Rw3G017910

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Forward (+)
19672615 .. 19674229
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017910.1

Sequence Viewer

Length: 324 bp
ATGTCAAGACCCTGGGTACTGGTTTGTCTCCTCCTGTTAATTGTGTTTACATCACAGTTAGAATGGAAGCAACAATATGGGAATGATGAGCCGAGTCCAAACCCTTCAAAGAAACAGCAATATATATCTGAAAGGGAAGAAGCTGTGAAAGAAAAGATTATACTCTCTCAAGAGAAAAATATACAGAAACTTAATGAGCTCGTGCGGAGTCTTCGAGAACAGTTACTACAATGTAGAGGTGAAAGTGAGGTTGTCAATGGCACTGCAACACCTTTGACCGAACTTCTTTCTGACCTCGAACGGCATGCACTCTTGGAGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.4

Weight (kDa)

5.08

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 205
AfaI GTAC 1 cut(s) 18
AgsI TTSAA 1 cut(s) 108
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 2 cut(s) 143, 199
AluI AGCT 2 cut(s) 143, 199
Alw21I GWGCWC 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 251
BanII GRGCYC 1 cut(s) 201
BauI CACGAG 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 201
BceAI ACGGC 1 cut(s) 317
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 203
BpuEI CTTGAG 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 11, 12
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 2 cut(s) 11, 12
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 20
BsiHKAI GWGCWC 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 201
BspACI CCGC 1 cut(s) 205
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 2 cut(s) 11, 12
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 57, 222
BstC8I GCNNGC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 11
BstV2I GAAGAC 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 17
CviAII CATG 1 cut(s) 305
CviJI RGCY 3 cut(s) 91, 143, 199
CviKI_1 RGCY 3 cut(s) 91, 143, 199
CviQI GTAC 1 cut(s) 17
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 201
Eco53kI GAGCTC 1 cut(s) 199
EcoICRI GAGCTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 201
FaeI CATG 1 cut(s) 308
FaiI YATR 6 cut(s) 78, 123, 125, 161, 182, 306
FatI CATG 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 201
Hin1II CATG 1 cut(s) 308
HinfI GANTC 2 cut(s) 94, 208
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 2 cut(s) 130, 292
Hpy188III TCNNGA 3 cut(s) 6, 170, 215
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 114
HpyCH4III ACNGT 2 cut(s) 57, 222
HpyCH4V TGCA 2 cut(s) 266, 308
Hsp92II CATG 1 cut(s) 308
LpnPI CCDG 3 cut(s) 5, 25, 47
MaeIII GTNAC 1 cut(s) 222
MboII GAAGA 2 cut(s) 149, 203
MhlI GDGCHC 1 cut(s) 201
MluCI AATT 1 cut(s) 39
MlyI GAGTC 2 cut(s) 103, 217
MnlI CCTC 5 cut(s) 41, 230, 241, 305, 310
MseI TTAA 2 cut(s) 38, 192
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
NlaIII CATG 1 cut(s) 308
NmeAIII GCCGAG 1 cut(s) 117
NspI RCATGY 1 cut(s) 308
PaeI GCATGC 1 cut(s) 308
PasI CCCWGGG 1 cut(s) 12
PleI GAGTC 2 cut(s) 102, 216
PpsI GAGTC 2 cut(s) 102, 216
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PsrI GAACNNNNNNTAC 2 cut(s) 210, 242
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 38, 192
SchI GAGTC 2 cut(s) 103, 217
ScrFI CCNGG 1 cut(s) 13
SduI GDGCHC 1 cut(s) 201
SetI ASST 6 cut(s) 145, 201, 241, 252, 274, 297
SmlI CTYRAG 1 cut(s) 168
SmoI CTYRAG 1 cut(s) 168
SphI GCATGC 1 cut(s) 308
Sse9I AATT 1 cut(s) 39
SsiI CCGC 1 cut(s) 205
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 57, 222
TaqI TCGA 2 cut(s) 214, 297
TaqII GACCGA 1 cut(s) 293
TasI AATT 1 cut(s) 39
Tru1I TTAA 2 cut(s) 38, 192
Tru9I TTAA 2 cut(s) 38, 192
TscAI CASTG 1 cut(s) 268
TspRI CASTG 1 cut(s) 268
XceI RCATGY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.