Rh5DG344300
ERF Family

Phosphatidylglycerol phosphatidylinositol transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0015418
Physical Location & Seq
Forward (+)
47066939 .. 47072129
5191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG344300.1

Sequence Viewer

Length: 459 bp
ATGACTAGTGTGCTGGTTGTGCTGAGCTTCACCTCGTTCCTGCTCCTACCGTTTTCCCACTCTGCGGATGTTAAGTACTGCGGTGCCAAAGATGACTATGCCGTGAAGGTCCAGGGAGTCAAGATATCGCCTGACCCAGTGGTGAGAGGCAAGGCAGCTACCTTCAACATCTCAGCCACAACAGGTCAAGCCATCTCAGGTGGGAAAGTGGTGATTGAAGTTTACTATTTTGGGCTGCGTGTACATACGGAAACTCATGACCTTTGTGAGGAGCTTTCCTGTCCTGTCTCAGCAGGCAACTTTGTACTCTCTCATACTCAAACTTTACCTGGGATCACTCCGCCGGCACCCTATCAGAGGAAGTTGATTGATGCGAGTCTTTTTACACCCGAAGAGTTCCAAAGGCCTCTTGCTTTTAGAACAGCAAATAGGCTAATAAAGCAAGAGTTGTGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
E1_DerP2_DerF2

Protein Analysis

152

Amino Acids

16.59

Weight (kDa)

7.69

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E1_DerP2_DerF2 PF02221 23 - 120 1.4e-20 ML domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015418)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44100
fragaria_vesca FvH4_3g26160
malus_domestica MD03G1159400.v1.1
prunus_persica Prupe.6G147100_v2.0.a1 Prupe.7G023800_v2.0.a1
pyrus_communis pycom03g11180
rosa_chinensis RchiOBHm_Chr5g0049041
rosa_laevigata RLG00000034586
rosa_roxburghii Rroxscaffold_1G00032830
rosa_rugosa Rorug05G0242500 Rorug05G0242600 Rorug05G0242700
rosa_samantha Rh5BG332700 Rh5CG357800 Rh5DG344300
rosa_wichuraiana Rw5G030420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 83, 346
AciI CCGC 3 cut(s) 65, 81, 341
AclWI GGATC 1 cut(s) 341
AfaI GTAC 3 cut(s) 77, 243, 306
AfiI CCNNNNNNNGG 3 cut(s) 64, 268, 357
AgsI TTSAA 2 cut(s) 166, 218
AhlI ACTAGT 1 cut(s) 5
AjnI CCWGG 2 cut(s) 111, 328
AluBI AGCT 3 cut(s) 27, 158, 274
AluI AGCT 3 cut(s) 27, 158, 274
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 1 cut(s) 341
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 2 cut(s) 155, 235
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 3 cut(s) 22, 154, 223
AvaII GGWCC 1 cut(s) 109
BanI GGYRCC 2 cut(s) 83, 346
BbvI GCAGC 2 cut(s) 167, 222
BccI CCATC 1 cut(s) 200
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 2 cut(s) 113, 330
BcoDI GTCTC 1 cut(s) 292
BcuI ACTAGT 1 cut(s) 5
BfaI CTAG 1 cut(s) 6
BisI GCNGC 2 cut(s) 156, 236
BlpI GCTNAGC 1 cut(s) 23
BlsI GCNGC 2 cut(s) 157, 237
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 113, 330
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 2 cut(s) 85, 348
BmrFI CCNGG 2 cut(s) 113, 330
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 112, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 268, 357
Bse118I RCCGGY 1 cut(s) 343
Bse1I ACTGG 1 cut(s) 137
BseBI CCWGG 2 cut(s) 113, 330
BseDI CCNNGG 2 cut(s) 112, 329
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 3 cut(s) 64, 268, 357
BseMII CTCAG 4 cut(s) 14, 186, 210, 303
BseNI ACTGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 284
BseXI GCAGC 2 cut(s) 167, 222
BshFI GGCC 1 cut(s) 406
BshNI GGYRCC 2 cut(s) 83, 346
BsiSI CCGG 1 cut(s) 344
BslI CCNNNNNNNGG 3 cut(s) 64, 268, 357
BsmAI GTCTC 1 cut(s) 292
BsnI GGCC 1 cut(s) 406
Bsp1407I TGTACA 1 cut(s) 241
Bsp143I GATC 1 cut(s) 333
Bsp1720I GCTNAGC 1 cut(s) 23
BspACI CCGC 3 cut(s) 65, 81, 341
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 4 cut(s) 15, 185, 209, 302
BspHI TCATGA 1 cut(s) 256
BspLI GGNNCC 2 cut(s) 85, 348
BspPI GGATC 1 cut(s) 341
BspT107I GGYRCC 2 cut(s) 83, 346
BsrFI RCCGGY 1 cut(s) 343
BsrGI TGTACA 1 cut(s) 241
BsrI ACTGG 1 cut(s) 137
BssAI RCCGGY 1 cut(s) 343
BssECI CCNNGG 2 cut(s) 112, 329
BssMI GATC 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 113, 330
Bst4CI ACNGT 1 cut(s) 51
Bst6I CTCTTC 1 cut(s) 387
BstAUI TGTACA 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 295, 345
BstDEI CTNAG 4 cut(s) 23, 172, 196, 289
BstENI CCTNNNNNAGG 2 cut(s) 266, 355
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 1 cut(s) 336
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 2 cut(s) 19, 439
BstNI CCWGG 2 cut(s) 113, 330
BstSCI CCNGG 2 cut(s) 111, 328
BstV1I GCAGC 2 cut(s) 167, 222
BsuRI GGCC 1 cut(s) 406
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 2 cut(s) 295, 345
CciI TCATGA 1 cut(s) 256
Cfr10I RCCGGY 1 cut(s) 343
Cfr13I GGNCC 1 cut(s) 109
Csp6I GTAC 3 cut(s) 76, 242, 305
CviAII CATG 1 cut(s) 257
CviJI RGCY 8 cut(s) 27, 158, 176, 191, 235, 274, 406, 433
CviKI_1 RGCY 8 cut(s) 27, 158, 176, 191, 235, 274, 406, 433
CviQI GTAC 3 cut(s) 76, 242, 305
DdeI CTNAG 4 cut(s) 23, 172, 196, 289
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
EciI GGCGGA 1 cut(s) 330
Eco147I AGGCCT 1 cut(s) 406
Eco32I GATATC 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 109
EcoNI CCTNNNNNAGG 2 cut(s) 266, 355
EcoRII CCWGG 2 cut(s) 111, 328
EcoRV GATATC 1 cut(s) 126
FaeI CATG 1 cut(s) 260
FaiI YATR 4 cut(s) 99, 246, 258, 315
FatI CATG 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 156, 236
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 156, 236
FspBI CTAG 1 cut(s) 6
GluI GCNGC 2 cut(s) 156, 236
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 344
Hin1II CATG 1 cut(s) 260
HinfI GANTC 2 cut(s) 117, 376
HpaII CCGG 1 cut(s) 344
HphI GGTGA 3 cut(s) 22, 154, 223
Hpy166II GTNNAC 2 cut(s) 223, 242
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 2 cut(s) 121, 257
Hpy8I GTNNAC 2 cut(s) 223, 242
HpyAV CCTTC 2 cut(s) 100, 172
HpyCH4III ACNGT 1 cut(s) 51
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 439
HpyF3I CTNAG 4 cut(s) 23, 172, 196, 289
Hsp92II CATG 1 cut(s) 260
KroI GCCGGC 1 cut(s) 343
KroNI GCCGGC 1 cut(s) 345
Kzo9I GATC 1 cut(s) 333
LmnI GCTCC 2 cut(s) 48, 271
Lsp1109I GCAGC 2 cut(s) 167, 222
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 6
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 1 cut(s) 404
MlyI GAGTC 2 cut(s) 126, 385
MnlI CCTC 5 cut(s) 43, 140, 262, 351, 417
MroNI GCCGGC 1 cut(s) 343
MseI TTAA 1 cut(s) 72
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 2 cut(s) 113, 330
MvaI CCWGG 2 cut(s) 113, 330
MwoI GCNNNNNNNGC 2 cut(s) 19, 439
NaeI GCCGGC 1 cut(s) 345
NdeII GATC 1 cut(s) 333
NgoMIV GCCGGC 1 cut(s) 343
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 2 cut(s) 85, 348
PagI TCATGA 1 cut(s) 256
PceI AGGCCT 1 cut(s) 406
PdiI GCCGGC 1 cut(s) 345
PkrI GCNGC 2 cut(s) 157, 237
PleI GAGTC 2 cut(s) 125, 384
PpsI GAGTC 2 cut(s) 125, 384
Psp6I CCWGG 2 cut(s) 111, 328
PspGI CCWGG 2 cut(s) 111, 328
PspN4I GGNNCC 2 cut(s) 85, 348
PspPI GGNCC 1 cut(s) 109
RsaI GTAC 3 cut(s) 77, 243, 306
RsaNI GTAC 3 cut(s) 76, 242, 305
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 156, 236
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 109
ScaI AGTACT 1 cut(s) 77
SchI GAGTC 2 cut(s) 126, 385
ScrFI CCNGG 2 cut(s) 113, 330
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 1 cut(s) 109
SpeI ACTAGT 1 cut(s) 5
SseBI AGGCCT 1 cut(s) 406
SsiI CCGC 3 cut(s) 65, 81, 341
SspMI CTAG 1 cut(s) 6
StuI AGGCCT 1 cut(s) 406
StyD4I CCNGG 2 cut(s) 111, 328
TaaI ACNGT 1 cut(s) 51
TatI WGTACW 3 cut(s) 75, 241, 304
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 1 cut(s) 144
TseI GCWGC 2 cut(s) 155, 235
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 144
VpaK11BI GGWCC 1 cut(s) 109
XagI CCTNNNNNAGG 2 cut(s) 266, 355
XspI CTAG 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.