MD03G1159400.v1.1
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0015418
Physical Location & Seq
Forward (+)
18977136 .. 18980765
3630 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1159400.v1.1.491

Sequence Viewer

Length: 459 bp
ATGGCGGTGCTTGCCCACTCGATTGTGATTTGCTTCGCCTTCTGCCTCCTCCTACCACGCACTCAGTCTACTGATGTCAAATATTGCAACCAGAAAGATGAGTACGCTGTGAAGGTCCAGGGAGTCAAAATATTGCCTGACCCAGTGGTGAGAGGCAAGCCAGTTACCTTTAGCATCTCTGCCACAACAGGTCAAACAATTTCCAGTGGGAAAGTGGTGATCGAGGTTTACTATTTTGGGATTCGTGTGCATGTAGAAACCCAGAATTTTTGTGAAAAGTTATCCTGCCCAGTTTCAGCAGGCAACTTTCTGCTTTCTCACACCCAAACCTTACCTGGGATCACTCCGCCTGGATCTTACAATCTGAAGATGACAATCAAGGATGATAAAAACAAGGAGTTGTCTTGCATCAGTTTCAACTTCAAAATTGTCTTGCGGTCGCTGGTGTCTGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

153

Amino Acids

16.69

Weight (kDa)

9.07

Isoelectric Point (pI)

26.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 24 - 143 6.1e-27 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 68
AciI CCGC 3 cut(s) 5, 347, 436
AclWI GGATC 2 cut(s) 347, 361
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 336
AgsI TTSAA 2 cut(s) 418, 424
AjnI CCWGG 3 cut(s) 117, 334, 349
AlwI GGATC 2 cut(s) 347, 361
ApoI RAATTY 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 2 cut(s) 160, 229
AvaII GGWCC 1 cut(s) 115
BciT130I CCWGG 3 cut(s) 119, 336, 351
BfaI CTAG 1 cut(s) 453
Bme1390I CCNGG 3 cut(s) 119, 336, 351
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmrFI CCNGG 3 cut(s) 119, 336, 351
BmrI ACTGGG 2 cut(s) 137, 284
BmsI GCATC 2 cut(s) 183, 417
BmuI ACTGGG 2 cut(s) 137, 284
BsaBI GATNNNNATC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 118, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 336
Bse1I ACTGG 4 cut(s) 143, 161, 204, 290
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 3 cut(s) 119, 336, 351
BseDI CCNNGG 2 cut(s) 118, 335
BseGI GGATG 1 cut(s) 388
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 4 cut(s) 143, 161, 204, 290
BseRI GAGGAG 1 cut(s) 38
Bsh1285I CGRYCG 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 440
BslI CCNNNNNNNGG 1 cut(s) 336
Bsp143I GATC 3 cut(s) 219, 339, 353
BspACI CCGC 3 cut(s) 5, 347, 436
BspCNI CTCAG 1 cut(s) 76
BspPI GGATC 2 cut(s) 347, 361
BsrI ACTGG 4 cut(s) 143, 161, 204, 290
BssECI CCNNGG 2 cut(s) 118, 335
BssMI GATC 3 cut(s) 219, 339, 353
Bst2UI CCWGG 3 cut(s) 119, 336, 351
BstC8I GCNNGC 3 cut(s) 12, 158, 301
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 3 cut(s) 222, 342, 356
BstMBI GATC 3 cut(s) 219, 339, 353
BstMCI CGRYCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 119, 336, 351
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 3 cut(s) 117, 334, 349
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 150, 211
Cac8I GCNNGC 3 cut(s) 12, 158, 301
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 251
CviJI RGCY 1 cut(s) 160
CviKI_1 RGCY 1 cut(s) 160
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 63
DpnI GATC 3 cut(s) 221, 341, 355
DpnII GATC 3 cut(s) 219, 339, 353
EciI GGCGGA 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 386
EcoRII CCWGG 3 cut(s) 117, 334, 349
FaeI CATG 1 cut(s) 254
FaiI YATR 1 cut(s) 252
FatI CATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 68
FokI GGATG 1 cut(s) 395
FspBI CTAG 1 cut(s) 453
Hin1II CATG 1 cut(s) 254
HinfI GANTC 2 cut(s) 123, 241
HphI GGTGA 2 cut(s) 160, 229
Hpy166II GTNNAC 2 cut(s) 69, 229
Hpy188I TCNGA 1 cut(s) 366
Hpy8I GTNNAC 2 cut(s) 69, 229
HpyAV CCTTC 2 cut(s) 49, 106
HpyCH4V TGCA 3 cut(s) 87, 250, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 63
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 3 cut(s) 219, 339, 353
LweI GCATC 2 cut(s) 183, 417
MaeI CTAG 1 cut(s) 453
MaeIII GTNAC 1 cut(s) 163
MalI GATC 3 cut(s) 221, 341, 355
MboI GATC 3 cut(s) 219, 339, 353
MboII GAAGA 1 cut(s) 379
MflI RGATCY 1 cut(s) 353
MluCI AATT 3 cut(s) 198, 265, 426
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 4 cut(s) 56, 59, 146, 217
MspR9I CCNGG 3 cut(s) 119, 336, 351
MvaI CCWGG 3 cut(s) 119, 336, 351
MwoI GCNNNNNNNGC 1 cut(s) 11
NdeII GATC 3 cut(s) 219, 339, 353
NlaIII CATG 1 cut(s) 254
NspI RCATGY 1 cut(s) 254
PfeI GAWTC 1 cut(s) 241
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp6I CCWGG 3 cut(s) 117, 334, 349
PspGI CCWGG 3 cut(s) 117, 334, 349
PspPI GGNCC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
Sau3AI GATC 3 cut(s) 219, 339, 353
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 3 cut(s) 119, 336, 351
SetI ASST 6 cut(s) 117, 170, 193, 228, 332, 337
SfaNI GCATC 2 cut(s) 183, 417
SinI GGWCC 1 cut(s) 115
Sse9I AATT 3 cut(s) 198, 265, 426
SsiI CCGC 3 cut(s) 5, 347, 436
SspI AATATT 2 cut(s) 83, 132
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 3 cut(s) 117, 334, 349
TaqI TCGA 2 cut(s) 20, 222
TasI AATT 3 cut(s) 198, 265, 426
TfiI GAWTC 1 cut(s) 241
TscAI CASTG 2 cut(s) 150, 211
TspRI CASTG 2 cut(s) 150, 211
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 2 cut(s) 211, 332
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.