Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Reverse (-)

14304767 .. 14307862

Gene Structure 3096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G118600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGGAGCACTTAGCATCCATCTTCGGCACAGAGAAGGACCGTGTCAACTGTCCCTTCTACTTCAAGATCGGTGCTTGCAGGCATGGCGACCGATGCTCTCGCCTCCACACCAAGCCCAGCATCAGCCCCACCCTTCTGCTTTCCAACATGTACCAGCGGCCCGATATGCTCACCAACCCCGGCGTCGACCCCCAGGGCCAAGCCTTAGACCCTCGAAAGATCCAAGACAACTTCGAGGATTTTTATGAGGATCTGTTTGAGGAGCTGAGCAAGTATGGACAGATCGAGAGCTTGAATATCTGTGATAATTTGGCTGACCACATGGTTGGTAATGTGTACGTTCAGTTCAGGGAGGAAGAACATGCTCAAGCTGCGCTTCAGAATCTCACTGGGAGGTTCTATGCAGGGCGCCCCATCATCGTTGACTTTTCCCCGGTGACGGATTTTCGTGAAGCTACATGTAGGCAGTATGAAGAAAATGTATGCAATCGAGGTGGCTATTGCAACTTCATGCATTTGAAGAAAATTAGCAGGGAGTTGAGGAGGCGATTATTTGGGAGAAACAGGAGAAGGCATAGTCGCAGTCGAAGCAGAAGCCGTAGTCCTCAAAGGCATCATCGTGGTGGTTATCAGGAGCGACCACATGGAGGACGCGGTTTTGGCAGAAGAGGAGGAGGAGGAGGAGATGATGACAGAGATCATCGTTTCCATGATAAAGCAAGGAGGCCTAGAAGCCGTAGTCCTGGACGTAGAGGAAGAAGTAGAAGCCCTGTGGGCACTGGGGGCAAAAGGAATAGGAGTCCTCCAGCCAGGGAAAGCAGTGCTGAAAGAAGGGCTAAGATCGAGCAATGGAACAGGGAACGGGAACAGGTGGACTCCGGAAGTAAGTATGATAATAACAACAACAATAACAGTAATGATGATGAATGGAATGGTTATGCTGAGAACAGCGATCAGTACTACGAAGATCCTCAGCAGCAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

331

Amino Acids

38.37

Weight (kDa)

9.48

Isoelectric Point (pI)

76.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	411
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	657
AccIII	TCCGGA	1 cut(s)	881
AciI	CCGC	3 cut(s)	5, 160, 657
AclWI	GGATC	3 cut(s)	217, 261, 965
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	2 cut(s)	186, 412
AfaI	GTAC	3 cut(s)	155, 341, 962
AfiI	CCNNNNNNNGG	2 cut(s)	442, 650
AflIII	ACRYGT	2 cut(s)	150, 461
AgsI	TTSAA	3 cut(s)	67, 298, 523
AjnI	CCWGG	3 cut(s)	195, 745, 812
AluBI	AGCT	4 cut(s)	268, 294, 374, 458
AluI	AGCT	4 cut(s)	268, 294, 374, 458
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	217, 261, 965
Aor13HI	TCCGGA	1 cut(s)	881
AoxI	GGCC	3 cut(s)	161, 199, 728
ApeKI	GCWGC	4 cut(s)	374, 979, 982, 985
AspLEI	GCGC	2 cut(s)	379, 414
AspS9I	GGNCC	3 cut(s)	40, 162, 199
AsuC2I	CCSGG	2 cut(s)	183, 437
AsuHPI	GGTGA	2 cut(s)	166, 451
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	782
BanI	GGYRCC	1 cut(s)	411
Bbv12I	GWGCWC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	975
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	2 cut(s)	29, 425
BceAI	ACGGC	2 cut(s)	585, 723
BciT130I	CCWGG	3 cut(s)	197, 747, 814
BcnI	CCSGG	2 cut(s)	183, 437
BfaI	CTAG	1 cut(s)	732
BfoI	RGCGCY	1 cut(s)	415
BglI	GCCNNNNNGGC	1 cut(s)	777
BisI	GCNGC	5 cut(s)	161, 375, 980, 983, 986
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	5 cut(s)	162, 376, 981, 984, 987
BmcAI	AGTACT	1 cut(s)	962
Bme1390I	CCNGG	5 cut(s)	183, 197, 437, 747, 814
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	3 cut(s)	40, 162, 199
BmiI	GGNNCC	1 cut(s)	413
BmrFI	CCNGG	5 cut(s)	183, 197, 437, 747, 814
BmrI	ACTGGG	2 cut(s)	402, 792
BmsI	GCATC	4 cut(s)	26, 86, 132, 625
BmuI	ACTGGG	2 cut(s)	402, 792
BpmI	CTGGAG	1 cut(s)	792
Bpu10I	CCTNAGC	1 cut(s)	975
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuEI	CTTGAG	1 cut(s)	354
BpuMI	CCSGG	2 cut(s)	183, 437
BsaHI	GRCGYC	2 cut(s)	186, 412
BsaJI	CCNNGG	5 cut(s)	181, 195, 196, 435, 813
BsaWI	WCCGGW	1 cut(s)	881
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 650
Bse1I	ACTGG	2 cut(s)	397, 787
Bse3DI	GCAATG	1 cut(s)	857
BseAI	TCCGGA	1 cut(s)	881
BseBI	CCWGG	3 cut(s)	197, 747, 814
BseDI	CCNNGG	5 cut(s)	181, 195, 196, 435, 813
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	442, 650
BseMI	GCAATG	1 cut(s)	857
BseMII	CTCAG	3 cut(s)	260, 936, 989
BseNI	ACTGG	2 cut(s)	397, 787
BseRI	GAGGAG	7 cut(s)	278, 559, 687, 690, 693, 696, 699
BseSI	GKGCMC	1 cut(s)	782
BseXI	GCAGC	1 cut(s)	361
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	657
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	163, 201, 730
BshNI	GGYRCC	1 cut(s)	411
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	3 cut(s)	183, 437, 882
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	442, 650
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	3 cut(s)	163, 201, 730
Bsp1286I	GDGCHC	2 cut(s)	12, 782
Bsp13I	TCCGGA	1 cut(s)	881
Bsp143I	GATC	8 cut(s)	69, 222, 253, 285, 700, 843, 955, 970
Bsp1720I	GCTNAGC	1 cut(s)	269
BspACI	CCGC	3 cut(s)	5, 160, 657
BspANI	GGCC	3 cut(s)	163, 201, 730
BspCNI	CTCAG	3 cut(s)	261, 937, 988
BspEI	TCCGGA	1 cut(s)	881
BspFNI	CGCG	1 cut(s)	657
BspLI	GGNNCC	1 cut(s)	413
BspPI	GGATC	3 cut(s)	217, 261, 965
BspT107I	GGYRCC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	857
BsrI	ACTGG	2 cut(s)	397, 787
BssECI	CCNNGG	5 cut(s)	181, 195, 196, 435, 813
BssMI	GATC	8 cut(s)	69, 222, 253, 285, 700, 843, 955, 970
BssNI	GRCGYC	2 cut(s)	186, 412
Bst2UI	CCWGG	3 cut(s)	197, 747, 814
Bst4CI	ACNGT	3 cut(s)	44, 53, 917
Bst6I	CTCTTC	1 cut(s)	664
BstACI	GRCGYC	2 cut(s)	186, 412
BstC8I	GCNNGC	2 cut(s)	79, 83
BstDEI	CTNAG	6 cut(s)	13, 208, 269, 840, 945, 975
BstF5I	GGATG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	657
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	2 cut(s)	379, 414
BstKTI	GATC	8 cut(s)	72, 225, 256, 288, 703, 846, 958, 973
BstMBI	GATC	8 cut(s)	69, 222, 253, 285, 700, 843, 955, 970
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	9 cut(s)	87, 96, 169, 374, 591, 663, 777, 786, 985
BstNI	CCWGG	3 cut(s)	197, 747, 814
BstNSI	RCATGY	3 cut(s)	154, 368, 465
BstSCI	CCNGG	5 cut(s)	181, 195, 435, 745, 812
BstSLI	GKGCMC	1 cut(s)	782
BstUI	CGCG	1 cut(s)	657
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	3 cut(s)	222, 253, 970
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstYI	RGATCY	3 cut(s)	222, 253, 970
BsuRI	GGCC	3 cut(s)	163, 201, 730
BtsCI	GGATG	1 cut(s)	17
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	3 cut(s)	390, 780, 829
Cac8I	GCNNGC	2 cut(s)	79, 83
CfoI	GCGC	2 cut(s)	379, 414
Cfr13I	GGNCC	3 cut(s)	40, 162, 199
CseI	GACGC	2 cut(s)	175, 663
Csp6I	GTAC	3 cut(s)	154, 340, 961
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	8 cut(s)	86, 151, 325, 365, 462, 514, 647, 713
CviQI	GTAC	3 cut(s)	154, 340, 961
DdeI	CTNAG	6 cut(s)	13, 208, 269, 840, 945, 975
DinI	GGCGCC	1 cut(s)	413
DpnI	GATC	8 cut(s)	71, 224, 255, 287, 702, 845, 957, 972
DpnII	GATC	8 cut(s)	69, 222, 253, 285, 700, 843, 955, 970
Eam1104I	CTCTTC	1 cut(s)	664
EarI	CTCTTC	1 cut(s)	664
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	730
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	3 cut(s)	195, 745, 812
EcoT22I	ATGCAT	1 cut(s)	519
EgeI	GGCGCC	1 cut(s)	413
EheI	GGCGCC	1 cut(s)	413
FaeI	CATG	8 cut(s)	89, 154, 328, 368, 465, 517, 650, 716
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	8 cut(s)	85, 150, 324, 364, 461, 513, 646, 712
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	161, 375, 980, 983, 986
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	5 cut(s)	161, 375, 980, 983, 986
FspBI	CTAG	1 cut(s)	732
GlaI	GCGC	2 cut(s)	378, 413
GluI	GCNGC	5 cut(s)	161, 375, 980, 983, 986
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	792
HaeII	RGCGCY	1 cut(s)	415
HaeIII	GGCC	3 cut(s)	163, 201, 730
HapII	CCGG	3 cut(s)	183, 437, 882
HgaI	GACGC	2 cut(s)	175, 663
HhaI	GCGC	2 cut(s)	379, 414
Hin1I	GRCGYC	2 cut(s)	186, 412
Hin1II	CATG	8 cut(s)	89, 154, 328, 368, 465, 517, 650, 716
Hin6I	GCGC	2 cut(s)	377, 412
HinP1I	GCGC	2 cut(s)	377, 412
HincII	GTYRAC	3 cut(s)	49, 190, 427
HindII	GTYRAC	3 cut(s)	49, 190, 427
HinfI	GANTC	3 cut(s)	385, 802, 878
HpaII	CCGG	3 cut(s)	183, 437, 882
HphI	GGTGA	2 cut(s)	166, 451
Hpy166II	GTNNAC	5 cut(s)	49, 190, 340, 427, 877
Hpy188I	TCNGA	1 cut(s)	384
Hpy188III	TCNNGA	5 cut(s)	67, 289, 452, 635, 882
Hpy8I	GTNNAC	5 cut(s)	49, 190, 340, 427, 877
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	5 cut(s)	31, 67, 146, 567, 828
HpyCH4III	ACNGT	3 cut(s)	44, 53, 917
HpyCH4IV	ACGT	2 cut(s)	342, 751
HpyCH4V	TGCA	5 cut(s)	81, 407, 489, 507, 517
HpyF10VI	GCNNNNNNNGC	9 cut(s)	87, 96, 169, 374, 591, 663, 777, 786, 985
HpyF3I	CTNAG	6 cut(s)	13, 208, 269, 840, 945, 975
HpySE526I	ACGT	2 cut(s)	342, 751
Hsp92I	GRCGYC	2 cut(s)	186, 412
Hsp92II	CATG	8 cut(s)	89, 154, 328, 368, 465, 517, 650, 716
HspAI	GCGC	2 cut(s)	377, 412
KasI	GGCGCC	1 cut(s)	411
Kpn2I	TCCGGA	1 cut(s)	881
Kzo9I	GATC	8 cut(s)	69, 222, 253, 285, 700, 843, 955, 970
LmnI	GCTCC	3 cut(s)	7, 265, 637
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	4 cut(s)	26, 86, 132, 625
MaeI	CTAG	1 cut(s)	732
MaeII	ACGT	2 cut(s)	342, 751
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	8 cut(s)	71, 224, 255, 287, 702, 845, 957, 972
MboI	GATC	8 cut(s)	69, 222, 253, 285, 700, 843, 955, 970
MboII	GAAGA	7 cut(s)	16, 371, 488, 535, 681, 771, 980
MflI	RGATCY	3 cut(s)	222, 253, 970
MhlI	GDGCHC	2 cut(s)	12, 782
MluCI	AATT	2 cut(s)	310, 528
Mly113I	GGCGCC	1 cut(s)	412
MlyI	GAGTC	2 cut(s)	811, 872
MmeI	TCCRAC	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	519
MroI	TCCGGA	1 cut(s)	881
MslI	CAYNNNNRTG	2 cut(s)	621, 624
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	3 cut(s)	183, 437, 882
MspR9I	CCNGG	5 cut(s)	183, 197, 437, 747, 814
MvaI	CCWGG	3 cut(s)	197, 747, 814
MvnI	CGCG	1 cut(s)	657
MwoI	GCNNNNNNNGC	9 cut(s)	87, 96, 169, 374, 591, 663, 777, 786, 985
NarI	GGCGCC	1 cut(s)	412
NciI	CCSGG	2 cut(s)	183, 437
NdeII	GATC	8 cut(s)	69, 222, 253, 285, 700, 843, 955, 970
NlaIII	CATG	8 cut(s)	89, 154, 328, 368, 465, 517, 650, 716
NlaIV	GGNNCC	1 cut(s)	413
NmuCI	GTSAC	1 cut(s)	439
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	3 cut(s)	154, 368, 465
PasI	CCCWGGG	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	730
PciI	ACATGT	2 cut(s)	150, 461
PfeI	GAWTC	1 cut(s)	385
PflFI	GACNNNGTC	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	745
PkrI	GCNGC	5 cut(s)	162, 376, 981, 984, 987
PleI	GAGTC	2 cut(s)	810, 872
PluTI	GGCGCC	1 cut(s)	415
PpsI	GAGTC	2 cut(s)	810, 872
PscI	ACATGT	2 cut(s)	150, 461
Psp6I	CCWGG	3 cut(s)	195, 745, 812
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	3 cut(s)	195, 745, 812
PspN4I	GGNNCC	1 cut(s)	413
PspPI	GGNCC	3 cut(s)	40, 162, 199
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
PsuI	RGATCY	3 cut(s)	222, 253, 970
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	3 cut(s)	155, 341, 962
RsaNI	GTAC	3 cut(s)	154, 340, 961
RseI	CAYNNNNRTG	2 cut(s)	621, 624
SalI	GTCGAC	1 cut(s)	188
SatI	GCNGC	5 cut(s)	161, 375, 980, 983, 986
Sau3AI	GATC	8 cut(s)	69, 222, 253, 285, 700, 843, 955, 970
Sau96I	GGNCC	3 cut(s)	40, 162, 199
ScaI	AGTACT	1 cut(s)	962
SchI	GAGTC	2 cut(s)	811, 872
ScrFI	CCNGG	5 cut(s)	183, 197, 437, 747, 814
SduI	GDGCHC	2 cut(s)	12, 782
SetI	ASST	9 cut(s)	270, 296, 345, 376, 401, 460, 499, 754, 876
SfaNI	GCATC	4 cut(s)	26, 86, 132, 625
SfoI	GGCGCC	1 cut(s)	413
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	621, 624
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	310, 528
SseBI	AGGCCT	1 cut(s)	730
SsiI	CCGC	3 cut(s)	5, 160, 657
SspDI	GGCGCC	1 cut(s)	411
SspMI	CTAG	1 cut(s)	732
StuI	AGGCCT	1 cut(s)	730
StyD4I	CCNGG	5 cut(s)	181, 195, 435, 745, 812
TaaI	ACNGT	3 cut(s)	44, 53, 917
TaiI	ACGT	2 cut(s)	345, 754
TaqI	TCGA	7 cut(s)	189, 217, 237, 288, 493, 589, 846
TaqII	GACCGA	1 cut(s)	108
TasI	AATT	2 cut(s)	310, 528
TatI	WGTACW	1 cut(s)	960
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	385
TscAI	CASTG	3 cut(s)	397, 787, 829
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	4 cut(s)	374, 979, 982, 985
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	489, 502, 942
TspGWI	ACGGA	1 cut(s)	458
TspRI	CASTG	3 cut(s)	397, 787, 829
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	3 cut(s)	154, 368, 465
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	732
ZrmI	AGTACT	1 cut(s)	962
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.