Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Reverse (-)

12464262 .. 12464684

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1094300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTACCAGCGCCCCGATATGCTTACCAACCCCGGCGTCGACCCCCAGGGCCAAGCCCTCGACCCCCGCAAGATCCAGGACAACTTCGAGGATTTTTATGAGGATCTGTTCGAGGAGCTGAGCAAGTACGGACAGATCGAAAGCTTGGATATCTGTGACAATTTGGCTGACCACATGGTTGGTAATGTGTACGTTCGGTTCAGGGAGGAAGAACATGCTCAAGCTGCGCTTCAGAATTTCACTGGCAGGTTCTATGCAGGGCGTCCCATCATCGTCGACTTTTCACCCTTGACGGATTTTCGTGAAGCTACCTGTAGGCAGTACGAAGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTCATGCACTTGAAGAAAATTAGCAGGGAGTTGAGGAGGCGGTTATTTGGGAGAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

141

Amino Acids

16.54

Weight (kDa)

5.41

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	34 - 90	1.2e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AccI	GTMKAC	2 cut(s)	39, 276
AciI	CCGC	2 cut(s)	67, 400
AclWI	GGATC	2 cut(s)	67, 111
AcsI	RAATTY	1 cut(s)	235
AcuI	CTGAAG	1 cut(s)	215
AcyI	GRCGYC	2 cut(s)	36, 262
AfaI	GTAC	4 cut(s)	5, 128, 191, 323
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	45, 75
AluBI	AGCT	4 cut(s)	118, 144, 224, 308
AluI	AGCT	4 cut(s)	118, 144, 224, 308
AlwI	GGATC	2 cut(s)	67, 111
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	1 cut(s)	235
AspLEI	GCGC	2 cut(s)	12, 229
AspS9I	GGNCC	1 cut(s)	49
AsuC2I	CCSGG	1 cut(s)	33
AsuHPI	GGTGA	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	47, 77
BcnI	CCSGG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	313
BfoI	RGCGCY	1 cut(s)	13
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	1 cut(s)	225
BlpI	GCTNAGC	1 cut(s)	119
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	3 cut(s)	33, 47, 77
BmgT120I	GGNCC	1 cut(s)	49
BmrFI	CCNGG	3 cut(s)	33, 47, 77
Bpu1102I	GCTNAGC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	204
BpuMI	CCSGG	1 cut(s)	33
BsaHI	GRCGYC	2 cut(s)	36, 262
BsaJI	CCNNGG	3 cut(s)	31, 45, 46
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	2 cut(s)	47, 77
BseDI	CCNNGG	3 cut(s)	31, 45, 46
BseMII	CTCAG	1 cut(s)	110
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	2 cut(s)	128, 409
BseXI	GCAGC	1 cut(s)	211
BshFI	GGCC	1 cut(s)	51
BsiSI	CCGG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	249
BsnI	GGCC	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	72, 103, 135
Bsp1720I	GCTNAGC	1 cut(s)	119
BspACI	CCGC	2 cut(s)	67, 400
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	67, 111
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	3 cut(s)	31, 45, 46
BssMI	GATC	3 cut(s)	72, 103, 135
BssNI	GRCGYC	2 cut(s)	36, 262
Bst2UI	CCWGG	2 cut(s)	47, 77
BstACI	GRCGYC	2 cut(s)	36, 262
BstDEI	CTNAG	1 cut(s)	119
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	12, 229
BstKTI	GATC	3 cut(s)	75, 106, 138
BstMBI	GATC	3 cut(s)	72, 103, 135
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	2 cut(s)	47, 77
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	3 cut(s)	31, 45, 75
BstSFI	CTRYAG	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	2 cut(s)	72, 103
BstXI	CCANNNNNNTGG	1 cut(s)	179
BstYI	RGATCY	2 cut(s)	72, 103
BsuRI	GGCC	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	240
BveI	ACCTGC	1 cut(s)	237
CfoI	GCGC	2 cut(s)	12, 229
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	2 cut(s)	25, 251
Csp6I	GTAC	4 cut(s)	4, 127, 190, 322
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	3 cut(s)	175, 215, 364
CviJI	RGCY	8 cut(s)	51, 56, 118, 144, 167, 224, 308, 351
CviKI_1	RGCY	8 cut(s)	51, 56, 118, 144, 167, 224, 308, 351
CviQI	GTAC	4 cut(s)	4, 127, 190, 322
DdeI	CTNAG	1 cut(s)	119
DpnI	GATC	3 cut(s)	74, 105, 137
DpnII	GATC	3 cut(s)	72, 103, 135
Eco32I	GATATC	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	45, 75
EcoRV	GATATC	1 cut(s)	151
FaeI	CATG	3 cut(s)	178, 218, 367
FaiI	YATR	7 cut(s)	20, 99, 176, 216, 255, 337, 365
FalI	AAGNNNNNCTT	2 cut(s)	213, 245
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	3 cut(s)	174, 214, 363
FauI	CCCGC	1 cut(s)	74
FblI	GTMKAC	2 cut(s)	39, 276
Fnu4HI	GCNGC	1 cut(s)	225
Fsp4HI	GCNGC	1 cut(s)	225
GlaI	GCGC	2 cut(s)	11, 228
GluI	GCNGC	1 cut(s)	225
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	33
HgaI	GACGC	2 cut(s)	25, 251
HhaI	GCGC	2 cut(s)	12, 229
Hin1I	GRCGYC	2 cut(s)	36, 262
Hin1II	CATG	3 cut(s)	178, 218, 367
Hin6I	GCGC	2 cut(s)	10, 227
HinP1I	GCGC	2 cut(s)	10, 227
HincII	GTYRAC	2 cut(s)	40, 277
HindII	GTYRAC	2 cut(s)	40, 277
HindIII	AAGCTT	1 cut(s)	142
HpaII	CCGG	1 cut(s)	33
HphI	GGTGA	1 cut(s)	276
Hpy166II	GTNNAC	3 cut(s)	40, 190, 277
Hpy188I	TCNGA	1 cut(s)	234
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	3 cut(s)	40, 190, 277
Hpy99I	CGWCG	2 cut(s)	41, 278
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	257, 339, 357, 367
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	1 cut(s)	119
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	2 cut(s)	36, 262
Hsp92II	CATG	3 cut(s)	178, 218, 367
HspAI	GCGC	2 cut(s)	10, 227
Kzo9I	GATC	3 cut(s)	72, 103, 135
LmnI	GCTCC	1 cut(s)	115
Lsp1109I	GCAGC	1 cut(s)	211
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	3 cut(s)	74, 105, 137
MboI	GATC	3 cut(s)	72, 103, 135
MboII	GAAGA	3 cut(s)	221, 338, 385
MflI	RGATCY	2 cut(s)	72, 103
MluCI	AATT	3 cut(s)	160, 235, 378
MnlI	CCTC	8 cut(s)	68, 82, 94, 106, 199, 338, 387, 390
MspI	CCGG	1 cut(s)	33
MspR9I	CCNGG	3 cut(s)	33, 47, 77
MvaI	CCWGG	2 cut(s)	47, 77
MwoI	GCNNNNNNNGC	1 cut(s)	224
NciI	CCSGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	72, 103, 135
NlaIII	CATG	3 cut(s)	178, 218, 367
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	1 cut(s)	218
PasI	CCCWGGG	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	45, 75
PspGI	CCWGG	2 cut(s)	45, 75
PspPI	GGNCC	1 cut(s)	49
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PsuI	RGATCY	2 cut(s)	72, 103
RsaI	GTAC	4 cut(s)	5, 128, 191, 323
RsaNI	GTAC	4 cut(s)	4, 127, 190, 322
SalI	GTCGAC	2 cut(s)	38, 275
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	3 cut(s)	72, 103, 135
Sau96I	GGNCC	1 cut(s)	49
ScrFI	CCNGG	3 cut(s)	33, 47, 77
SetI	ASST	8 cut(s)	120, 146, 195, 226, 251, 310, 314, 349
SfcI	CTRYAG	1 cut(s)	313
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
Sse9I	AATT	3 cut(s)	160, 235, 378
SsiI	CCGC	2 cut(s)	67, 400
StyD4I	CCNGG	3 cut(s)	31, 45, 75
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	7 cut(s)	39, 60, 87, 111, 138, 276, 343
TasI	AATT	3 cut(s)	160, 235, 378
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	2 cut(s)	144, 308
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	218
XmiI	GTMKAC	2 cut(s)	39, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.