Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002310.1

Orthogroup ID

OG0003335

Physical Location & Seq

Genomic Coordinates Forward (+)

40828 .. 47091

Gene Structure 6264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002310.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgatgtcaagaccagtgttgcttgtttttctgcttcttgttctcataatcacttcccagtttgagtggaagcaacaacttgtccctgaccttgatgcaactccaagtatttcccaaaagccaagtcagagctcaaagagggaagaagctgtaaaagagaagatcatattactgcaagaaaagaacattaagagactcagtgagattgtccatagccttagggaacagttgcgacggtgtaaaagcaagaatgcgacgaggcagcatagcaggaagcatgagaagttgagaacctttggaaccctatgctacggagagagaaatttggaaaagcacccgacacaaatgcgattgaccatcacaagcatagtcacaatgctgatgaccacaattgccaacatcacactccgattagaccattattcaaagagggctagagttttggatgagagtaaaggaaggcagcgatttgaggacgatgatcagaatgcaaatttgcctcttagcgttgagatttcttgccagcaaattgttgccttcggccttcttttgcctcaccgactcggtctacctatgtctgacctgcaactcgaagatccacggtgccaacaaggtcacgtcgctccaccagtgcgtgtagatgttcaaggtcagcaagcaagctccgattctctactcgcctctggtttctctatggagtgtggcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

236

Amino Acids

26.92

Weight (kDa)

9.3

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44280 AT3G44280 AT5G22280 AT5G22280 AT5G22280
fragaria_vesca	FvH4_3g25870
malus_domestica	MD03G1151200.v1.1 MD11G1171800.v1.1 MD12G1033100.v1.1 MD14G1033900.v1.1
prunus_persica	Prupe.6G138900_v2.0.a1 Prupe.6G138900_v2.0.a1 Prupe.7G099100_v2.0.a1
pyrus_communis	pycom11g14420 pycom12g03040 pycom14g02990
rosa_chinensis	RchiOBHm_Chr3g0475141 RchiOBHm_Chr5g0047201
rosa_laevigata	RLG00000034475
rosa_multiflora	Rmu_sc0002310.1_g000010 Rmu_sc0003093.1_g000027
rosa_roxburghii	Rroxscaffold_1G00034190 Rroxscaffold_6G00406530
rosa_rugosa	Rorug03G0147000 Rorug03G0147100 Rorug05G0234800 Rorug05G0234800
rosa_samantha	Rh3AG196800 Rh3BG226800 Rh3DG222300 Rh5AG313700 Rh5BG322300 Rh5CG349400 Rh5DG333300
rosa_wichuraiana	Rw3G017910 Rw5G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	568
AclWI	GGATC	1 cut(s)	590
AcsI	RAATTY	2 cut(s)	322, 493
AgsI	TTSAA	2 cut(s)	426, 647
AjiI	CACGTC	1 cut(s)	619
AluBI	AGCT	3 cut(s)	132, 149, 663
AluI	AGCT	3 cut(s)	132, 149, 663
Alw21I	GWGCWC	1 cut(s)	134
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	590
AoxI	GGCC	1 cut(s)	541
ApeKI	GCWGC	2 cut(s)	262, 463
ApoI	RAATTY	2 cut(s)	322, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	109, 141
AsuHPI	GGTGA	1 cut(s)	548
AxyI	CCTNAGG	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	134
BbvI	GCAGC	2 cut(s)	274, 475
BccI	CCATC	1 cut(s)	365
BcgI	CGANNNNNNTGC	2 cut(s)	328, 362
BclI	TGATCA	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	1 cut(s)	435
BfuAI	ACCTGC	1 cut(s)	591
BisI	GCNGC	2 cut(s)	263, 464
BlsI	GCNGC	2 cut(s)	264, 465
BmgBI	CACGTC	1 cut(s)	619
BmiI	GGNNCC	2 cut(s)	301, 605
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	599
Bse1I	ACTGG	3 cut(s)	14, 58, 629
Bse21I	CCTNAGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	599
BseGI	GGATG	1 cut(s)	451
BseMII	CTCAG	1 cut(s)	211
BseNI	ACTGG	3 cut(s)	14, 58, 629
BseXI	GCAGC	2 cut(s)	274, 475
BshFI	GGCC	1 cut(s)	543
BshNI	GGYRCC	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	1 cut(s)	68
BsmI	GAATGC	2 cut(s)	256, 493
BsnI	GGCC	1 cut(s)	543
Bsp1286I	GDGCHC	1 cut(s)	134
Bsp143I	GATC	3 cut(s)	162, 481, 595
BspANI	GGCC	1 cut(s)	543
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	301, 605
BspMI	ACCTGC	1 cut(s)	591
BspPI	GGATC	1 cut(s)	590
BspT107I	GGYRCC	1 cut(s)	603
BsrI	ACTGG	3 cut(s)	14, 58, 629
BssECI	CCNNGG	1 cut(s)	599
BssMI	GATC	3 cut(s)	162, 481, 595
Bst4CI	ACNGT	3 cut(s)	228, 237, 603
BstC8I	GCNNGC	3 cut(s)	524, 657, 661
BstDEI	CTNAG	3 cut(s)	197, 218, 503
BstDSI	CCRYGG	1 cut(s)	599
BstF5I	GGATG	1 cut(s)	451
BstKTI	GATC	3 cut(s)	165, 484, 598
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	162, 481, 595
BstNSI	RCATGY	1 cut(s)	709
BstV1I	GCAGC	2 cut(s)	274, 475
BstX2I	RGATCY	1 cut(s)	595
BstYI	RGATCY	1 cut(s)	595
Bsu36I	CCTNAGG	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	543
BtgI	CCRYGG	1 cut(s)	599
BtrI	CACGTC	1 cut(s)	619
BtsCI	GGATG	1 cut(s)	451
BtsIMutI	CAGTG	3 cut(s)	21, 205, 636
BveI	ACCTGC	1 cut(s)	591
Cac8I	GCNNGC	3 cut(s)	524, 657, 661
CviAII	CATG	2 cut(s)	278, 706
CviJI	RGCY	7 cut(s)	121, 132, 149, 216, 434, 543, 663
CviKI_1	RGCY	7 cut(s)	121, 132, 149, 216, 434, 543, 663
DdeI	CTNAG	3 cut(s)	197, 218, 503
DpnI	GATC	3 cut(s)	164, 483, 597
DpnII	GATC	3 cut(s)	162, 481, 595
Ecl136II	GAGCTC	1 cut(s)	132
Eco24I	GRGCYC	1 cut(s)	134
Eco53kI	GAGCTC	1 cut(s)	132
Eco81I	CCTNAGG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	132
EcoT38I	GRGCYC	1 cut(s)	134
FaeI	CATG	2 cut(s)	281, 709
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	2 cut(s)	277, 705
FbaI	TGATCA	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	568
Fnu4HI	GCNGC	2 cut(s)	263, 464
FokI	GGATG	1 cut(s)	458
FriOI	GRGCYC	1 cut(s)	134
Fsp4HI	GCNGC	2 cut(s)	263, 464
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	2 cut(s)	263, 464
HaeIII	GGCC	1 cut(s)	543
Hin1II	CATG	2 cut(s)	281, 709
HinfI	GANTC	3 cut(s)	195, 561, 668
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	5 cut(s)	129, 410, 486, 580, 667
Hpy188III	TCNNGA	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	569
Hpy99I	CGWCG	3 cut(s)	237, 259, 623
HpyAV	CCTTC	3 cut(s)	453, 547, 554
HpyCH4III	ACNGT	3 cut(s)	228, 237, 603
HpyCH4IV	ACGT	1 cut(s)	618
HpyCH4V	TGCA	4 cut(s)	98, 175, 491, 586
HpyF3I	CTNAG	3 cut(s)	197, 218, 503
HpySE526I	ACGT	1 cut(s)	618
Hsp92II	CATG	2 cut(s)	281, 709
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	3 cut(s)	162, 481, 595
LmnI	GCTCC	2 cut(s)	628, 668
LpnPI	CCDG	8 cut(s)	27, 71, 99, 256, 536, 596, 642, 669
Lsp1109I	GCAGC	2 cut(s)	274, 475
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	1 cut(s)	618
MaeIII	GTNAC	2 cut(s)	370, 614
MalI	GATC	3 cut(s)	164, 483, 597
MboI	GATC	3 cut(s)	162, 481, 595
MboII	GAAGA	3 cut(s)	155, 172, 605
MfeI	CAATTG	1 cut(s)	390
MflI	RGATCY	1 cut(s)	595
MhlI	GDGCHC	1 cut(s)	134
MluCI	AATT	4 cut(s)	322, 390, 493, 528
MlyI	GAGTC	2 cut(s)	189, 555
MnlI	CCTC	7 cut(s)	132, 252, 423, 466, 510, 564, 691
MseI	TTAA	1 cut(s)	189
MunI	CAATTG	1 cut(s)	390
Mva1269I	GAATGC	2 cut(s)	256, 493
NdeII	GATC	3 cut(s)	162, 481, 595
NlaIII	CATG	2 cut(s)	281, 709
NlaIV	GGNNCC	2 cut(s)	301, 605
NmuCI	GTSAC	2 cut(s)	370, 614
NspI	RCATGY	1 cut(s)	709
PctI	GAATGC	2 cut(s)	256, 493
PfeI	GAWTC	1 cut(s)	668
PflFI	GACNNNGTC	1 cut(s)	564
PkrI	GCNGC	2 cut(s)	264, 465
PleI	GAGTC	2 cut(s)	189, 555
PpsI	GAGTC	2 cut(s)	189, 555
Psp124BI	GAGCTC	1 cut(s)	134
PspN4I	GGNNCC	2 cut(s)	301, 605
PsuI	RGATCY	1 cut(s)	595
PsyI	GACNNNGTC	1 cut(s)	564
SacI	GAGCTC	1 cut(s)	134
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	2 cut(s)	263, 464
Sau3AI	GATC	3 cut(s)	162, 481, 595
SchI	GAGTC	2 cut(s)	189, 555
SduI	GDGCHC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	85
Sse9I	AATT	4 cut(s)	322, 390, 493, 528
SspMI	CTAG	1 cut(s)	435
SstI	GAGCTC	1 cut(s)	134
TaaI	ACNGT	3 cut(s)	228, 237, 603
TaiI	ACGT	1 cut(s)	621
TaqI	TCGA	1 cut(s)	591
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	4 cut(s)	322, 390, 493, 528
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	3 cut(s)	21, 205, 636
TseFI	GTSAC	2 cut(s)	370, 614
TseI	GCWGC	2 cut(s)	262, 463
Tsp45I	GTSAC	2 cut(s)	370, 614
TspGWI	ACGGA	1 cut(s)	327
TspRI	CASTG	3 cut(s)	21, 205, 636
Tth111I	GACNNNGTC	1 cut(s)	564
XapI	RAATTY	2 cut(s)	322, 493
XceI	RCATGY	1 cut(s)	709
XmiI	GTMKAC	1 cut(s)	568
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.