Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003335

Physical Location & Seq

Genomic Coordinates Forward (+)

14363401 .. 14366238

Gene Structure 2838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g14420.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGTCAAGACCAGTGCTGCTTGTTTTTCTGCTTCTTATTCTCATAATCACTTCTCAGTTTGAATGGAAGCAACAACTTGTGCCTGATCTTGACACAACTCCAAGCATTTCCGAAAAGCAGAATCAAAACTCGAATAGGGAAGAAGTTGTAAAAGAGAAGATCATATTATTGCAAGAAAAGAACATCCAGAGACTTAATGAGCTTGTTCGCAGTCTTCGGGAACAGTTGGTACAGTGTAGGAGCAAGAATGTGACAAAAAATCAAACTGTAAGCTTCCTAACAGAACGTGTGACGGAACTTGAACGACATCAGATGTTTGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

12.82

Weight (kDa)

6.6

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44280 AT3G44280 AT5G22280 AT5G22280 AT5G22280
fragaria_vesca	FvH4_3g25870
malus_domestica	MD03G1151200.v1.1 MD11G1171800.v1.1 MD12G1033100.v1.1 MD14G1033900.v1.1
prunus_persica	Prupe.6G138900_v2.0.a1 Prupe.6G138900_v2.0.a1 Prupe.7G099100_v2.0.a1
pyrus_communis	pycom11g14420 pycom12g03040 pycom14g02990
rosa_chinensis	RchiOBHm_Chr3g0475141 RchiOBHm_Chr5g0047201
rosa_laevigata	RLG00000034475
rosa_multiflora	Rmu_sc0002310.1_g000010 Rmu_sc0003093.1_g000027
rosa_roxburghii	Rroxscaffold_1G00034190 Rroxscaffold_6G00406530
rosa_rugosa	Rorug03G0147000 Rorug03G0147100 Rorug05G0234800 Rorug05G0234800
rosa_samantha	Rh3AG196800 Rh3BG226800 Rh3DG222300 Rh5AG313700 Rh5BG322300 Rh5CG349400 Rh5DG333300
rosa_wichuraiana	Rw3G017910 Rw5G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	231
AflIII	ACRYGT	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	62, 302
AluBI	AGCT	2 cut(s)	202, 273
AluI	AGCT	2 cut(s)	202, 273
Alw26I	GTCTC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	325
BisI	GCNGC	1 cut(s)	17
BlsI	GCNGC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	206
Bse1I	ACTGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	11
BseXI	GCAGC	1 cut(s)	3
BsmAI	GTCTC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	85, 159
BspCNI	CTCAG	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	2 cut(s)	85, 159
Bst4CI	ACNGT	3 cut(s)	225, 234, 268
BstDEI	CTNAG	1 cut(s)	54
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	2 cut(s)	88, 162
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	85, 159
BstV1I	GCAGC	1 cut(s)	3
BstV2I	GAAGAC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	18, 239
Csp6I	GTAC	1 cut(s)	230
CviJI	RGCY	2 cut(s)	202, 273
CviKI_1	RGCY	2 cut(s)	202, 273
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	2 cut(s)	87, 161
DpnII	GATC	2 cut(s)	85, 159
FaiI	YATR	2 cut(s)	44, 164
Fnu4HI	GCNGC	1 cut(s)	17
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	17
FspBI	CTAG	1 cut(s)	325
GluI	GCNGC	1 cut(s)	17
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	112, 312
Hpy188III	TCNNGA	4 cut(s)	6, 89, 187, 218
HpyCH4III	ACNGT	3 cut(s)	225, 234, 268
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	54
HpySE526I	ACGT	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	85, 159
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	3 cut(s)	24, 96, 200
Lsp1109I	GCAGC	1 cut(s)	3
MaeI	CTAG	1 cut(s)	325
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	2 cut(s)	250, 289
MalI	GATC	2 cut(s)	87, 161
MboI	GATC	2 cut(s)	85, 159
MboII	GAAGA	3 cut(s)	152, 169, 206
MseI	TTAA	1 cut(s)	195
NdeII	GATC	2 cut(s)	85, 159
NmuCI	GTSAC	2 cut(s)	250, 289
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	18
PsrI	GAACNNNNNNTAC	2 cut(s)	213, 245
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	195
SatI	GCNGC	1 cut(s)	17
Sau3AI	GATC	2 cut(s)	85, 159
SetI	ASST	3 cut(s)	204, 275, 289
SspMI	CTAG	1 cut(s)	325
TaaI	ACNGT	3 cut(s)	225, 234, 268
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	1 cut(s)	195
Tru9I	TTAA	1 cut(s)	195
TscAI	CASTG	2 cut(s)	18, 239
TseFI	GTSAC	2 cut(s)	250, 289
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	2 cut(s)	250, 289
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	2 cut(s)	18, 239
XspI	CTAG	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.