC 2 cut(s) 273, 485
PpsI GAGTC 2 cut(s) 273, 485
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
Psp6I CCWGG 2 cut(s) 471, 688
PspGI CCWGG 2 cut(s) 471, 688
PspN4I GGNNCC 2 cut(s) 273, 445
PspPI GGNCC 2 cut(s) 271, 469
PspPPI RGGWCCY 1 cut(s) 271
PsuI RGATCY 1 cut(s) 791
RsaI GTAC 3 cut(s) 437, 584, 603
RsaNI GTAC 3 cut(s) 436, 583, 602
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 2 cut(s) 189, 596
Sau3AI GATC 3 cut(s) 87, 693, 791
Sau96I GGNCC 2 cut(s) 271, 469
ScaI AGTACT 1 cut(s) 437
SchI GAGTC 2 cut(s) 274, 486
ScrFI CCNGG 3 cut(s) 473, 690, 705
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 2 cut(s) 111, 771
SinI GGWCC 2 cut(s) 271, 469
SpeI ACTAGT 1 cut(s) 356
Sse9I AATT 2 cut(s) 729, 780
SsiI CCGC 8 cut(s) 138, 143, 177, 186, 189, 425, 441, 701
SspMI CTAG 2 cut(s) 357, 807
StyD4I CCNGG 3 cut(s) 471, 688, 703
TaaI ACNGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 227
TasI AATT 2 cut(s) 729, 780
TatI WGTACW 3 cut(s) 435, 582, 601
TauI GCSGC 1 cut(s) 191
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 1 cut(s) 504
TseI GCWGC 1 cut(s) 595
TspDTI ATGAA 2 cut(s) 63, 150
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 2 cut(s) 271, 469
XagI CCTNNNNNAGG 1 cut(s) 626
XspI CTAG 2 cut(s) 357, 807
ZrmI AGTACT 1 cut(s) 437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.