Rh5BG332700
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015418
Physical Location & Seq
Forward (+)
46301805 .. 46307320
5516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG332700.1

Sequence Viewer

Length: 600 bp
ATGAACTTCCCATCCTCCAGTGGCGTATTGGCTTCTTGCTCATGTCATTGCACGACCCATCTCTATTTCCTACTCTTACTTGCGTTTCTGCTACACCCCCCGTCTGTGCTTAGAACAAGGAAACAAAGAAGGAAAAAGGCGATGACTAGTGTGCTGGTTGTGCTGAGCTTCACCTCGTTCCTGCTCCTACCGTTTTCCCACTCTGCGGATGTTAAGTACTGCGGTGCCAAAGATGACTATGCCGTGAAGGTCCAGGGAGTCAAGATATCGCCTGACCCAGTGGTGAGAGGCAAGGCAGCTACCTTCAACATCTCAGCCACAACAGGTCAAGCCATCTCAGGTGGGAAAGTGGTGATTGAAGTTTACTATTTTGGGCTGCGTGTACATACGGAAACTCATGACCTTTGTGAGGAGCTTTCCTGTCCTGTCTCAGCAGGCAACTTTGTACTCTCTCATACTCAAACTTTACCTGGGATCACTCCGCCGGCACCCTATCAGAGGAAGTTGATTGATGCGAGTCTTTTTACACCCGAAGAGTTCCAAAGGCCTCTTGCTTTTAGAACAGCAAATAGGCTAATAAAGCAAGAGTTGTGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

199

Amino Acids

21.9

Weight (kDa)

9.24

Isoelectric Point (pI)

46.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 70 - 167 2.9e-20 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 224, 487
AciI CCGC 3 cut(s) 206, 222, 482
AclWI GGATC 1 cut(s) 482
AfaI GTAC 3 cut(s) 218, 384, 447
AfiI CCNNNNNNNGG 3 cut(s) 205, 409, 498
AgsI TTSAA 2 cut(s) 307, 359
AhlI ACTAGT 1 cut(s) 146
AjnI CCWGG 2 cut(s) 252, 469
AloI GAACNNNNNNTCC 1 cut(s) 28
AluBI AGCT 3 cut(s) 168, 299, 415
AluI AGCT 3 cut(s) 168, 299, 415
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 1 cut(s) 482
AoxI GGCC 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 296, 376
AspS9I GGNCC 1 cut(s) 250
AsuHPI GGTGA 3 cut(s) 163, 295, 364
AvaII GGWCC 1 cut(s) 250
BanI GGYRCC 2 cut(s) 224, 487
BbvI GCAGC 2 cut(s) 308, 363
BccI CCATC 3 cut(s) 19, 66, 341
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 2 cut(s) 254, 471
BcoDI GTCTC 1 cut(s) 433
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 1 cut(s) 147
BisI GCNGC 2 cut(s) 297, 377
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 2 cut(s) 298, 378
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 254, 471
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 2 cut(s) 226, 489
BmrFI CCNGG 2 cut(s) 254, 471
BmrI ACTGGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 502
BmuI ACTGGG 1 cut(s) 272
Bpu1102I GCTNAGC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 253, 470
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 409, 498
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 18, 278
Bse3DI GCAATG 1 cut(s) 46
BseBI CCWGG 2 cut(s) 254, 471
BseDI CCNNGG 2 cut(s) 253, 470
BseGI GGATG 2 cut(s) 11, 214
BseLI CCNNNNNNNGG 3 cut(s) 205, 409, 498
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 4 cut(s) 155, 327, 351, 444
BseNI ACTGG 2 cut(s) 18, 278
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 2 cut(s) 308, 363
BshFI GGCC 1 cut(s) 547
BshNI GGYRCC 2 cut(s) 224, 487
BsiSI CCGG 1 cut(s) 485
BslI CCNNNNNNNGG 3 cut(s) 205, 409, 498
BsmAI GTCTC 1 cut(s) 433
BsnI GGCC 1 cut(s) 547
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 1 cut(s) 474
Bsp1720I GCTNAGC 1 cut(s) 164
BspACI CCGC 3 cut(s) 206, 222, 482
BspANI GGCC 1 cut(s) 547
BspCNI CTCAG 4 cut(s) 156, 326, 350, 443
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 226, 489
BspPI GGATC 1 cut(s) 482
BspT107I GGYRCC 2 cut(s) 224, 487
BsrDI GCAATG 1 cut(s) 46
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 2 cut(s) 18, 278
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 2 cut(s) 253, 470
BssMI GATC 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 254, 471
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 528
BstAUI TGTACA 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 436, 486
BstDEI CTNAG 5 cut(s) 110, 164, 313, 337, 430
BstENI CCTNNNNNAGG 2 cut(s) 407, 496
BstF5I GGATG 2 cut(s) 11, 214
BstKTI GATC 1 cut(s) 477
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 1 cut(s) 474
BstMWI GCNNNNNNNGC 2 cut(s) 160, 580
BstNI CCWGG 2 cut(s) 254, 471
BstSCI CCNGG 2 cut(s) 252, 469
BstV1I GCAGC 2 cut(s) 308, 363
BsuRI GGCC 1 cut(s) 547
BtgZI GCGATG 1 cut(s) 155
BtsCI GGATG 2 cut(s) 11, 214
BtsIMutI CAGTG 2 cut(s) 25, 285
Cac8I GCNNGC 2 cut(s) 436, 486
CciI TCATGA 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 3 cut(s) 217, 383, 446
CviAII CATG 2 cut(s) 42, 398
CviJI RGCY 9 cut(s) 32, 168, 299, 317, 332, 376, 415, 547, 574
CviKI_1 RGCY 9 cut(s) 32, 168, 299, 317, 332, 376, 415, 547, 574
CviQI GTAC 3 cut(s) 217, 383, 446
DdeI CTNAG 5 cut(s) 110, 164, 313, 337, 430
DpnI GATC 1 cut(s) 476
DpnII GATC 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
EciI GGCGGA 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 547
Eco32I GATATC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 250
EcoNI CCTNNNNNAGG 2 cut(s) 407, 496
EcoRII CCWGG 2 cut(s) 252, 469
EcoRV GATATC 1 cut(s) 267
FaeI CATG 2 cut(s) 45, 401
FaiI YATR 5 cut(s) 43, 240, 387, 399, 456
FatI CATG 2 cut(s) 41, 397
Fnu4HI GCNGC 2 cut(s) 297, 377
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 297, 377
FspBI CTAG 1 cut(s) 147
GluI GCNGC 2 cut(s) 297, 377
HaeIII GGCC 1 cut(s) 547
HapII CCGG 1 cut(s) 485
Hin1II CATG 2 cut(s) 45, 401
HinfI GANTC 2 cut(s) 258, 517
HpaII CCGG 1 cut(s) 485
HphI GGTGA 3 cut(s) 163, 295, 364
Hpy166II GTNNAC 2 cut(s) 364, 383
Hpy188I TCNGA 1 cut(s) 498
Hpy188III TCNNGA 2 cut(s) 262, 398
Hpy8I GTNNAC 2 cut(s) 364, 383
HpyAV CCTTC 3 cut(s) 123, 241, 313
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 580
HpyF3I CTNAG 5 cut(s) 110, 164, 313, 337, 430
Hsp92II CATG 2 cut(s) 45, 401
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
Kzo9I GATC 1 cut(s) 474
LmnI GCTCC 2 cut(s) 189, 412
Lsp1109I GCAGC 2 cut(s) 308, 363
LweI GCATC 1 cut(s) 502
MaeI CTAG 1 cut(s) 147
MalI GATC 1 cut(s) 476
MboI GATC 1 cut(s) 474
MboII GAAGA 1 cut(s) 545
MlyI GAGTC 2 cut(s) 267, 526
MnlI CCTC 6 cut(s) 25, 184, 281, 403, 492, 558
MroNI GCCGGC 1 cut(s) 484
MseI TTAA 1 cut(s) 213
MspI CCGG 1 cut(s) 485
MspR9I CCNGG 2 cut(s) 254, 471
MvaI CCWGG 2 cut(s) 254, 471
MwoI GCNNNNNNNGC 2 cut(s) 160, 580
NaeI GCCGGC 1 cut(s) 486
NdeII GATC 1 cut(s) 474
NgoMIV GCCGGC 1 cut(s) 484
NlaIII CATG 2 cut(s) 45, 401
NlaIV GGNNCC 2 cut(s) 226, 489
PagI TCATGA 1 cut(s) 397
PceI AGGCCT 1 cut(s) 547
PdiI GCCGGC 1 cut(s) 486
PkrI GCNGC 2 cut(s) 298, 378
PleI GAGTC 2 cut(s) 266, 525
PpsI GAGTC 2 cut(s) 266, 525
Psp6I CCWGG 2 cut(s) 252, 469
PspGI CCWGG 2 cut(s) 252, 469
PspN4I GGNNCC 2 cut(s) 226, 489
PspPI GGNCC 1 cut(s) 250
RsaI GTAC 3 cut(s) 218, 384, 447
RsaNI GTAC 3 cut(s) 217, 383, 446
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 2 cut(s) 297, 377
Sau3AI GATC 1 cut(s) 474
Sau96I GGNCC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 2 cut(s) 267, 526
ScrFI CCNGG 2 cut(s) 254, 471
SfaNI GCATC 1 cut(s) 502
SinI GGWCC 1 cut(s) 250
SpeI ACTAGT 1 cut(s) 146
SseBI AGGCCT 1 cut(s) 547
SsiI CCGC 3 cut(s) 206, 222, 482
SspMI CTAG 1 cut(s) 147
StuI AGGCCT 1 cut(s) 547
StyD4I CCNGG 2 cut(s) 252, 469
TaaI ACNGT 1 cut(s) 192
TatI WGTACW 3 cut(s) 216, 382, 445
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 25, 285
TseI GCWGC 2 cut(s) 296, 376
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 2 cut(s) 25, 285
VpaK11BI GGWCC 1 cut(s) 250
XagI CCTNNNNNAGG 2 cut(s) 407, 496
XcmI CCANNNNNNNNNTGG 1 cut(s) 25
XspI CTAG 1 cut(s) 147
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.