RchiOBHm_Chr5g0049041
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015418
Physical Location & Seq
Forward (+)
46474703 .. 46479563
4861 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32672

Sequence Viewer

Length: 453 bp
ATGACTAGTGTGCTGGTTGTGCTGAGCTTCACCTCGTTCCTGCTCCTACCGTTTTCCCACTCTGCGGATGTTAAGTACTGCGGTGCCAAAGATGACTATGCCGTGAAGGTCCAGGGAGTCAAGATATCGCCTGACCCAGTGGTGAGAGGCAAGGCAGCTACCTTCAACATCTCAGCCACAACAGGTCAAGCCATCTCAGGTGGGAAAGTGGTGATTGAAGTTTACTATTTTGGGCTGCGTGTACATACGGAAACTCATGACCTTTGTGAGGAGCTTTCCTGTCCTGTCTCAGCAGGCAACTTTGTACTCTCTCATACTCAAACTTTACCTGGGATCACTCCGCCGGGCTCATACAATCTTAGGATGACAATTGAGGATAATCATAACCACAAGTTGTCTTGCATCAGTTTCAACTTCAAAATTATCTTCGGATCTCTGGTCTCTGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

150

Amino Acids

16.17

Weight (kDa)

7.0

Isoelectric Point (pI)

35.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 23 - 141 1.2e-27 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 83
AciI CCGC 3 cut(s) 65, 81, 341
AclWI GGATC 2 cut(s) 341, 439
AfaI GTAC 3 cut(s) 77, 243, 306
AfiI CCNNNNNNNGG 2 cut(s) 64, 268
AgsI TTSAA 4 cut(s) 166, 218, 412, 418
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 2 cut(s) 111, 328
AluBI AGCT 3 cut(s) 27, 158, 274
AluI AGCT 3 cut(s) 27, 158, 274
Alw26I GTCTC 2 cut(s) 292, 445
AlwI GGATC 2 cut(s) 341, 439
ApeKI GCWGC 2 cut(s) 155, 235
AspS9I GGNCC 1 cut(s) 109
AsuC2I CCSGG 1 cut(s) 345
AsuHPI GGTGA 3 cut(s) 22, 154, 223
AvaII GGWCC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 83
BanII GRGCYC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 167, 222
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 2 cut(s) 113, 330
BcnI CCSGG 1 cut(s) 345
BcoDI GTCTC 2 cut(s) 292, 445
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 2 cut(s) 6, 447
BisI GCNGC 2 cut(s) 156, 236
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 2 cut(s) 157, 237
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 3 cut(s) 113, 330, 345
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 85
BmrFI CCNGG 3 cut(s) 113, 330, 345
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 411
BmuI ACTGGG 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 112, 329
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 268
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 2 cut(s) 113, 330
BseDI CCNNGG 2 cut(s) 112, 329
BseGI GGATG 2 cut(s) 73, 369
BseLI CCNNNNNNNGG 2 cut(s) 64, 268
BseMII CTCAG 4 cut(s) 14, 186, 210, 303
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 167, 222
BshNI GGYRCC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 2 cut(s) 64, 268
BsmAI GTCTC 2 cut(s) 292, 445
Bso31I GGTCTC 1 cut(s) 445
Bsp1286I GDGCHC 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 2 cut(s) 333, 431
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 3 cut(s) 65, 81, 341
BspCNI CTCAG 4 cut(s) 15, 185, 209, 302
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 85
BspPI GGATC 2 cut(s) 341, 439
BspT107I GGYRCC 1 cut(s) 83
BspTNI GGTCTC 1 cut(s) 445
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 112, 329
BssMI GATC 2 cut(s) 333, 431
Bst2UI CCWGG 2 cut(s) 113, 330
Bst4CI ACNGT 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 295
BstDEI CTNAG 5 cut(s) 23, 172, 196, 289, 359
BstENI CCTNNNNNAGG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 73, 369
BstKTI GATC 2 cut(s) 336, 434
BstMAI GTCTC 2 cut(s) 292, 445
BstMBI GATC 2 cut(s) 333, 431
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 2 cut(s) 113, 330
BstSCI CCNGG 3 cut(s) 111, 328, 343
BstV1I GCAGC 2 cut(s) 167, 222
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BtsCI GGATG 2 cut(s) 73, 369
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 295
CciI TCATGA 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 3 cut(s) 76, 242, 305
CviAII CATG 1 cut(s) 257
CviJI RGCY 7 cut(s) 27, 158, 176, 191, 235, 274, 348
CviKI_1 RGCY 7 cut(s) 27, 158, 176, 191, 235, 274, 348
CviQI GTAC 3 cut(s) 76, 242, 305
DdeI CTNAG 5 cut(s) 23, 172, 196, 289, 359
DpnI GATC 2 cut(s) 335, 433
DpnII GATC 2 cut(s) 333, 431
EciI GGCGGA 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 350
Eco31I GGTCTC 1 cut(s) 445
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoRII CCWGG 2 cut(s) 111, 328
EcoRV GATATC 1 cut(s) 126
EcoT38I GRGCYC 1 cut(s) 350
FaeI CATG 1 cut(s) 260
FaiI YATR 6 cut(s) 99, 246, 258, 315, 352, 384
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 156, 236
FokI GGATG 2 cut(s) 80, 376
FriOI GRGCYC 1 cut(s) 350
Fsp4HI GCNGC 2 cut(s) 156, 236
FspBI CTAG 2 cut(s) 6, 447
GluI GCNGC 2 cut(s) 156, 236
HapII CCGG 1 cut(s) 344
Hin1II CATG 1 cut(s) 260
HinfI GANTC 1 cut(s) 117
HpaII CCGG 1 cut(s) 344
HphI GGTGA 3 cut(s) 22, 154, 223
Hpy166II GTNNAC 2 cut(s) 223, 242
Hpy188I TCNGA 1 cut(s) 431
Hpy188III TCNNGA 2 cut(s) 121, 257
Hpy8I GTNNAC 2 cut(s) 223, 242
HpyAV CCTTC 2 cut(s) 100, 172
HpyCH4III ACNGT 1 cut(s) 51
HpyCH4V TGCA 1 cut(s) 402
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 5 cut(s) 23, 172, 196, 289, 359
Hsp92II CATG 1 cut(s) 260
Kzo9I GATC 2 cut(s) 333, 431
LmnI GCTCC 2 cut(s) 48, 271
Lsp1109I GCAGC 2 cut(s) 167, 222
LweI GCATC 1 cut(s) 411
MaeI CTAG 2 cut(s) 6, 447
MalI GATC 2 cut(s) 335, 433
MboI GATC 2 cut(s) 333, 431
MboII GAAGA 1 cut(s) 418
MfeI CAATTG 1 cut(s) 369
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 350
MluCI AATT 2 cut(s) 369, 420
MlyI GAGTC 1 cut(s) 126
MnlI CCTC 4 cut(s) 43, 140, 262, 367
MseI TTAA 1 cut(s) 72
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 3 cut(s) 113, 330, 345
MunI CAATTG 1 cut(s) 369
MvaI CCWGG 2 cut(s) 113, 330
MwoI GCNNNNNNNGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 345
NdeII GATC 2 cut(s) 333, 431
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 85
PagI TCATGA 1 cut(s) 256
PkrI GCNGC 2 cut(s) 157, 237
PleI GAGTC 1 cut(s) 125
PpsI GAGTC 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 111, 328
PspGI CCWGG 2 cut(s) 111, 328
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 431
RsaI GTAC 3 cut(s) 77, 243, 306
RsaNI GTAC 3 cut(s) 76, 242, 305
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 156, 236
Sau3AI GATC 2 cut(s) 333, 431
Sau96I GGNCC 1 cut(s) 109
ScaI AGTACT 1 cut(s) 77
SchI GAGTC 1 cut(s) 126
ScrFI CCNGG 3 cut(s) 113, 330, 345
SduI GDGCHC 1 cut(s) 350
SfaNI GCATC 1 cut(s) 411
SinI GGWCC 1 cut(s) 109
SpeI ACTAGT 1 cut(s) 5
Sse9I AATT 2 cut(s) 369, 420
SsiI CCGC 3 cut(s) 65, 81, 341
SspMI CTAG 2 cut(s) 6, 447
StyD4I CCNGG 3 cut(s) 111, 328, 343
TaaI ACNGT 1 cut(s) 51
TasI AATT 2 cut(s) 369, 420
TatI WGTACW 3 cut(s) 75, 241, 304
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 144
TseI GCWGC 2 cut(s) 155, 235
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 109
XagI CCTNNNNNAGG 1 cut(s) 266
XspI CTAG 2 cut(s) 6, 447
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.