AT3G44280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0003335
Physical Location & Seq
Reverse (-)
15968515 .. 15971200
2686 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44280.2

Sequence Viewer

Length: 327 bp
ATGTCGAAACCGGTCCTGCTCGTGTGTCTACTAGTTATACTTATAGTTACCTCTCAGTTTGAATGGAGGCAACCACTTGTTGAGTTAGATACAGCCACTAGCTCGTCTCAGAAACAGCAGCAAATTTCAGATAGGGAAGAAGCTGTCAAAGAGAAGATCATTATATCACAAGAGAGACATATCCAGAGGCTAAATGAGCTAGTCAGGAGTCTTCAATTGCAGTTGCTGCAATGCAAGGGAGAGAATGAGACCCAAAATGCCACCAAAAGCTATCATATAAATAAACAATTCATCGAGGTCGAAAGGAAACAAATCCTGGAAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.59

Weight (kDa)

6.73

Isoelectric Point (pI)

67.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 123
AgeI ACCGGT 1 cut(s) 10
AgsI TTSAA 2 cut(s) 62, 215
AhlI ACTAGT 1 cut(s) 31
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 4 cut(s) 102, 143, 199, 270
AluI AGCT 4 cut(s) 102, 143, 199, 270
Alw26I GTCTC 3 cut(s) 111, 169, 242
AlwNI CAGNNNCTG 1 cut(s) 226
ApeKI GCWGC 2 cut(s) 118, 226
ApoI RAATTY 1 cut(s) 123
AsiGI ACCGGT 1 cut(s) 10
AspS9I GGNCC 1 cut(s) 13
AvaII GGWCC 1 cut(s) 13
BauI CACGAG 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 203
BbvI GCAGC 2 cut(s) 130, 213
BciT130I CCWGG 1 cut(s) 317
BcoDI GTCTC 3 cut(s) 111, 169, 242
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 3 cut(s) 32, 99, 200
BisI GCNGC 2 cut(s) 119, 227
BlsI GCNGC 2 cut(s) 120, 228
Bme1390I CCNGG 1 cut(s) 317
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 317
BpiI GAAGAC 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 10
Bse118I RCCGGY 1 cut(s) 10
Bse3DI GCAATG 1 cut(s) 236
BseBI CCWGG 1 cut(s) 317
BseMI GCAATG 1 cut(s) 236
BseMII CTCAG 2 cut(s) 68, 122
BseXI GCAGC 2 cut(s) 130, 213
BshTI ACCGGT 1 cut(s) 10
BsiSI CCGG 1 cut(s) 11
BsmAI GTCTC 3 cut(s) 111, 169, 242
BsmBI CGTCTC 1 cut(s) 111
Bso31I GGTCTC 1 cut(s) 242
Bsp143I GATC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 67, 121
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 10
BssAI RCCGGY 1 cut(s) 10
BssMI GATC 1 cut(s) 156
BssSI CACGAG 1 cut(s) 20
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 317
BstAPI GCANNNNNTGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 54, 108
BstKTI GATC 1 cut(s) 159
BstMAI GTCTC 3 cut(s) 111, 169, 242
BstMBI GATC 1 cut(s) 156
BstMWI GCNNNNNNNGC 2 cut(s) 196, 226
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 130, 213
BstV2I GAAGAC 1 cut(s) 203
CaiI CAGNNNCTG 1 cut(s) 226
Cfr10I RCCGGY 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 13
CspAI ACCGGT 1 cut(s) 10
CviJI RGCY 7 cut(s) 95, 102, 143, 190, 199, 270, 324
CviKI_1 RGCY 7 cut(s) 95, 102, 143, 190, 199, 270, 324
DdeI CTNAG 2 cut(s) 54, 108
DpnI GATC 1 cut(s) 158
DpnII GATC 1 cut(s) 156
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 315
Esp3I CGTCTC 1 cut(s) 111
FaiI YATR 6 cut(s) 38, 44, 164, 180, 276, 278
FblI GTMKAC 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 119, 227
Fsp4HI GCNGC 2 cut(s) 119, 227
FspBI CTAG 3 cut(s) 32, 99, 200
GluI GCNGC 2 cut(s) 119, 227
HapII CCGG 1 cut(s) 11
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 111, 130
Hpy188III TCNNGA 2 cut(s) 184, 205
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 314
HpyCH4V TGCA 3 cut(s) 220, 229, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 226
HpyF3I CTNAG 2 cut(s) 54, 108
Kzo9I GATC 1 cut(s) 156
LpnPI CCDG 5 cut(s) 24, 29, 190, 197, 302
Lsp1109I GCAGC 2 cut(s) 130, 213
MaeI CTAG 3 cut(s) 32, 99, 200
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 158
MboI GATC 1 cut(s) 156
MboII GAAGA 3 cut(s) 149, 166, 203
MfeI CAATTG 1 cut(s) 215
MluCI AATT 3 cut(s) 123, 215, 287
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 4 cut(s) 60, 61, 180, 289
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 1 cut(s) 317
MunI CAATTG 1 cut(s) 215
MvaI CCWGG 1 cut(s) 317
MwoI GCNNNNNNNGC 2 cut(s) 196, 226
NdeII GATC 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 315
PinAI ACCGGT 1 cut(s) 10
PkrI GCNGC 2 cut(s) 120, 228
PleI GAGTC 1 cut(s) 216
PpsI GAGTC 1 cut(s) 216
Psp6I CCWGG 1 cut(s) 315
PspGI CCWGG 1 cut(s) 315
PspPI GGNCC 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 226
SatI GCNGC 2 cut(s) 119, 227
Sau3AI GATC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 317
SetI ASST 6 cut(s) 53, 104, 145, 201, 272, 300
SinI GGWCC 1 cut(s) 13
SpeI ACTAGT 1 cut(s) 31
Sse9I AATT 3 cut(s) 123, 215, 287
SspMI CTAG 3 cut(s) 32, 99, 200
StyD4I CCNGG 1 cut(s) 315
TaqI TCGA 3 cut(s) 5, 294, 300
TasI AATT 3 cut(s) 123, 215, 287
TseI GCWGC 2 cut(s) 118, 226
TspDTI ATGAA 1 cut(s) 280
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 1 cut(s) 123
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 3 cut(s) 32, 99, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.