pycom03g11180
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0015418
Physical Location & Seq
Forward (+)
10833185 .. 10836502
3318 bp
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UTR
Exon/CDS
Intron
pycom03g11180.2

Sequence Viewer

Length: 459 bp
ATGGCGGTGCTTGCCCACTCGATTGTGATTTGCTTCGCCTTCTACCTCCTCCTACCACTCACTCAGTCTACTGATGTCAAATATTGCAGCCAGAAAGATGAGTACCCTGTGAAGGTCCAGGGAGTCAAAATATTGCCTGACCCAGTGGTGAGAGGCAAGCCAGTTACCTTTAGCATCTCTGCCACAACAGGTCAAACAATTTCCAGTGGGAAAGTGGTGATCGAGGTTTACTATTTTGGGATACGTGTGCATGCAGAAACCCAGAATTTTTGTGAAAAGTTATCCTGCCCGGTTTCAGCAGGCAACTTTCTGCTTTCTCACACCCAAACCTTACCTGGGATCACTCCGCCTGGATCTTACAATCTGAAGATGACAATCAAGGATGATAAAAACAAGGAGTTGTCTTGCATCAGTTTCAACTTCAAAATTGTCTTGCGGTCGCTGGTGTCTGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

153

Amino Acids

16.68

Weight (kDa)

8.98

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 68
AciI CCGC 3 cut(s) 5, 347, 436
AclWI GGATC 2 cut(s) 347, 361
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 386
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 112, 336
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 2 cut(s) 418, 424
AjnI CCWGG 3 cut(s) 117, 334, 349
AlwI GGATC 2 cut(s) 347, 361
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 1 cut(s) 265
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 160, 229
AvaII GGWCC 1 cut(s) 115
BbvI GCAGC 1 cut(s) 99
BciT130I CCWGG 3 cut(s) 119, 336, 351
BciVI GTATCC 1 cut(s) 234
BcnI CCSGG 1 cut(s) 290
BfaI CTAG 1 cut(s) 453
BfuI GTATCC 1 cut(s) 234
BisI GCNGC 1 cut(s) 88
BlsI GCNGC 1 cut(s) 89
Bme1390I CCNGG 4 cut(s) 119, 290, 336, 351
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmrFI CCNGG 4 cut(s) 119, 290, 336, 351
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 2 cut(s) 183, 417
BmuI ACTGGG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 290
BsaAI YACGTR 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 374
BsaJI CCNNGG 2 cut(s) 118, 335
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 336
Bse1I ACTGG 3 cut(s) 143, 161, 204
Bse8I GATNNNNATC 1 cut(s) 374
BseBI CCWGG 3 cut(s) 119, 336, 351
BseDI CCNNGG 2 cut(s) 118, 335
BseGI GGATG 1 cut(s) 388
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 2 cut(s) 112, 336
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 3 cut(s) 143, 161, 204
BseRI GAGGAG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 440
BsiEI CGRYCG 1 cut(s) 440
BsiSI CCGG 1 cut(s) 290
BslI CCNNNNNNNGG 2 cut(s) 112, 336
Bsp143I GATC 3 cut(s) 219, 339, 353
BspACI CCGC 3 cut(s) 5, 347, 436
BspCNI CTCAG 1 cut(s) 76
BspPI GGATC 2 cut(s) 347, 361
BsrI ACTGG 3 cut(s) 143, 161, 204
BssECI CCNNGG 2 cut(s) 118, 335
BssMI GATC 3 cut(s) 219, 339, 353
Bst2UI CCWGG 3 cut(s) 119, 336, 351
BstBAI YACGTR 1 cut(s) 245
BstC8I GCNNGC 4 cut(s) 12, 158, 252, 301
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 388
BstKTI GATC 3 cut(s) 222, 342, 356
BstMBI GATC 3 cut(s) 219, 339, 353
BstMCI CGRYCG 1 cut(s) 440
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 119, 336, 351
BstNSI RCATGY 1 cut(s) 254
BstSCI CCNGG 4 cut(s) 117, 288, 334, 349
BstV1I GCAGC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 353
BstYI RGATCY 1 cut(s) 353
BsuI GTATCC 1 cut(s) 234
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 2 cut(s) 150, 211
Cac8I GCNNGC 4 cut(s) 12, 158, 252, 301
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 251
CviJI RGCY 2 cut(s) 90, 160
CviKI_1 RGCY 2 cut(s) 90, 160
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 63
DpnI GATC 3 cut(s) 221, 341, 355
DpnII GATC 3 cut(s) 219, 339, 353
EciI GGCGGA 1 cut(s) 336
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 386
EcoRII CCWGG 3 cut(s) 117, 334, 349
FaeI CATG 1 cut(s) 254
FaiI YATR 1 cut(s) 252
FatI CATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 88
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 88
FspBI CTAG 1 cut(s) 453
GluI GCNGC 1 cut(s) 88
HapII CCGG 1 cut(s) 290
Hin1II CATG 1 cut(s) 254
HinfI GANTC 1 cut(s) 123
HpaII CCGG 1 cut(s) 290
HphI GGTGA 2 cut(s) 160, 229
Hpy166II GTNNAC 2 cut(s) 69, 229
Hpy188I TCNGA 1 cut(s) 366
Hpy8I GTNNAC 2 cut(s) 69, 229
HpyAV CCTTC 2 cut(s) 49, 106
HpyCH4IV ACGT 1 cut(s) 244
HpyCH4V TGCA 4 cut(s) 87, 250, 254, 408
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 1 cut(s) 254
Kzo9I GATC 3 cut(s) 219, 339, 353
Lsp1109I GCAGC 1 cut(s) 99
LweI GCATC 2 cut(s) 183, 417
MaeI CTAG 1 cut(s) 453
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 1 cut(s) 163
MalI GATC 3 cut(s) 221, 341, 355
MboI GATC 3 cut(s) 219, 339, 353
MboII GAAGA 1 cut(s) 379
MflI RGATCY 1 cut(s) 353
MluCI AATT 3 cut(s) 198, 265, 426
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 4 cut(s) 56, 59, 146, 217
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 4 cut(s) 119, 290, 336, 351
MvaI CCWGG 3 cut(s) 119, 336, 351
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 290
NdeII GATC 3 cut(s) 219, 339, 353
NlaIII CATG 1 cut(s) 254
NspI RCATGY 1 cut(s) 254
PaeI GCATGC 1 cut(s) 254
PkrI GCNGC 1 cut(s) 89
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Ppu21I YACGTR 1 cut(s) 245
Psp6I CCWGG 3 cut(s) 117, 334, 349
PspGI CCWGG 3 cut(s) 117, 334, 349
PspPI GGNCC 1 cut(s) 115
PsuI RGATCY 1 cut(s) 353
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SatI GCNGC 1 cut(s) 88
Sau3AI GATC 3 cut(s) 219, 339, 353
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 4 cut(s) 119, 290, 336, 351
SetI ASST 8 cut(s) 48, 117, 170, 193, 228, 247, 332, 337
SfaNI GCATC 2 cut(s) 183, 417
SinI GGWCC 1 cut(s) 115
SphI GCATGC 1 cut(s) 254
Sse9I AATT 3 cut(s) 198, 265, 426
SsiI CCGC 3 cut(s) 5, 347, 436
SspI AATATT 2 cut(s) 83, 132
SspMI CTAG 1 cut(s) 453
StyD4I CCNGG 4 cut(s) 117, 288, 334, 349
TaiI ACGT 1 cut(s) 247
TaqI TCGA 2 cut(s) 20, 222
TasI AATT 3 cut(s) 198, 265, 426
TscAI CASTG 2 cut(s) 150, 211
TseI GCWGC 1 cut(s) 87
TspRI CASTG 2 cut(s) 150, 211
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 254
XcmI CCANNNNNNNNNTGG 2 cut(s) 211, 332
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.