Rorug05G0242700
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015418
Physical Location & Seq
Forward (+)
25967813 .. 25970952
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0242700.1

Sequence Viewer

Length: 1572 bp
ATGGATCAACAAATGGTGGATTTAGAGTCCAATAGAAGACCAAACATTGATGAAGAATCCCCAGCCATTTTCAAGAAAGCAATTCGACCTGTCACACTGAAGTTTGAGGATGTGGTTTACACGATCAAAGTCGAGTCGGATGGAATGTCATGGCTTCGAAAGAACACCAACAACTCCGATTCAGACAAACTGATCCTGAAGGGTGTTAGTGGTGTGGTTAAACCAGGTGAAATGCTCGCCATGCTAGGCCCATCGGGAAGTGGCAAAACAACACTCCTAACCGCGCTTGGAGGTCGTTTAGGTGGAAAACTCAGCGGAGGCATAACCTACAACAACAAGCCCTTCTCAAACTCAATGAAAAGAAACACTGGTTTTGTGACCCAAGACGATTTTCTCTATCCCCATTTGACCGTGACTGAGACACTCATCTTCACAGCCCTTCTGCGCTTGCCCAACACTCTCACTAAGGCAGAGAAGACGCTTCAAGCCGAGGCTGTGATAACACAGCTCGAATTGACCAAGTGCAAGAACAGCATCATCGGGGATGAGCTTTTGAGGGGTGTTTCGGGCGGAGAGAGGAGAAGGGTTAGTATAGGACAAGAATTGCTTATAAACCCTAGCTTGCTGTTCTTGGACGAACCCACTTCGGGCCTGGACTCGACCACAGCTCAAAGGATCGTCAAGGCATTGTGGGACTTGGCCAATGGAAGAAGAACCATTGTTATGACTATACACCAGCCTTCAAGCCGATTGTTCTACATGTTTCATAAGGTGATGCTCTTATCGGAAGGGAATGCTTTGTATTTCGGGAACCTTTCCGGCGTCATGAATTACTTTTCCGGCATCGGATATGCTCCGCTGGTTGCTATGAACCCTGCAGATTTTCTCCTGGACCTAGCCAACGGTCTGACACCTGATGAATCAAATGAAAACAAGAGTGAAGTGAAGCAGAGTTTGGCTTTGGCCTACAAGCGGAACCTTGAAGATAAACTGAAAGCAGTACTTGAAGAAACCAGCTGCGACTGCAATAATAATCAGTTTCAAGATTCATCATCAGTGGACAAGAAATTTGGGAAATGGTCCACAACTTGGTGGCAGCAATTTACTGTCTTGTTCAGGAGAGGAGTGAAGGAGAGGAAGCACGAGTCCTTCTCTGGCCTCAAGATTGGACAGGTAGTTGCTGTGGCTCTTCTCTGTGGGCTTCTGTGGTGGCAGTCAGATACTTCCCACTTACAAGATCAGATTGGGCTTCTGTTCTTTATGTCTGGATTTTGGGGTTTCTTCCCTCTCTTCCAAGCAATCTTCACGTTCCCGCCAGAACGCAAAATGCTTGAGAAGGAACGGACTTCTGGCACCTACCGACTTTCCTCCTACTTCATGTCAAGAATCATCGGTGACCTCCCCATGGAACTTGTCCTTCCCACTTTATTTATCACCATAACATATTGGATGGCAGGTTTCAAACCCACGCATGTGAACTTTTTTCACACCTTGCTCGTTCTTCTCCTCCTTGTCTTAGTAGCTCAAGGAATGGGACTTGCTCTTGGCGCTGTCGTCATGGACCAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

523

Amino Acids

58.5

Weight (kDa)

8.78

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 66 - 216 8.7e-28 ABC transporter
ABC2_membrane_7 PF19055 245 - 366 4.9e-10 ABC-2 type transporter
ABC2_membrane PF01061 366 - 522 2.7e-36 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 611
Acc36I ACCTGC 1 cut(s) 1445
AccB1I GGYRCC 1 cut(s) 1352
AccB7I CCANNNNNTGG 1 cut(s) 1089
AccII CGCG 1 cut(s) 284
AciI CCGC 6 cut(s) 282, 315, 570, 857, 973, 1313
AclWI GGATC 3 cut(s) 12, 187, 683
AcoI YGGCCR 1 cut(s) 699
AcsI RAATTY 1 cut(s) 1067
AcuI CTGAAG 2 cut(s) 119, 218
AcyI GRCGYC 1 cut(s) 822
AfaI GTAC 1 cut(s) 1002
AfiI CCNNNNNNNGG 4 cut(s) 647, 972, 1089, 1405
AflIII ACRYGT 1 cut(s) 759
AgsI TTSAA 7 cut(s) 73, 485, 744, 983, 1007, 1043, 1462
AjnI CCWGG 3 cut(s) 223, 651, 888
AjuI GAANNNNNNNTTGG 4 cut(s) 375, 407, 938, 970
AleI CACNNNNGTG 1 cut(s) 1472
AluBI AGCT 6 cut(s) 508, 550, 621, 668, 1017, 1523
AluI AGCT 6 cut(s) 508, 550, 621, 668, 1017, 1523
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 3 cut(s) 12, 187, 683
AoxI GGCC 5 cut(s) 247, 649, 699, 963, 1156
ApeKI GCWGC 2 cut(s) 1017, 1096
ApoI RAATTY 1 cut(s) 1067
ArsI GACNNNNNNTTYG 2 cut(s) 1052, 1084
AspLEI GCGC 3 cut(s) 286, 447, 1550
AspS9I GGNCC 5 cut(s) 248, 649, 892, 1080, 1561
AsuHPI GGTGA 4 cut(s) 239, 784, 1406, 1426
AsuII TTCGAA 1 cut(s) 157
AvaII GGWCC 3 cut(s) 892, 1080, 1561
BalI TGGCCA 1 cut(s) 701
BanI GGYRCC 1 cut(s) 1352
BauI CACGAG 1 cut(s) 1142
BbsI GAAGAC 2 cut(s) 43, 482
BbvI GCAGC 2 cut(s) 1004, 1108
BccI CCATC 3 cut(s) 134, 259, 1444
BciT130I CCWGG 3 cut(s) 225, 653, 890
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 3 cut(s) 245, 618, 896
BfmI CTRYAG 1 cut(s) 876
BfoI RGCGCY 1 cut(s) 1551
BfuAI ACCTGC 1 cut(s) 1445
BisI GCNGC 2 cut(s) 1018, 1097
BlsI GCNGC 2 cut(s) 1019, 1098
BmcAI AGTACT 1 cut(s) 1002
Bme1390I CCNGG 3 cut(s) 225, 653, 890
Bme18I GGWCC 3 cut(s) 892, 1080, 1561
BmgT120I GGNCC 5 cut(s) 248, 649, 892, 1080, 1561
BmiI GGNNCC 3 cut(s) 812, 977, 1354
BmrFI CCNGG 3 cut(s) 225, 653, 890
BmsI GCATC 3 cut(s) 543, 765, 852
BpiI GAAGAC 2 cut(s) 43, 482
BplI GAGNNNNNCTC 2 cut(s) 1136, 1168
Bpu14I TTCGAA 1 cut(s) 157
BpuEI CTTGAG 3 cut(s) 1145, 1352, 1509
BsaHI GRCGYC 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 489, 1404
Bsc4I CCNNNNNNNGG 4 cut(s) 647, 972, 1089, 1405
Bse1I ACTGG 1 cut(s) 373
BseBI CCWGG 3 cut(s) 225, 653, 890
BseDI CCNNGG 2 cut(s) 489, 1404
BseGI GGATG 4 cut(s) 115, 145, 550, 1455
BseLI CCNNNNNNNGG 4 cut(s) 647, 972, 1089, 1405
BseMII CTCAG 2 cut(s) 325, 408
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 3 cut(s) 592, 1137, 1496
BseXI GCAGC 2 cut(s) 1004, 1108
BseYI CCCAGC 1 cut(s) 61
Bsh1236I CGCG 1 cut(s) 284
BshFI GGCC 5 cut(s) 249, 651, 701, 965, 1158
BshNI GGYRCC 1 cut(s) 1352
BsiSI CCGG 2 cut(s) 819, 840
BslFI GGGAC 2 cut(s) 707, 1548
BslI CCNNNNNNNGG 4 cut(s) 647, 972, 1089, 1405
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 2 cut(s) 707, 1548
BsmI GAATGC 1 cut(s) 799
BsnI GGCC 5 cut(s) 249, 651, 701, 965, 1158
Bsp119I TTCGAA 1 cut(s) 157
Bsp143I GATC 5 cut(s) 4, 123, 192, 675, 1237
Bsp19I CCATGG 1 cut(s) 1404
BspACI CCGC 6 cut(s) 282, 315, 570, 857, 973, 1313
BspANI GGCC 5 cut(s) 249, 651, 701, 965, 1158
BspCNI CTCAG 2 cut(s) 324, 409
BspFNI CGCG 1 cut(s) 284
BspHI TCATGA 1 cut(s) 825
BspLI GGNNCC 3 cut(s) 812, 977, 1354
BspMAI CTGCAG 1 cut(s) 880
BspMI ACCTGC 1 cut(s) 1445
BspPI GGATC 3 cut(s) 12, 187, 683
BspQI GCTCTTC 1 cut(s) 1194
BspT104I TTCGAA 1 cut(s) 157
BspT107I GGYRCC 1 cut(s) 1352
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 2 cut(s) 489, 1404
BssMI GATC 5 cut(s) 4, 123, 192, 675, 1237
BssNI GRCGYC 1 cut(s) 822
BssSI CACGAG 1 cut(s) 1142
BssT1I CCWWGG 1 cut(s) 1404
Bst2BI CACGAG 1 cut(s) 1142
Bst2UI CCWGG 3 cut(s) 225, 653, 890
Bst4CI ACNGT 3 cut(s) 412, 905, 1108
Bst6I CTCTTC 2 cut(s) 1194, 1295
BstACI GRCGYC 1 cut(s) 822
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 3 cut(s) 237, 449, 623
BstDEI CTNAG 4 cut(s) 311, 417, 465, 1516
BstDSI CCRYGG 1 cut(s) 1404
BstEII GGTNACC 1 cut(s) 1394
BstF5I GGATG 4 cut(s) 115, 145, 550, 1455
BstFNI CGCG 1 cut(s) 284
BstH2I RGCGCY 1 cut(s) 1551
BstHHI GCGC 3 cut(s) 286, 447, 1550
BstKTI GATC 5 cut(s) 7, 126, 195, 678, 1240
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 5 cut(s) 4, 123, 192, 675, 1237
BstMWI GCNNNNNNNGC 4 cut(s) 241, 531, 1023, 1547
BstNI CCWGG 3 cut(s) 225, 653, 890
BstNSI RCATGY 2 cut(s) 763, 1475
BstPI GGTNACC 1 cut(s) 1394
BstSCI CCNGG 3 cut(s) 223, 651, 888
BstSFI CTRYAG 1 cut(s) 876
BstUI CGCG 1 cut(s) 284
BstV1I GCAGC 2 cut(s) 1004, 1108
BstV2I GAAGAC 2 cut(s) 43, 482
BsuRI GGCC 5 cut(s) 249, 651, 701, 965, 1158
BtgI CCRYGG 1 cut(s) 1404
BtsCI GGATG 4 cut(s) 115, 145, 550, 1455
BtsIMutI CAGTG 3 cut(s) 95, 366, 1062
BveI ACCTGC 1 cut(s) 1445
Cac8I GCNNGC 3 cut(s) 237, 449, 623
CciI TCATGA 1 cut(s) 825
CfoI GCGC 3 cut(s) 286, 447, 1550
Cfr13I GGNCC 5 cut(s) 248, 649, 892, 1080, 1561
CseI GACGC 2 cut(s) 487, 811
CsiI ACCWGGT 1 cut(s) 223
Csp6I GTAC 1 cut(s) 1001
CviAII CATG 8 cut(s) 150, 241, 760, 826, 1378, 1405, 1472, 1558
CviQI GTAC 1 cut(s) 1001
DdeI CTNAG 4 cut(s) 311, 417, 465, 1516
DpnI GATC 5 cut(s) 6, 125, 194, 677, 1239
DpnII GATC 5 cut(s) 4, 123, 192, 675, 1237
EaeI YGGCCR 1 cut(s) 699
Eam1104I CTCTTC 2 cut(s) 1194, 1295
EarI CTCTTC 2 cut(s) 1194, 1295
EciI GGCGGA 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 1404
Eco47I GGWCC 3 cut(s) 892, 1080, 1561
Eco57I CTGAAG 2 cut(s) 119, 218
Eco91I GGTNACC 1 cut(s) 1394
EcoO65I GGTNACC 1 cut(s) 1394
EcoRII CCWGG 3 cut(s) 223, 651, 888
EcoT14I CCWWGG 1 cut(s) 1404
ErhI CCWWGG 1 cut(s) 1404
FaeI CATG 8 cut(s) 153, 244, 763, 829, 1381, 1408, 1475, 1561
FalI AAGNNNNNCTT 4 cut(s) 591, 623, 987, 1019
FaqI GGGAC 2 cut(s) 707, 1548
FatI CATG 8 cut(s) 149, 240, 759, 825, 1377, 1404, 1471, 1557
FauI CCCGC 1 cut(s) 1320
Fnu4HI GCNGC 2 cut(s) 1018, 1097
FokI GGATG 4 cut(s) 122, 152, 557, 1462
Fsp4HI GCNGC 2 cut(s) 1018, 1097
FspBI CTAG 3 cut(s) 245, 618, 896
GlaI GCGC 3 cut(s) 285, 446, 1549
GluI GCNGC 2 cut(s) 1018, 1097
GsaI CCCAGC 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 1551
HaeIII GGCC 5 cut(s) 249, 651, 701, 965, 1158
HapII CCGG 2 cut(s) 819, 840
HgaI GACGC 2 cut(s) 487, 811
HhaI GCGC 3 cut(s) 286, 447, 1550
Hin1I GRCGYC 1 cut(s) 822
Hin1II CATG 8 cut(s) 153, 244, 763, 829, 1381, 1408, 1475, 1561
Hin6I GCGC 3 cut(s) 284, 445, 1548
HinP1I GCGC 3 cut(s) 284, 445, 1548
HinfI GANTC 9 cut(s) 26, 56, 134, 179, 656, 920, 1046, 1145, 1386
HpaII CCGG 2 cut(s) 819, 840
HphI GGTGA 4 cut(s) 239, 784, 1406, 1426
Hpy166II GTNNAC 4 cut(s) 118, 1060, 1083, 1477
Hpy188I TCNGA 8 cut(s) 139, 178, 184, 787, 848, 909, 1219, 1242
Hpy8I GTNNAC 4 cut(s) 118, 1060, 1083, 1477
HpyCH4III ACNGT 3 cut(s) 412, 905, 1108
HpyCH4IV ACGT 1 cut(s) 1307
HpyCH4V TGCA 3 cut(s) 525, 878, 1026
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 531, 1023, 1547
HpyF3I CTNAG 4 cut(s) 311, 417, 465, 1516
HpySE526I ACGT 1 cut(s) 1307
Hsp92I GRCGYC 1 cut(s) 822
Hsp92II CATG 8 cut(s) 153, 244, 763, 829, 1381, 1408, 1475, 1561
HspAI GCGC 3 cut(s) 284, 445, 1548
Kzo9I GATC 5 cut(s) 4, 123, 192, 675, 1237
LguI GCTCTTC 1 cut(s) 1194
LmnI GCTCC 1 cut(s) 859
Lsp1109I GCAGC 2 cut(s) 1004, 1108
LweI GCATC 3 cut(s) 543, 765, 852
MabI ACCWGGT 1 cut(s) 223
MaeI CTAG 3 cut(s) 245, 618, 896
MaeII ACGT 1 cut(s) 1307
MaeIII GTNAC 4 cut(s) 91, 376, 412, 1394
MalI GATC 5 cut(s) 6, 125, 194, 677, 1239
MboI GATC 5 cut(s) 4, 123, 192, 675, 1237
MlsI TGGCCA 1 cut(s) 701
MluCI AATT 6 cut(s) 81, 512, 602, 829, 1067, 1100
MluNI TGGCCA 1 cut(s) 701
MlyI GAGTC 4 cut(s) 35, 143, 650, 1154
MmeI TCCRAC 1 cut(s) 117
Mox20I TGGCCA 1 cut(s) 701
MscI TGGCCA 1 cut(s) 701
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 2 cut(s) 722, 1472
Msp20I TGGCCA 1 cut(s) 701
MspA1I CMGCKG 3 cut(s) 315, 859, 1017
MspI CCGG 2 cut(s) 819, 840
MspR9I CCNGG 3 cut(s) 225, 653, 890
Mva1269I GAATGC 1 cut(s) 799
MvaI CCWGG 3 cut(s) 225, 653, 890
MvnI CGCG 1 cut(s) 284
MwoI GCNNNNNNNGC 4 cut(s) 241, 531, 1023, 1547
NcoI CCATGG 1 cut(s) 1404
NdeII GATC 5 cut(s) 4, 123, 192, 675, 1237
NlaIII CATG 8 cut(s) 153, 244, 763, 829, 1381, 1408, 1475, 1561
NlaIV GGNNCC 3 cut(s) 812, 977, 1354
NmeAIII GCCGAG 1 cut(s) 514
NmuCI GTSAC 4 cut(s) 91, 376, 412, 1394
NspI RCATGY 2 cut(s) 763, 1475
NspV TTCGAA 1 cut(s) 157
OliI CACNNNNGTG 1 cut(s) 1472
PagI TCATGA 1 cut(s) 825
PciI ACATGT 1 cut(s) 759
PciSI GCTCTTC 1 cut(s) 1194
PctI GAATGC 1 cut(s) 799
PfeI GAWTC 5 cut(s) 56, 179, 920, 1046, 1386
PflMI CCANNNNNTGG 1 cut(s) 1089
PfoI TCCNGGA 1 cut(s) 888
PkrI GCNGC 2 cut(s) 1019, 1098
PleI GAGTC 4 cut(s) 34, 142, 650, 1153
PpsI GAGTC 4 cut(s) 34, 142, 650, 1153
PscI ACATGT 1 cut(s) 759
PsiI TTATAA 1 cut(s) 611
Psp6I CCWGG 3 cut(s) 223, 651, 888
PspEI GGTNACC 1 cut(s) 1394
PspFI CCCAGC 1 cut(s) 61
PspGI CCWGG 3 cut(s) 223, 651, 888
PspN4I GGNNCC 3 cut(s) 812, 977, 1354
PspPI GGNCC 5 cut(s) 248, 649, 892, 1080, 1561
PstI CTGCAG 1 cut(s) 880
PvuII CAGCTG 1 cut(s) 1017
RsaI GTAC 1 cut(s) 1002
RsaNI GTAC 1 cut(s) 1001
RseI CAYNNNNRTG 2 cut(s) 722, 1472
SapI GCTCTTC 1 cut(s) 1194
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 1018, 1097
Sau3AI GATC 5 cut(s) 4, 123, 192, 675, 1237
Sau96I GGNCC 5 cut(s) 248, 649, 892, 1080, 1561
ScaI AGTACT 1 cut(s) 1002
SchI GAGTC 4 cut(s) 35, 143, 650, 1154
ScrFI CCNGG 3 cut(s) 225, 653, 890
SexAI ACCWGGT 1 cut(s) 223
SfaNI GCATC 3 cut(s) 543, 765, 852
SfcI CTRYAG 1 cut(s) 876
SfuI TTCGAA 1 cut(s) 157
SinI GGWCC 3 cut(s) 892, 1080, 1561
SmiMI CAYNNNNRTG 2 cut(s) 722, 1472
SmlI CTYRAG 3 cut(s) 1160, 1331, 1524
SmoI CTYRAG 3 cut(s) 1160, 1331, 1524
Sse9I AATT 6 cut(s) 81, 512, 602, 829, 1067, 1100
SsiI CCGC 6 cut(s) 282, 315, 570, 857, 973, 1313
SspMI CTAG 3 cut(s) 245, 618, 896
StyD4I CCNGG 3 cut(s) 223, 651, 888
StyI CCWWGG 1 cut(s) 1404
TaaI ACNGT 3 cut(s) 412, 905, 1108
TaiI ACGT 1 cut(s) 1310
TaqI TCGA 5 cut(s) 85, 132, 157, 510, 659
TasI AATT 6 cut(s) 81, 512, 602, 829, 1067, 1100
TatI WGTACW 1 cut(s) 1000
TfiI GAWTC 5 cut(s) 56, 179, 920, 1046, 1386
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 3 cut(s) 102, 373, 1062
TseFI GTSAC 4 cut(s) 91, 376, 412, 1394
TseI GCWGC 2 cut(s) 1017, 1096
Tsp45I GTSAC 4 cut(s) 91, 376, 412, 1394
TspDTI ATGAA 9 cut(s) 66, 371, 755, 842, 884, 933, 942, 1038, 1366
TspGWI ACGGA 1 cut(s) 1357
TspRI CASTG 3 cut(s) 102, 373, 1062
Van91I CCANNNNNTGG 1 cut(s) 1089
VpaK11BI GGWCC 3 cut(s) 892, 1080, 1561
XapI RAATTY 1 cut(s) 1067
XceI RCATGY 2 cut(s) 763, 1475
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XspI CTAG 3 cut(s) 245, 618, 896
ZrmI AGTACT 1 cut(s) 1002
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.