Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Forward (+)

9834398 .. 9835420

Gene Structure 1023 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0121700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACTGAGGGGTGGTGGATTGACAATTTGACATATGCATTGACGTCATTTCTCAATGAGAATTCACCATCAGAATCTGAGCCGTTGACGACGACGCCAGAATCAGATGGTGCTGAGGGGAACAAAGGGGCAGGCTTCTACTGTGAGGCTGTTTTAGGGTTTGTGCTAATGCTCTTTGTCCCTTTAGTTTCACTGGAGGCAATTGGTTATATAAACCCTTGGTCAGTCAAGTTTGGGATCCCAGCCACATTCATCGTGGTATCACTTATTCTCTTCCTGATTAATTCAGCCGCAAAAGTTGAGACCCGGAGACTAGGCGTGGTTACAAGCCAGGGTGTGACTGATGAACCCAAGGAAATCATTCCCATGACCATGTTTTGGTTGCTTCCACAGTTTCTTCTCCTCGGGTTGTCTGAAGCGATTTCAGAGAAGAACATTACTGATTTCTTCACTAATGAGTTGGGCCCTCGAACCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

159

Amino Acids

17.53

Weight (kDa)

4.28

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	47
AccB7I	CCANNNNNTGG	1 cut(s)	378
AciI	CCGC	1 cut(s)	291
AclWI	GGATC	2 cut(s)	232, 245
AcsI	RAATTY	1 cut(s)	61
AcuI	CTGAAG	1 cut(s)	435
AcyI	GRCGYC	2 cut(s)	44, 95
AfiI	CCNNNNNNNGG	1 cut(s)	378
AjnI	CCWGG	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	296, 304
AlwI	GGATC	2 cut(s)	232, 245
AlwNI	CAGNNNCTG	1 cut(s)	77
Ama87I	CYCGRG	1 cut(s)	404
AoxI	GGCC	1 cut(s)	463
ApaI	GGGCCC	1 cut(s)	467
ApoI	RAATTY	1 cut(s)	61
AseI	ATTAAT	1 cut(s)	282
Asp700I	GAANNNNTTC	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	463, 464
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	467
BamHI	GGATCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	467
BbvCI	CCTCAGC	1 cut(s)	114
BccI	CCATC	2 cut(s)	76, 101
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	332
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	296, 304
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
Bme1390I	CCNGG	2 cut(s)	307, 332
BmeT110I	CYCGRG	1 cut(s)	404
BmgT120I	GGNCC	2 cut(s)	463, 464
BmiI	GGNNCC	2 cut(s)	239, 465
BmrFI	CCNGG	2 cut(s)	307, 332
BpmI	CTGGAG	1 cut(s)	215
Bpu10I	CCTNAGC	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	307
BsaHI	GRCGYC	2 cut(s)	44, 95
BsaI	GGTCTC	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	218, 331, 351, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	4 cut(s)	218, 331, 351, 403
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	69, 105
BseNI	ACTGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	1 cut(s)	467
BseYI	CCCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	465
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	2 cut(s)	296, 304
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	465
Bso31I	GGTCTC	1 cut(s)	296
BsoBI	CYCGRG	1 cut(s)	404
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	1 cut(s)	237
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	2 cut(s)	70, 106
BspLI	GGNNCC	2 cut(s)	239, 465
BspPI	GGATC	2 cut(s)	232, 245
BspTNI	GGTCTC	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	4 cut(s)	218, 331, 351, 403
BssMI	GATC	1 cut(s)	237
BssNI	GRCGYC	2 cut(s)	44, 95
BssT1I	CCWWGG	2 cut(s)	218, 351
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	2 cut(s)	143, 393
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	2 cut(s)	44, 95
BstC8I	GCNNGC	1 cut(s)	133
BstDEI	CTNAG	3 cut(s)	6, 78, 114
BstKTI	GATC	1 cut(s)	240
BstMAI	GTCTC	2 cut(s)	296, 304
BstMBI	GATC	1 cut(s)	237
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	2 cut(s)	305, 330
BstSLI	GKGCMC	1 cut(s)	467
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	133
CaiI	CAGNNNCTG	1 cut(s)	77
Cfr13I	GGNCC	2 cut(s)	463, 464
CseI	GACGC	1 cut(s)	103
CviAII	CATG	2 cut(s)	367, 373
CviJI	RGCY	7 cut(s)	82, 135, 149, 245, 290, 330, 465
CviKI_1	RGCY	7 cut(s)	82, 135, 149, 245, 290, 330, 465
DdeI	CTNAG	3 cut(s)	6, 78, 114
DpnI	GATC	1 cut(s)	239
DpnII	GATC	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco130I	CCWWGG	2 cut(s)	218, 351
Eco24I	GRGCYC	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	296
Eco57I	CTGAAG	1 cut(s)	435
Eco88I	CYCGRG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRI	GAATTC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	330
EcoT14I	CCWWGG	2 cut(s)	218, 351
EcoT22I	ATGCAT	1 cut(s)	40
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	2 cut(s)	218, 351
FaeI	CATG	2 cut(s)	370, 376
FaiI	YATR	6 cut(s)	34, 36, 210, 212, 368, 374
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	2 cut(s)	366, 372
FauNDI	CATATG	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	291
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	291
GsaI	CCCAGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	215
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	103
Hin1I	GRCGYC	2 cut(s)	44, 95
Hin1II	CATG	2 cut(s)	370, 376
HincII	GTYRAC	1 cut(s)	87
HindII	GTYRAC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	74, 101
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	5 cut(s)	73, 79, 106, 415, 427
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	87
Hpy99I	CGWCG	2 cut(s)	94, 97
HpyCH4III	ACNGT	2 cut(s)	143, 393
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	38
HpyF3I	CTNAG	3 cut(s)	6, 78, 114
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	2 cut(s)	44, 95
Hsp92II	CATG	2 cut(s)	370, 376
Kzo9I	GATC	1 cut(s)	237
LpnPI	CCDG	8 cut(s)	111, 117, 179, 255, 290, 317, 320, 344
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	2 cut(s)	322, 337
MalI	GATC	1 cut(s)	239
MboI	GATC	1 cut(s)	237
MboII	GAAGA	4 cut(s)	265, 389, 439, 442
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	1 cut(s)	467
MluCI	AATT	4 cut(s)	25, 61, 201, 283
MnlI	CCTC	5 cut(s)	109, 139, 190, 413, 477
Mph1103I	ATGCAT	1 cut(s)	40
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	2 cut(s)	365, 371
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	2 cut(s)	307, 332
MunI	CAATTG	1 cut(s)	201
MvaI	CCWGG	1 cut(s)	332
NciI	CCSGG	1 cut(s)	307
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	1 cut(s)	237
NlaIII	CATG	2 cut(s)	370, 376
NlaIV	GGNNCC	2 cut(s)	239, 465
NmuCI	GTSAC	1 cut(s)	337
NsiI	ATGCAT	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	74, 101
PflMI	CCANNNNNTGG	1 cut(s)	378
PkrI	GCNGC	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	2 cut(s)	239, 465
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	2 cut(s)	463, 464
PstNI	CAGNNNCTG	1 cut(s)	77
PsuI	RGATCY	1 cut(s)	237
RseI	CAYNNNNRTG	2 cut(s)	365, 371
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	1 cut(s)	237
Sau96I	GGNCC	2 cut(s)	463, 464
ScrFI	CCNGG	2 cut(s)	307, 332
SduI	GDGCHC	1 cut(s)	467
SetI	ASST	1 cut(s)	47
SmiMI	CAYNNNNRTG	2 cut(s)	365, 371
Sse9I	AATT	4 cut(s)	25, 61, 201, 283
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	305, 330
StyI	CCWWGG	2 cut(s)	218, 351
TaaI	ACNGT	2 cut(s)	143, 393
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	1 cut(s)	469
TasI	AATT	4 cut(s)	25, 61, 201, 283
TauI	GCSGC	1 cut(s)	293
TfiI	GAWTC	2 cut(s)	74, 101
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	337
Tsp45I	GTSAC	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	241, 360
TspRI	CASTG	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	378
VspI	ATTAAT	1 cut(s)	282
XapI	RAATTY	1 cut(s)	61
XcmI	CCANNNNNNNNNTGG	1 cut(s)	253
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	314
ZraI	GACGTC	1 cut(s)	45
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.