FvH4_3g26160
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015418
Physical Location & Seq
Reverse (-)
19032410 .. 19036934
4525 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26160.t1

Sequence Viewer

Length: 465 bp
ATGACTACTACTGTACCGGTTCACTTGGTTGTGTTAAGCTTCACCTCCTTCCTGCTCCTACCAGTTTCTCACTCTGCGGATGTTAAGTATTGCGGTGCTAAAGAGGACTATGCTGTGAAGGTCCAGGGAGTCAAGATATTGCCTGACCCAGTGGTAAGAGGCCAGGCAGCTACCTTCAACATTTCAGCCACAACAGGTCAAGCCATCTCAGGTGGGAAAGTGGTGATTGAAGTTTACTATTTTGGGGTGCGTGTACATACGGAAACTCACGACCTTTGTGAGGAGCTTTCCTGTCCTGTCTCAGCAGGCAACTTTGTACTCTCTCATACTCAAACTTTACCTGGGATCACACCACCGGGCTCGTACAATCTTAGGATGACAATTCAGGATAATCATAACCACAAGTTGTCCTGCATCAGTTTCAACTTCAAAATTATCTTCGGATCTCTAGTCTATGCTAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

155

Amino Acids

16.67

Weight (kDa)

7.04

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 27 - 145 1.2e-27 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 77, 93
AclWI GGATC 2 cut(s) 353, 451
AfaI GTAC 4 cut(s) 15, 255, 318, 365
AfiI CCNNNNNNNGG 1 cut(s) 280
AgeI ACCGGT 1 cut(s) 16
AgsI TTSAA 4 cut(s) 178, 230, 424, 430
AjnI CCWGG 3 cut(s) 123, 162, 340
AluBI AGCT 3 cut(s) 39, 170, 286
AluI AGCT 3 cut(s) 39, 170, 286
Alw26I GTCTC 1 cut(s) 304
AlwI GGATC 2 cut(s) 353, 451
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 1 cut(s) 167
AsiGI ACCGGT 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 2 cut(s) 34, 235
AvaII GGWCC 1 cut(s) 121
BaeI ACNNNNGTAYC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 362
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 3 cut(s) 125, 164, 342
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 304
BfaI CTAG 2 cut(s) 449, 459
BisI GCNGC 1 cut(s) 168
BlsI GCNGC 1 cut(s) 169
Bme1390I CCNGG 4 cut(s) 125, 164, 342, 357
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmrFI CCNGG 4 cut(s) 125, 164, 342, 357
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 143
BpuMI CCSGG 1 cut(s) 357
BsaJI CCNNGG 2 cut(s) 124, 341
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 62, 149
BseBI CCWGG 3 cut(s) 125, 164, 342
BseDI CCNNGG 2 cut(s) 124, 341
BseGI GGATG 2 cut(s) 85, 381
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 222, 315
BseNI ACTGG 2 cut(s) 62, 149
BseRI GAGGAG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 179
BshFI GGCC 1 cut(s) 162
BshTI ACCGGT 1 cut(s) 16
BsiSI CCGG 2 cut(s) 17, 356
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 304
BsnI GGCC 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 362
Bsp1407I TGTACA 1 cut(s) 253
Bsp143I GATC 2 cut(s) 345, 443
BspACI CCGC 2 cut(s) 77, 93
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 2 cut(s) 221, 314
BspPI GGATC 2 cut(s) 353, 451
BsrFI RCCGGY 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 253
BsrI ACTGG 2 cut(s) 62, 149
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 124, 341
BssMI GATC 2 cut(s) 345, 443
Bst2UI CCWGG 3 cut(s) 125, 164, 342
Bst4CI ACNGT 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 307
BstDEI CTNAG 3 cut(s) 208, 301, 371
BstENI CCTNNNNNAGG 1 cut(s) 278
BstF5I GGATG 2 cut(s) 85, 381
BstKTI GATC 2 cut(s) 348, 446
BstMAI GTCTC 1 cut(s) 304
BstMBI GATC 2 cut(s) 345, 443
BstNI CCWGG 3 cut(s) 125, 164, 342
BstSCI CCNGG 4 cut(s) 123, 162, 340, 355
BstV1I GCAGC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BsuRI GGCC 1 cut(s) 162
BtsCI GGATG 2 cut(s) 85, 381
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 307
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 4 cut(s) 14, 254, 317, 364
CspAI ACCGGT 1 cut(s) 16
CviJI RGCY 7 cut(s) 39, 162, 170, 188, 203, 286, 360
CviKI_1 RGCY 7 cut(s) 39, 162, 170, 188, 203, 286, 360
CviQI GTAC 4 cut(s) 14, 254, 317, 364
DdeI CTNAG 3 cut(s) 208, 301, 371
DpnI GATC 2 cut(s) 347, 445
DpnII GATC 2 cut(s) 345, 443
Eco24I GRGCYC 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 121
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoRII CCWGG 3 cut(s) 123, 162, 340
EcoT38I GRGCYC 1 cut(s) 362
FaiI YATR 5 cut(s) 111, 258, 327, 396, 456
Fnu4HI GCNGC 1 cut(s) 168
FokI GGATG 2 cut(s) 92, 388
FriOI GRGCYC 1 cut(s) 362
Fsp4HI GCNGC 1 cut(s) 168
FspBI CTAG 2 cut(s) 449, 459
GluI GCNGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 162
HapII CCGG 2 cut(s) 17, 356
HindIII AAGCTT 1 cut(s) 37
HinfI GANTC 1 cut(s) 129
HpaII CCGG 2 cut(s) 17, 356
HphI GGTGA 2 cut(s) 34, 235
Hpy166II GTNNAC 3 cut(s) 22, 235, 254
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 3 cut(s) 133, 269, 386
Hpy8I GTNNAC 3 cut(s) 22, 235, 254
HpyAV CCTTC 3 cut(s) 58, 112, 184
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 414
HpyF3I CTNAG 3 cut(s) 208, 301, 371
Kzo9I GATC 2 cut(s) 345, 443
LmnI GCTCC 2 cut(s) 60, 283
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 423
MaeI CTAG 2 cut(s) 449, 459
MalI GATC 2 cut(s) 347, 445
MboI GATC 2 cut(s) 345, 443
MboII GAAGA 1 cut(s) 430
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 362
MluCI AATT 2 cut(s) 381, 432
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 4 cut(s) 55, 97, 152, 274
MseI TTAA 2 cut(s) 35, 84
MspI CCGG 2 cut(s) 17, 356
MspR9I CCNGG 4 cut(s) 125, 164, 342, 357
MvaI CCWGG 3 cut(s) 125, 164, 342
NciI CCSGG 1 cut(s) 357
NdeII GATC 2 cut(s) 345, 443
PinAI ACCGGT 1 cut(s) 16
PkrI GCNGC 1 cut(s) 169
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 3 cut(s) 123, 162, 340
PspGI CCWGG 3 cut(s) 123, 162, 340
PspPI GGNCC 1 cut(s) 121
PsuI RGATCY 1 cut(s) 443
RsaI GTAC 4 cut(s) 15, 255, 318, 365
RsaNI GTAC 4 cut(s) 14, 254, 317, 364
SaqAI TTAA 2 cut(s) 35, 84
SatI GCNGC 1 cut(s) 168
Sau3AI GATC 2 cut(s) 345, 443
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 4 cut(s) 125, 164, 342, 357
SduI GDGCHC 1 cut(s) 362
SfaNI GCATC 1 cut(s) 423
SinI GGWCC 1 cut(s) 121
Sse9I AATT 2 cut(s) 381, 432
SsiI CCGC 2 cut(s) 77, 93
SspMI CTAG 2 cut(s) 449, 459
StyD4I CCNGG 4 cut(s) 123, 162, 340, 355
TaaI ACNGT 1 cut(s) 13
TasI AATT 2 cut(s) 381, 432
TatI WGTACW 2 cut(s) 253, 316
Tru1I TTAA 2 cut(s) 35, 84
Tru9I TTAA 2 cut(s) 35, 84
TscAI CASTG 1 cut(s) 156
TseI GCWGC 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 1 cut(s) 156
VpaK11BI GGWCC 1 cut(s) 121
XagI CCTNNNNNAGG 1 cut(s) 278
XspI CTAG 2 cut(s) 449, 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.