AT3G44785

pre-mRNA 3'-splice site binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007614
Physical Location & Seq
Reverse (-)
16328221 .. 16328448
228 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44785.1

Sequence Viewer

Length: 228 bp
ATGGTCGAGCACTTAGCGTCAATATACGGAACGGAGAAAGATCGCGTGAATTGTCCTTTCTACTTCAAAATCGGCGTTTGTCGTAACGGAGATCGATGCTCTCGTCTCTACACCAAACCAAGTATCAGCCCAACGCTTCTCCTTTCGAATACGTATCAGCAGGGCCGGCTCAAACAATTTCTGGACCCAGTACAATCACGAGAGAAGGACCCTAAAAAAAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000243 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009889 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010810 GO:0010811 GO:0015030 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0030155 GO:0030628 GO:0031123 GO:0031124 GO:0031323 GO:0031326 GO:0031503 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0036002 GO:0042710 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043900 GO:0043902 GO:0044010 GO:0044011 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044764 GO:0045184 GO:0045292 GO:0045785 GO:0046483 GO:0046907 GO:0048024 GO:0048518 GO:0048522 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050657 GO:0050658 GO:0050684 GO:0050733 GO:0050789 GO:0050794 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051641 GO:0051649 GO:0051703 GO:0051704 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071004 GO:0071010 GO:0071013 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0089701 GO:0090304 GO:0090605 GO:0090609 GO:0097159 GO:1900187 GO:1900189 GO:1900190 GO:1900192 GO:1901360 GO:1901363 GO:1902494 GO:1903311 GO:1903506 GO:1990904 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03040 ko05131 map03040 map05131
Pfam Domains
Protein Families
RRM_1 zf-CCCH

Protein Analysis

75

Amino Acids

8.74

Weight (kDa)

9.62

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 14 - 35 1.4e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 45
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 192
AgsI TTSAA 1 cut(s) 67
Alw21I GWGCWC 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 1 cut(s) 163
ApoI RAATTY 1 cut(s) 221
AspS9I GGNCC 3 cut(s) 163, 184, 208
AsuII TTCGAA 1 cut(s) 146
AvaII GGWCC 2 cut(s) 184, 208
BauI CACGAG 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 110
Bme18I GGWCC 2 cut(s) 184, 208
BmgT120I GGNCC 3 cut(s) 163, 184, 208
BmiI GGNNCC 2 cut(s) 186, 210
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 86
BmuI ACTGGG 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 146
Bsa29I ATCGAT 1 cut(s) 94
BsaAI YACGTR 1 cut(s) 153
Bse118I RCCGGY 1 cut(s) 165
Bse1I ACTGG 1 cut(s) 188
BseCI ATCGAT 1 cut(s) 94
BseNI ACTGG 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 45
BshFI GGCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 110
BsmBI CGTCTC 1 cut(s) 110
BsnI GGCC 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 2 cut(s) 40, 91
BspANI GGCC 1 cut(s) 165
BspDI ATCGAT 1 cut(s) 94
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 2 cut(s) 186, 210
BspT104I TTCGAA 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 165
BsrI ACTGG 1 cut(s) 188
BssAI RCCGGY 1 cut(s) 165
BssMI GATC 2 cut(s) 40, 91
BssSI CACGAG 1 cut(s) 198
Bst2BI CACGAG 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 146
BstC8I GCNNGC 1 cut(s) 167
BstDEI CTNAG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 45
BstKTI GATC 2 cut(s) 43, 94
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 40, 91
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstSNI TACGTA 1 cut(s) 153
BstUI CGCG 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 94
BsuRI GGCC 1 cut(s) 165
BsuTUI ATCGAT 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 165
Cfr13I GGNCC 3 cut(s) 163, 184, 208
ClaI ATCGAT 1 cut(s) 94
CseI GACGC 1 cut(s) 6
Csp6I GTAC 1 cut(s) 191
CviJI RGCY 3 cut(s) 129, 165, 169
CviKI_1 RGCY 3 cut(s) 129, 165, 169
CviQI GTAC 1 cut(s) 191
DdeI CTNAG 1 cut(s) 13
DpnI GATC 2 cut(s) 42, 93
DpnII GATC 2 cut(s) 40, 91
Eco105I TACGTA 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 184, 208
EcoO109I RGGNCCY 1 cut(s) 208
Esp3I CGTCTC 1 cut(s) 110
FaiI YATR 1 cut(s) 25
HaeIII GGCC 1 cut(s) 165
HapII CCGG 1 cut(s) 166
HgaI GACGC 1 cut(s) 6
HpaII CCGG 1 cut(s) 166
Hpy188III TCNNGA 2 cut(s) 182, 198
HpyAV CCTTC 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 152
KroI GCCGGC 1 cut(s) 165
KroNI GCCGGC 1 cut(s) 167
Kzo9I GATC 2 cut(s) 40, 91
LpnPI CCDG 4 cut(s) 146, 167, 179, 201
LweI GCATC 1 cut(s) 86
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 83
MalI GATC 2 cut(s) 42, 93
MboI GATC 2 cut(s) 40, 91
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 3 cut(s) 49, 176, 221
MroNI GCCGGC 1 cut(s) 165
MseI TTAA 1 cut(s) 226
MspI CCGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 45
MwoI GCNNNNNNNGC 1 cut(s) 166
NaeI GCCGGC 1 cut(s) 167
NdeII GATC 2 cut(s) 40, 91
NgoMIV GCCGGC 1 cut(s) 165
NlaIV GGNNCC 2 cut(s) 186, 210
NspV TTCGAA 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 167
Ppu21I YACGTR 1 cut(s) 153
PpuMI RGGWCCY 1 cut(s) 208
Psp5II RGGWCCY 1 cut(s) 208
PspN4I GGNNCC 2 cut(s) 186, 210
PspPI GGNCC 3 cut(s) 163, 184, 208
PspPPI RGGWCCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 192
RsaNI GTAC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 226
Sau3AI GATC 2 cut(s) 40, 91
Sau96I GGNCC 3 cut(s) 163, 184, 208
SduI GDGCHC 1 cut(s) 12
SetI ASST 1 cut(s) 155
SfaNI GCATC 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 146
SinI GGWCC 2 cut(s) 184, 208
SnaBI TACGTA 1 cut(s) 153
Sse9I AATT 3 cut(s) 49, 176, 221
TaiI ACGT 1 cut(s) 155
TaqI TCGA 3 cut(s) 6, 94, 146
TasI AATT 3 cut(s) 49, 176, 221
TatI WGTACW 1 cut(s) 190
Tru1I TTAA 1 cut(s) 226
Tru9I TTAA 1 cut(s) 226
TspGWI ACGGA 3 cut(s) 42, 47, 102
VpaK11BI GGWCC 2 cut(s) 184, 208
XapI RAATTY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.