RchiOBHm_Chr3g0472021

Splicing factor U2af small subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
17841863 .. 17845412
3550 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43775

Sequence Viewer

Length: 978 bp
ATGGCGGAGCACTTGGCATCGATCTTCGGCACAGAGAAGGACAGGGTTAACTGCCCTTTCTACTTCAAGATCGGCGCCTGCCGACATGGCGACCGCTGCTCTCGCCTCCACACCAAGCCCAGCATCAGCCCCACCCTTCTCCTCTCCAACATGTACCAGCGCCCCGATATGCTCACCAACCCCGGCGTCGACCCTCAGGGCCAGGCCCTCGACCCCCGCAAGATCCAAGACAACTTCGAGGATTTCTATGAGGATCTATTCGAGGAGCTGAGCAAGTACGGACAGATCGAGAGCTTGAATATCTGTGATAATTTGGCTGACCACATGGTTGGGAATGTGTACGTTCAGTTCAGGGAGGAAGAACATGCTGCCGCCGCGCTTCAGAATCTCACTGGGAGGTTCTATGCAGGGCGCCCCATCATTGTTGACTTTTCACCGGTGACCGACTTCCGTGAAGCTACTTGTAGGCAGTATGAAGAAAATGTATGCAATCGAGGTGGCTACTGCAATTTCATGCATTTAAAGAAGATTAGCAGGGAATTGAGGAGGCGATTATTTGGAAGAAACAGGCGAAGGCGGAGCCGCAGTCGCAGCAGAAGCCATAGTCCTCAAAAGCATCAGCGTGGTGGTTATCAGGAGCGTCCACACGGAGGTCGTGGTTTTGGCAGAAGAGGAGGAGATGATGAAAGAGATCGTTTCAATGATAAAAACAGGAGGCCTAGAAGCCGTAGTCCTGGTGGACGTAGAGGAAGAAGTAGAAGCCCTGTGGGGAGAAGGAATAGGAGTCCTCCAGCCAGGGAAAGCAGTGCTGAAAGAAGGGCCAAGATTGAGCAATGGAACAGGGAAAAGGAACAGGTTGATTCTGGAGAAAAGCATGATAATAATAATAACAACAGCAACAATAATGATGATGAATGGAATGGTGATAATAATAGTGATCAGTACTACGATCCTCAGCAGCAGCAGCAACAGCAGTAG

Protein Analysis

325

Amino Acids

37.97

Weight (kDa)

9.5

Isoelectric Point (pI)

78.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 14 - 37 2.5e-07 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1 PF00076 84 - 140 2.7e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 74, 411
AccI GTMKAC 1 cut(s) 189
AccII CGCG 1 cut(s) 377
AciI CCGC 7 cut(s) 5, 94, 217, 372, 375, 577, 583
AclWI GGATC 3 cut(s) 217, 261, 944
AcuI CTGAAG 1 cut(s) 365
AcyI GRCGYC 3 cut(s) 75, 186, 412
AfaI GTAC 4 cut(s) 155, 278, 341, 944
AfiI CCNNNNNNNGG 1 cut(s) 650
AflIII ACRYGT 1 cut(s) 150
AgeI ACCGGT 1 cut(s) 436
AgsI TTSAA 3 cut(s) 67, 298, 700
AjnI CCWGG 3 cut(s) 201, 733, 794
AluBI AGCT 3 cut(s) 268, 294, 458
AluI AGCT 3 cut(s) 268, 294, 458
Alw21I GWGCWC 1 cut(s) 12
AlwI GGATC 3 cut(s) 217, 261, 944
AoxI GGCC 4 cut(s) 199, 204, 716, 819
ApeKI GCWGC 6 cut(s) 96, 368, 591, 958, 961, 964
AsiGI ACCGGT 1 cut(s) 436
AspLEI GCGC 4 cut(s) 77, 162, 379, 414
AspS9I GGNCC 3 cut(s) 199, 205, 819
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 4 cut(s) 166, 426, 451, 935
AxyI CCTNAGG 1 cut(s) 195
BanI GGYRCC 2 cut(s) 74, 411
Bbv12I GWGCWC 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 954
BbvI GCAGC 5 cut(s) 83, 355, 603, 970, 973
BccI CCATC 1 cut(s) 425
BceAI ACGGC 1 cut(s) 711
BciT130I CCWGG 3 cut(s) 203, 735, 796
BclI TGATCA 1 cut(s) 937
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 1 cut(s) 720
BfoI RGCGCY 3 cut(s) 78, 163, 415
BglI GCCNNNNNGGC 1 cut(s) 87
BisI GCNGC 9 cut(s) 97, 369, 372, 375, 583, 592, 959, 962, 965
BlpI GCTNAGC 1 cut(s) 269
BlsI GCNGC 9 cut(s) 98, 370, 373, 376, 584, 593, 960, 963, 966
BmcAI AGTACT 1 cut(s) 944
Bme1390I CCNGG 4 cut(s) 183, 203, 735, 796
BmgT120I GGNCC 3 cut(s) 199, 205, 819
BmiI GGNNCC 3 cut(s) 76, 413, 581
BmrFI CCNGG 4 cut(s) 183, 203, 735, 796
BmrI ACTGGG 1 cut(s) 402
BmsI GCATC 3 cut(s) 26, 132, 625
BmuI ACTGGG 1 cut(s) 402
BpmI CTGGAG 2 cut(s) 774, 885
Bpu10I CCTNAGC 1 cut(s) 954
Bpu1102I GCTNAGC 1 cut(s) 269
BpuMI CCSGG 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 20
BsaHI GRCGYC 3 cut(s) 75, 186, 412
BsaJI CCNNGG 2 cut(s) 181, 795
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 1 cut(s) 650
Bse118I RCCGGY 1 cut(s) 436
Bse1I ACTGG 1 cut(s) 397
Bse21I CCTNAGG 1 cut(s) 195
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 3 cut(s) 203, 735, 796
BseCI ATCGAT 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 181, 795
BseLI CCNNNNNNNGG 1 cut(s) 650
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 3 cut(s) 209, 260, 968
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 5 cut(s) 131, 278, 559, 687, 690
BseXI GCAGC 5 cut(s) 83, 355, 603, 970, 973
BseYI CCCAGC 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 377
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 4 cut(s) 201, 206, 718, 821
BshNI GGYRCC 2 cut(s) 74, 411
BshTI ACCGGT 1 cut(s) 436
BshVI ATCGAT 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 12
BsiSI CCGG 2 cut(s) 183, 437
BslI CCNNNNNNNGG 1 cut(s) 650
BsnI GGCC 4 cut(s) 201, 206, 718, 821
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 8 cut(s) 21, 69, 222, 253, 285, 691, 937, 949
Bsp1720I GCTNAGC 1 cut(s) 269
BspACI CCGC 7 cut(s) 5, 94, 217, 372, 375, 577, 583
BspANI GGCC 4 cut(s) 201, 206, 718, 821
BspCNI CTCAG 3 cut(s) 208, 261, 967
BspDI ATCGAT 1 cut(s) 20
BspFNI CGCG 1 cut(s) 377
BspLI GGNNCC 3 cut(s) 76, 413, 581
BspPI GGATC 3 cut(s) 217, 261, 944
BspT107I GGYRCC 2 cut(s) 74, 411
BsrDI GCAATG 1 cut(s) 839
BsrFI RCCGGY 1 cut(s) 436
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 2 cut(s) 181, 795
BssMI GATC 8 cut(s) 21, 69, 222, 253, 285, 691, 937, 949
BssNI GRCGYC 3 cut(s) 75, 186, 412
Bst2UI CCWGG 3 cut(s) 203, 735, 796
Bst6I CTCTTC 1 cut(s) 664
BstACI GRCGYC 3 cut(s) 75, 186, 412
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 3 cut(s) 195, 269, 954
BstEII GGTNACC 1 cut(s) 439
BstFNI CGCG 1 cut(s) 377
BstH2I RGCGCY 3 cut(s) 78, 163, 415
BstHHI GCGC 4 cut(s) 77, 162, 379, 414
BstKTI GATC 8 cut(s) 24, 72, 225, 256, 288, 694, 940, 952
BstMBI GATC 8 cut(s) 21, 69, 222, 253, 285, 691, 937, 949
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 9 cut(s) 87, 96, 102, 374, 588, 591, 597, 964, 970
BstNI CCWGG 3 cut(s) 203, 735, 796
BstNSI RCATGY 2 cut(s) 154, 368
BstPI GGTNACC 1 cut(s) 439
BstSCI CCNGG 4 cut(s) 181, 201, 733, 794
BstUI CGCG 1 cut(s) 377
BstV1I GCAGC 5 cut(s) 83, 355, 603, 970, 973
BstX2I RGATCY 2 cut(s) 222, 253
BstXI CCANNNNNNTGG 1 cut(s) 329
BstYI RGATCY 2 cut(s) 222, 253
Bsu15I ATCGAT 1 cut(s) 20
Bsu36I CCTNAGG 1 cut(s) 195
BsuRI GGCC 4 cut(s) 201, 206, 718, 821
BsuTUI ATCGAT 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 811
BtsIMutI CAGTG 2 cut(s) 390, 811
Cac8I GCNNGC 1 cut(s) 79
CfoI GCGC 4 cut(s) 77, 162, 379, 414
Cfr10I RCCGGY 1 cut(s) 436
Cfr13I GGNCC 3 cut(s) 199, 205, 819
ClaI ATCGAT 1 cut(s) 20
CseI GACGC 2 cut(s) 175, 629
Csp6I GTAC 4 cut(s) 154, 277, 340, 943
CspAI ACCGGT 1 cut(s) 436
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviAII CATG 6 cut(s) 86, 151, 325, 365, 514, 875
CviQI GTAC 4 cut(s) 154, 277, 340, 943
DdeI CTNAG 3 cut(s) 195, 269, 954
DinI GGCGCC 2 cut(s) 76, 413
DpnI GATC 8 cut(s) 23, 71, 224, 255, 287, 693, 939, 951
DpnII GATC 8 cut(s) 21, 69, 222, 253, 285, 691, 937, 949
DraI TTTAAA 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 664
EarI CTCTTC 1 cut(s) 664
EciI GGCGGA 2 cut(s) 20, 592
Eco147I AGGCCT 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 365
Eco81I CCTNAGG 1 cut(s) 195
Eco91I GGTNACC 1 cut(s) 439
EcoO109I RGGNCCY 1 cut(s) 205
EcoO65I GGTNACC 1 cut(s) 439
EcoRII CCWGG 3 cut(s) 201, 733, 794
EcoT22I ATGCAT 1 cut(s) 519
EgeI GGCGCC 2 cut(s) 76, 413
EheI GGCGCC 2 cut(s) 76, 413
FaeI CATG 6 cut(s) 89, 154, 328, 368, 517, 878
FatI CATG 6 cut(s) 85, 150, 324, 364, 513, 874
FauI CCCGC 1 cut(s) 224
FbaI TGATCA 1 cut(s) 937
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 9 cut(s) 97, 369, 372, 375, 583, 592, 959, 962, 965
Fsp4HI GCNGC 9 cut(s) 97, 369, 372, 375, 583, 592, 959, 962, 965
FspBI CTAG 1 cut(s) 720
GlaI GCGC 4 cut(s) 76, 161, 378, 413
GluI GCNGC 9 cut(s) 97, 369, 372, 375, 583, 592, 959, 962, 965
GsaI CCCAGC 1 cut(s) 123
GsuI CTGGAG 2 cut(s) 774, 885
HaeII RGCGCY 3 cut(s) 78, 163, 415
HaeIII GGCC 4 cut(s) 201, 206, 718, 821
HapII CCGG 2 cut(s) 183, 437
HgaI GACGC 2 cut(s) 175, 629
HhaI GCGC 4 cut(s) 77, 162, 379, 414
Hin1I GRCGYC 3 cut(s) 75, 186, 412
Hin1II CATG 6 cut(s) 89, 154, 328, 368, 517, 878
Hin6I GCGC 4 cut(s) 75, 160, 377, 412
HinP1I GCGC 4 cut(s) 75, 160, 377, 412
HincII GTYRAC 3 cut(s) 49, 190, 427
HindII GTYRAC 3 cut(s) 49, 190, 427
HinfI GANTC 3 cut(s) 385, 784, 860
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 2 cut(s) 183, 437
HphI GGTGA 4 cut(s) 166, 426, 451, 935
Hpy166II GTNNAC 6 cut(s) 49, 190, 340, 427, 644, 740
Hpy188I TCNGA 1 cut(s) 384
Hpy188III TCNNGA 4 cut(s) 67, 289, 635, 864
Hpy8I GTNNAC 6 cut(s) 49, 190, 340, 427, 644, 740
Hpy99I CGWCG 1 cut(s) 191
HpyAV CCTTC 5 cut(s) 31, 146, 567, 768, 810
HpyCH4IV ACGT 2 cut(s) 342, 742
HpyCH4V TGCA 4 cut(s) 407, 489, 507, 517
HpyF10VI GCNNNNNNNGC 9 cut(s) 87, 96, 102, 374, 588, 591, 597, 964, 970
HpyF3I CTNAG 3 cut(s) 195, 269, 954
HpySE526I ACGT 2 cut(s) 342, 742
Hsp92I GRCGYC 3 cut(s) 75, 186, 412
Hsp92II CATG 6 cut(s) 89, 154, 328, 368, 517, 878
HspAI GCGC 4 cut(s) 75, 160, 377, 412
KasI GGCGCC 2 cut(s) 74, 411
Ksp22I TGATCA 1 cut(s) 937
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 8 cut(s) 21, 69, 222, 253, 285, 691, 937, 949
LmnI GCTCC 4 cut(s) 7, 265, 579, 637
Lsp1109I GCAGC 5 cut(s) 83, 355, 603, 970, 973
LweI GCATC 3 cut(s) 26, 132, 625
MaeI CTAG 1 cut(s) 720
MaeII ACGT 2 cut(s) 342, 742
MaeIII GTNAC 1 cut(s) 439
MalI GATC 8 cut(s) 23, 71, 224, 255, 287, 693, 939, 951
MboI GATC 8 cut(s) 21, 69, 222, 253, 285, 691, 937, 949
MboII GAAGA 7 cut(s) 16, 371, 488, 538, 573, 681, 762
MflI RGATCY 2 cut(s) 222, 253
MhlI GDGCHC 1 cut(s) 12
MluCI AATT 3 cut(s) 310, 508, 539
Mly113I GGCGCC 2 cut(s) 75, 412
MlyI GAGTC 1 cut(s) 793
MmeI TCCRAC 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 519
MseI TTAA 2 cut(s) 48, 521
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 96
MspI CCGG 2 cut(s) 183, 437
MspR9I CCNGG 4 cut(s) 183, 203, 735, 796
MvaI CCWGG 3 cut(s) 203, 735, 796
MvnI CGCG 1 cut(s) 377
MwoI GCNNNNNNNGC 9 cut(s) 87, 96, 102, 374, 588, 591, 597, 964, 970
NarI GGCGCC 2 cut(s) 75, 412
NciI CCSGG 1 cut(s) 183
NdeII GATC 8 cut(s) 21, 69, 222, 253, 285, 691, 937, 949
NlaIII CATG 6 cut(s) 89, 154, 328, 368, 517, 878
NlaIV GGNNCC 3 cut(s) 76, 413, 581
NmuCI GTSAC 1 cut(s) 439
NsiI ATGCAT 1 cut(s) 519
NspI RCATGY 2 cut(s) 154, 368
PceI AGGCCT 1 cut(s) 718
PciI ACATGT 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PfeI GAWTC 2 cut(s) 385, 860
PinAI ACCGGT 1 cut(s) 436
PkrI GCNGC 9 cut(s) 98, 370, 373, 376, 584, 593, 960, 963, 966
PleI GAGTC 1 cut(s) 792
PluTI GGCGCC 2 cut(s) 78, 415
PpsI GAGTC 1 cut(s) 792
PscI ACATGT 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 201, 733, 794
PspEI GGTNACC 1 cut(s) 439
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 3 cut(s) 201, 733, 794
PspN4I GGNNCC 3 cut(s) 76, 413, 581
PspPI GGNCC 3 cut(s) 199, 205, 819
PsrI GAACNNNNNNTAC 2 cut(s) 332, 364
PsuI RGATCY 2 cut(s) 222, 253
RsaI GTAC 4 cut(s) 155, 278, 341, 944
RsaNI GTAC 4 cut(s) 154, 277, 340, 943
RseI CAYNNNNRTG 1 cut(s) 621
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 48, 521
SatI GCNGC 9 cut(s) 97, 369, 372, 375, 583, 592, 959, 962, 965
Sau3AI GATC 8 cut(s) 21, 69, 222, 253, 285, 691, 937, 949
Sau96I GGNCC 3 cut(s) 199, 205, 819
ScaI AGTACT 1 cut(s) 944
SchI GAGTC 1 cut(s) 793
ScrFI CCNGG 4 cut(s) 183, 203, 735, 796
SduI GDGCHC 1 cut(s) 12
SetI ASST 9 cut(s) 270, 296, 345, 401, 460, 499, 655, 745, 858
SfaNI GCATC 3 cut(s) 26, 132, 625
SfoI GGCGCC 2 cut(s) 76, 413
SgrAI CRCCGGYG 1 cut(s) 436
SmiMI CAYNNNNRTG 1 cut(s) 621
Sse9I AATT 3 cut(s) 310, 508, 539
SseBI AGGCCT 1 cut(s) 718
SsiI CCGC 7 cut(s) 5, 94, 217, 372, 375, 577, 583
SspDI GGCGCC 2 cut(s) 74, 411
SspMI CTAG 1 cut(s) 720
StuI AGGCCT 1 cut(s) 718
StyD4I CCNGG 4 cut(s) 181, 201, 733, 794
TaiI ACGT 2 cut(s) 345, 745
TaqI TCGA 7 cut(s) 20, 189, 210, 237, 261, 288, 493
TaqII GACCGA 1 cut(s) 458
TasI AATT 3 cut(s) 310, 508, 539
TatI WGTACW 1 cut(s) 942
TauI GCSGC 3 cut(s) 374, 377, 585
TfiI GAWTC 2 cut(s) 385, 860
Tru1I TTAA 2 cut(s) 48, 521
Tru9I TTAA 2 cut(s) 48, 521
TscAI CASTG 2 cut(s) 397, 811
TseFI GTSAC 1 cut(s) 439
TseI GCWGC 6 cut(s) 96, 368, 591, 958, 961, 964
Tsp45I GTSAC 1 cut(s) 439
TspDTI ATGAA 4 cut(s) 489, 502, 699, 927
TspGWI ACGGA 3 cut(s) 294, 440, 663
TspRI CASTG 2 cut(s) 397, 811
XceI RCATGY 2 cut(s) 154, 368
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 720
ZrmI AGTACT 1 cut(s) 944
Zsp2I ATGCAT 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.