Rh5AG313700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
45343450 .. 45346362
2913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG313700.1

Sequence Viewer

Length: 330 bp
ATGATGTCAAGACCAGTGTTGCTTGTTTTTCTACTTCTTGTTCTCATAATCACTTCCCAGTTTGAGTGGAAGCAACAACTTGTCCCTGACCTTGATGCAACTCCAAGTATTTCCCAAAAGCCAAGTCAGAGCTCAAAGAGGGAAGAAGCTGTAAAAGAGAAGATCATATTATTGCAAGAAAAGAACATTAAGAGACTCAATGAGATTGTCCATAGCCTTAGGGAACAGTTGCGACGGTGTAAAAGCAAGAATGAGACAAGGCAGCACAGCGTAAGCTTCCTATCTGAACATGTTACAGAAATTGAACAACATCAGATATTCGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

12.85

Weight (kDa)

7.93

Isoelectric Point (pI)

78.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 289
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 3 cut(s) 132, 149, 276
AluI AGCT 3 cut(s) 132, 149, 276
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 187, 248
ApeKI GCWGC 1 cut(s) 262
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AxyI CCTNAGG 1 cut(s) 218
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 187, 248
BfaI CTAG 1 cut(s) 328
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 14, 58
Bse21I CCTNAGG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 14, 58
BseXI GCAGC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 134
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 187, 248
BsmFI GGGAC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 162
BsrI ACTGG 2 cut(s) 14, 58
BssMI GATC 1 cut(s) 162
Bst4CI ACNGT 2 cut(s) 228, 237
BstDEI CTNAG 1 cut(s) 218
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 2 cut(s) 187, 248
BstMBI GATC 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 274
Bsu36I CCTNAGG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 21
CviAII CATG 1 cut(s) 290
CviJI RGCY 5 cut(s) 121, 132, 149, 216, 276
CviKI_1 RGCY 5 cut(s) 121, 132, 149, 216, 276
DdeI CTNAG 1 cut(s) 218
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 132
Eco81I CCTNAGG 1 cut(s) 218
EcoICRI GAGCTC 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 134
FaeI CATG 1 cut(s) 293
FaiI YATR 4 cut(s) 47, 167, 213, 291
FaqI GGGAC 1 cut(s) 68
FatI CATG 1 cut(s) 289
Fnu4HI GCNGC 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 1 cut(s) 328
GluI GCNGC 1 cut(s) 263
Hin1II CATG 1 cut(s) 293
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 1 cut(s) 195
Hpy188I TCNGA 3 cut(s) 129, 286, 315
Hpy188III TCNNGA 1 cut(s) 9
Hpy99I CGWCG 1 cut(s) 237
HpyCH4III ACNGT 2 cut(s) 228, 237
HpyCH4V TGCA 2 cut(s) 98, 175
HpyF3I CTNAG 1 cut(s) 218
Hsp92II CATG 1 cut(s) 293
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 3 cut(s) 27, 71, 99
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 328
MaeIII GTNAC 1 cut(s) 292
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 2 cut(s) 155, 172
MhlI GDGCHC 1 cut(s) 134
MluCI AATT 1 cut(s) 300
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 2 cut(s) 132, 316
MseI TTAA 1 cut(s) 189
NdeII GATC 1 cut(s) 162
NlaIII CATG 1 cut(s) 293
NspI RCATGY 1 cut(s) 293
PciI ACATGT 1 cut(s) 289
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PscI ACATGT 1 cut(s) 289
Psp124BI GAGCTC 1 cut(s) 134
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 189
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 162
SchI GAGTC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 134
SetI ASST 4 cut(s) 93, 134, 151, 278
SfaNI GCATC 1 cut(s) 85
Sse9I AATT 1 cut(s) 300
SspMI CTAG 1 cut(s) 328
SstI GAGCTC 1 cut(s) 134
TaaI ACNGT 2 cut(s) 228, 237
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 300
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TscAI CASTG 1 cut(s) 21
TseI GCWGC 1 cut(s) 262
TspRI CASTG 1 cut(s) 21
XceI RCATGY 1 cut(s) 293
XspI CTAG 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.