FvH4_3g25870

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
18712271 .. 18716314
4044 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25870.t1

Sequence Viewer

Length: 330 bp
ATGATGTCAAGACCGGTGTTGCTAGTTTTTCTTCTAGTTGTTCTCATAATCACTTCCCAGTTTGAGTGGAAGCAACAACTTGTCCCTGACCTTGATGCAACTCCAAGTATCTCGCAAAAGCCAAGTGAGAGCTCAAAGAGGGAAGAAGCTGTAAAAGAGAAGATCATATTATTGCAAGAAAAGAACATTAAGAGACTCAATGAGGTTGTCAGTAGCCTGCGGGAACAGTTGCAACGATGTAAAAGCAAGAATGAGACAAGGCAGCACACTTTAAGTTTCCTAACCGAACGTGATACAGATATTGAAAGGAATCAGATATTCGAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.81

Weight (kDa)

6.61

Isoelectric Point (pI)

67.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 220
AgeI ACCGGT 1 cut(s) 13
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 2 cut(s) 132, 149
AluI AGCT 2 cut(s) 132, 149
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 187, 248
ApeKI GCWGC 1 cut(s) 262
AsiGI ACCGGT 1 cut(s) 13
BanII GRGCYC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 187, 248
BfaI CTAG 3 cut(s) 23, 35, 328
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 52
BmsI GCATC 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 52
BsaWI WCCGGW 1 cut(s) 13
Bse118I RCCGGY 1 cut(s) 13
Bse1I ACTGG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 274
BshTI ACCGGT 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 134
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 187, 248
BsmFI GGGAC 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 162
BspACI CCGC 1 cut(s) 220
BsrFI RCCGGY 1 cut(s) 13
BsrI ACTGG 1 cut(s) 58
BssAI RCCGGY 1 cut(s) 13
BssMI GATC 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 2 cut(s) 187, 248
BstMBI GATC 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 218
Cfr10I RCCGGY 1 cut(s) 13
CspAI ACCGGT 1 cut(s) 13
CviJI RGCY 4 cut(s) 121, 132, 149, 216
CviKI_1 RGCY 4 cut(s) 121, 132, 149, 216
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 1 cut(s) 134
Eco53kI GAGCTC 1 cut(s) 132
EcoICRI GAGCTC 1 cut(s) 132
EcoT38I GRGCYC 1 cut(s) 134
FaiI YATR 2 cut(s) 47, 167
FaqI GGGAC 1 cut(s) 68
FauI CCCGC 1 cut(s) 213
Fnu4HI GCNGC 1 cut(s) 263
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 263
FspBI CTAG 3 cut(s) 23, 35, 328
GluI GCNGC 1 cut(s) 263
HapII CCGG 1 cut(s) 14
HinfI GANTC 2 cut(s) 195, 310
HpaII CCGG 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 1 cut(s) 9
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 98, 175, 232
HpySE526I ACGT 1 cut(s) 289
Kzo9I GATC 1 cut(s) 162
LpnPI CCDG 4 cut(s) 27, 71, 99, 230
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 1 cut(s) 85
MaeI CTAG 3 cut(s) 23, 35, 328
MaeII ACGT 1 cut(s) 289
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 3 cut(s) 23, 155, 172
MhlI GDGCHC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 189
MnlI CCTC 3 cut(s) 132, 196, 316
MseI TTAA 2 cut(s) 189, 272
MspI CCGG 1 cut(s) 14
NdeII GATC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 310
PinAI ACCGGT 1 cut(s) 13
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 134
SacI GAGCTC 1 cut(s) 134
SaqAI TTAA 2 cut(s) 189, 272
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 162
SchI GAGTC 1 cut(s) 189
SduI GDGCHC 1 cut(s) 134
SetI ASST 5 cut(s) 93, 134, 151, 207, 292
SfaNI GCATC 1 cut(s) 85
SsiI CCGC 1 cut(s) 220
SspMI CTAG 3 cut(s) 23, 35, 328
SstI GAGCTC 1 cut(s) 134
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 321
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 189, 272
Tru9I TTAA 2 cut(s) 189, 272
TseI GCWGC 1 cut(s) 262
XspI CTAG 3 cut(s) 23, 35, 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.