Rorug05G0242500
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015418
Physical Location & Seq
Forward (+)
25887178 .. 25887730
553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0242500.1

Sequence Viewer

Length: 357 bp
ATGAGAGAGACAGGACGAGCAAGAAGAGGAGGAAGAAGGAGAAGGGGAAGAGGAGGAAGAAGAGGCGGAGCGCGGAGAGAGACGGCGGGTCGTTCGTCGGTTTCGGGTCGAGAAAGTCCAGTGTTCGGGCTTGGGCCGAATCCGAGACTAGACCGTCAGAAAATTATTACTTGGATTCCAGTGGCGACCTTGATAATTTGGCCTTTAGATGTCTCTATAGGATGGACATTGCTCGATATAAACCTTATGCTGCTCTTTCGGATAGCTCCGGGAATTTTAAAGCTTTGTATCAGGGGAATCAGACAATTTCAACATTGGATAGAGATGCTGATGTTGATGCATTGGATGGTAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

118

Amino Acids

13.58

Weight (kDa)

12.0

Isoelectric Point (pI)

59.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 153
AccII CGCG 1 cut(s) 73
AciI CCGC 3 cut(s) 66, 73, 86
AcsI RAATTY 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 1 cut(s) 311
AhdI GACNNNNNGTC 1 cut(s) 87
AluBI AGCT 2 cut(s) 266, 283
AluI AGCT 2 cut(s) 266, 283
Alw26I GTCTC 4 cut(s) 2, 74, 139, 217
AoxI GGCC 2 cut(s) 134, 200
ApeKI GCWGC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 273
AspLEI GCGC 1 cut(s) 73
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 270
BbvI GCAGC 1 cut(s) 237
BccI CCATC 2 cut(s) 216, 340
BceAI ACGGC 1 cut(s) 99
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 4 cut(s) 2, 74, 139, 217
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 216
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
Bme1390I CCNGG 1 cut(s) 270
BmeRI GACNNNNNGTC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 315, 327
BpuMI CCSGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 2 cut(s) 119, 179
Bse3DI GCAATG 1 cut(s) 227
BseGI GGATG 2 cut(s) 227, 351
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 119, 179
BseRI GAGGAG 2 cut(s) 42, 66
BseXI GCAGC 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 136, 202
BsiSI CCGG 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 4 cut(s) 2, 74, 139, 217
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 2 cut(s) 136, 202
BspACI CCGC 3 cut(s) 66, 73, 86
BspANI GGCC 2 cut(s) 136, 202
BspFNI CGCG 1 cut(s) 73
BsrDI GCAATG 1 cut(s) 227
BsrI ACTGG 2 cut(s) 119, 179
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 3 cut(s) 19, 43, 55
BstF5I GGATG 2 cut(s) 227, 351
BstFNI CGCG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 73
BstMAI GTCTC 4 cut(s) 2, 74, 139, 217
BstSCI CCNGG 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 216
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 1 cut(s) 237
BsuRI GGCC 2 cut(s) 136, 202
BtsCI GGATG 2 cut(s) 227, 351
BtsIMutI CAGTG 2 cut(s) 126, 186
CfoI GCGC 1 cut(s) 73
Cfr13I GGNCC 1 cut(s) 134
CviJI RGCY 5 cut(s) 130, 136, 202, 266, 283
CviKI_1 RGCY 5 cut(s) 130, 136, 202, 266, 283
DraI TTTAAA 1 cut(s) 279
DrdI GACNNNNNNGTC 1 cut(s) 153
DriI GACNNNNNGTC 1 cut(s) 87
DseDI GACNNNNNNGTC 1 cut(s) 153
Eam1104I CTCTTC 3 cut(s) 19, 43, 55
Eam1105I GACNNNNNGTC 1 cut(s) 87
EarI CTCTTC 3 cut(s) 19, 43, 55
EciI GGCGGA 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 342
Esp3I CGTCTC 1 cut(s) 74
FaiI YATR 3 cut(s) 218, 239, 248
FauI CCCGC 1 cut(s) 79
Fnu4HI GCNGC 1 cut(s) 251
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 251
HaeIII GGCC 2 cut(s) 136, 202
HapII CCGG 1 cut(s) 269
HhaI GCGC 1 cut(s) 73
Hin6I GCGC 1 cut(s) 71
HinP1I GCGC 1 cut(s) 71
HindIII AAGCTT 1 cut(s) 281
HinfI GANTC 3 cut(s) 139, 175, 297
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 4 cut(s) 144, 159, 261, 302
Hpy188III TCNNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 30, 36
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 340
HspAI GCGC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 68, 271
LpnPI CCDG 4 cut(s) 132, 192, 277, 282
Lsp1109I GCAGC 1 cut(s) 237
LweI GCATC 2 cut(s) 315, 327
MaeI CTAG 1 cut(s) 149
MboII GAAGA 5 cut(s) 36, 45, 60, 69, 72
MluCI AATT 4 cut(s) 162, 195, 273, 305
MnlI CCTC 5 cut(s) 20, 23, 44, 47, 56
Mph1103I ATGCAT 1 cut(s) 342
MseI TTAA 1 cut(s) 278
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 270
MvnI CGCG 1 cut(s) 73
NciI CCSGG 1 cut(s) 270
NsiI ATGCAT 1 cut(s) 342
PfeI GAWTC 3 cut(s) 139, 175, 297
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 1 cut(s) 252
PspPI GGNCC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 251
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 270
SetI ASST 4 cut(s) 191, 246, 268, 285
SfaNI GCATC 2 cut(s) 315, 327
SfcI CTRYAG 1 cut(s) 216
Sse9I AATT 4 cut(s) 162, 195, 273, 305
SsiI CCGC 3 cut(s) 66, 73, 86
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 1 cut(s) 268
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 109, 234
TasI AATT 4 cut(s) 162, 195, 273, 305
TfiI GAWTC 3 cut(s) 139, 175, 297
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TscAI CASTG 2 cut(s) 126, 186
TseI GCWGC 1 cut(s) 250
TspRI CASTG 2 cut(s) 126, 186
XapI RAATTY 1 cut(s) 273
XspI CTAG 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.