Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003335

Physical Location & Seq

Genomic Coordinates Forward (+)

3630385 .. 3644903

Gene Structure 14519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1033100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAATTTATACTTAGAACCTCAAGGATCCAACCGTATAATCCACACTTTATTACAGCATAAGCCGAAAGCCATCTGGGTTTTCTTCAAAACTTCAAGCAGTTCAATAGCAACTGAGATATGCCCTTCTTCTTCTTCAGCTCAGATCTATATCGGTGAGCGCTGCTTGACAATGTCCAGACCATGTTTGTTGGTTTGTCTGCTCCTGTTAATTGTGTTTACGTCACAGTTCGAATGGAAGAAATATGGGGATGATGATCCAAGTCCAAGTACCTCCAAGAAACACAAGTACATATCTGAAAGGGAAGAAACTGCGAAAGAAAAGATTATCCTTTCCCAAGAGAAAAGTATACAGAAACTTAATGAGCTTGTGCGGAGTCTTCGAGAACAATTGCTACAATGTAGAGGTGAAAATGAGATTGTCAATGACATTTCAGCCCCTTTGACTGAACTTCTTTCTGAGCTTGAAAGGCATCCACTTTTGGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.71

Weight (kDa)

6.11

Isoelectric Point (pI)

56.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44280 AT3G44280 AT5G22280 AT5G22280 AT5G22280
fragaria_vesca	FvH4_3g25870
malus_domestica	MD03G1151200.v1.1 MD11G1171800.v1.1 MD12G1033100.v1.1 MD14G1033900.v1.1
prunus_persica	Prupe.6G138900_v2.0.a1 Prupe.6G138900_v2.0.a1 Prupe.7G099100_v2.0.a1
pyrus_communis	pycom11g14420 pycom12g03040 pycom14g02990
rosa_chinensis	RchiOBHm_Chr3g0475141 RchiOBHm_Chr5g0047201
rosa_laevigata	RLG00000034475
rosa_multiflora	Rmu_sc0002310.1_g000010 Rmu_sc0003093.1_g000027
rosa_roxburghii	Rroxscaffold_1G00034190 Rroxscaffold_6G00406530
rosa_rugosa	Rorug03G0147000 Rorug03G0147100 Rorug05G0234800 Rorug05G0234800
rosa_samantha	Rh3AG196800 Rh3BG226800 Rh3DG222300 Rh5AG313700 Rh5BG322300 Rh5CG349400 Rh5DG333300
rosa_wichuraiana	Rw3G017910 Rw5G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	349
AciI	CCGC	1 cut(s)	373
AclWI	GGATC	3 cut(s)	21, 34, 251
AcsI	RAATTY	1 cut(s)	4
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	2 cut(s)	271, 290
AfeI	AGCGCT	1 cut(s)	161
AgsI	TTSAA	4 cut(s)	88, 96, 105, 467
AluBI	AGCT	3 cut(s)	140, 367, 463
AluI	AGCT	3 cut(s)	140, 367, 463
AlwI	GGATC	3 cut(s)	21, 34, 251
Aor51HI	AGCGCT	1 cut(s)	161
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	162
AsuHPI	GGTGA	2 cut(s)	167, 419
AsuII	TTCGAA	1 cut(s)	231
BamHI	GGATCC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	163
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	1 cut(s)	371
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	6
BsaBI	GATNNNNATC	2 cut(s)	149, 255
Bse8I	GATNNNNATC	2 cut(s)	149, 255
BseGI	GGATG	2 cut(s)	256, 472
BseJI	GATNNNNATC	2 cut(s)	149, 255
BseMII	CTCAG	3 cut(s)	105, 155, 450
BseXI	GCAGC	1 cut(s)	149
Bsp119I	TTCGAA	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	26, 144, 256
BspACI	CCGC	1 cut(s)	373
BspCNI	CTCAG	3 cut(s)	106, 154, 451
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	3 cut(s)	21, 34, 251
BspT104I	TTCGAA	1 cut(s)	231
BssMI	GATC	3 cut(s)	26, 144, 256
BssNAI	GTATAC	1 cut(s)	350
Bst1107I	GTATAC	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	35, 228
BstBI	TTCGAA	1 cut(s)	231
BstDEI	CTNAG	4 cut(s)	13, 114, 141, 459
BstF5I	GGATG	2 cut(s)	256, 472
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	3 cut(s)	29, 147, 259
BstMBI	GATC	3 cut(s)	26, 144, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	371
BstX2I	RGATCY	2 cut(s)	26, 144
BstYI	RGATCY	2 cut(s)	26, 144
BstZ17I	GTATAC	1 cut(s)	350
BtsCI	GGATG	2 cut(s)	256, 472
CfoI	GCGC	1 cut(s)	162
Csp6I	GTAC	2 cut(s)	270, 289
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	6 cut(s)	64, 71, 140, 367, 437, 463
CviKI_1	RGCY	6 cut(s)	64, 71, 140, 367, 437, 463
CviQI	GTAC	2 cut(s)	270, 289
DdeI	CTNAG	4 cut(s)	13, 114, 141, 459
DpnI	GATC	3 cut(s)	28, 146, 258
DpnII	GATC	3 cut(s)	26, 144, 256
Eco47III	AGCGCT	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	120
FaeI	CATG	1 cut(s)	186
FaiI	YATR	9 cut(s)	10, 38, 60, 121, 150, 184, 246, 293, 350
FatI	CATG	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	349
Fnu4HI	GCNGC	1 cut(s)	163
FokI	GGATG	2 cut(s)	263, 459
Fsp4HI	GCNGC	1 cut(s)	163
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	1 cut(s)	163
HaeII	RGCGCY	1 cut(s)	163
HhaI	GCGC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	2 cut(s)	167, 419
Hpy166II	GTNNAC	2 cut(s)	219, 350
Hpy188I	TCNGA	3 cut(s)	144, 298, 460
Hpy188III	TCNNGA	2 cut(s)	177, 383
Hpy8I	GTNNAC	2 cut(s)	219, 350
HpyAV	CCTTC	1 cut(s)	135
HpyCH4III	ACNGT	2 cut(s)	35, 228
HpyCH4IV	ACGT	1 cut(s)	221
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	4 cut(s)	13, 114, 141, 459
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	1 cut(s)	186
HspAI	GCGC	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	26, 144, 256
LmnI	GCTCC	1 cut(s)	207
LpnPI	CCDG	3 cut(s)	61, 190, 218
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	481
MaeII	ACGT	1 cut(s)	221
MaeIII	GTNAC	1 cut(s)	222
MalI	GATC	3 cut(s)	28, 146, 258
MboI	GATC	3 cut(s)	26, 144, 256
MboII	GAAGA	7 cut(s)	76, 120, 123, 126, 250, 317, 371
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	2 cut(s)	26, 144
MluCI	AATT	3 cut(s)	4, 210, 389
MlyI	GAGTC	1 cut(s)	385
MmeI	TCCRAC	1 cut(s)	54
MnlI	CCTC	4 cut(s)	30, 283, 398, 478
MseI	TTAA	2 cut(s)	209, 360
MunI	CAATTG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	469
NdeII	GATC	3 cut(s)	26, 144, 256
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	222
NspV	TTCGAA	1 cut(s)	231
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	28
PsrI	GAACNNNNNNTAC	2 cut(s)	378, 410
PsuI	RGATCY	2 cut(s)	26, 144
PsyI	GACNNNGTC	1 cut(s)	172
RsaI	GTAC	2 cut(s)	271, 290
RsaNI	GTAC	2 cut(s)	270, 289
SaqAI	TTAA	2 cut(s)	209, 360
SatI	GCNGC	1 cut(s)	163
Sau3AI	GATC	3 cut(s)	26, 144, 256
SchI	GAGTC	1 cut(s)	385
SetI	ASST	7 cut(s)	22, 142, 224, 275, 369, 409, 465
SfaNI	GCATC	1 cut(s)	481
SfuI	TTCGAA	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	21
SmoI	CTYRAG	1 cut(s)	21
Sse9I	AATT	3 cut(s)	4, 210, 389
SsiI	CCGC	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	35, 228
TaiI	ACGT	1 cut(s)	224
TaqI	TCGA	2 cut(s)	231, 382
TasI	AATT	3 cut(s)	4, 210, 389
TatI	WGTACW	1 cut(s)	288
Tru1I	TTAA	2 cut(s)	209, 360
Tru9I	TTAA	2 cut(s)	209, 360
TseFI	GTSAC	1 cut(s)	222
TseI	GCWGC	1 cut(s)	162
Tsp45I	GTSAC	1 cut(s)	222
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	4
XmiI	GTMKAC	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.