Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Forward (+)

11667541 .. 11671336

Gene Structure 3796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCGGAGCACTTGGCATCGATCTTCGGCACAGAGAAGGACAGGGTGAACTGCCCCTTCTACTTCAAGATCGGCGCGTGCCGTCACGGCGACCGCTGCTCTCGCCTTCACACCAAGCCCAGCATCAGCCCAACTCTCCTCCTCTCCAACATGTACCAGCGCCCCGATATGCTCACCAACCCCGGCGTCGACCCTCAGGGCCAGGCCCTCGACCCTCGCAAGATCCAAGACAACTTCGAGGATTTCTATGAGGATCTGTTTGAGGAGCTGAGCAAGTATGGGCAGATCGAGAGCTTGAATATCTGTGACAATTTGGCTGACCACATGGTAGGAAATGTGTATGTTCAGTTCAGGGAGGAGGAGCACGCTGCCGCTGCGCTTCAGAATCTCACTGGGAGGTTCTATGCAGGTCGCCCCATCATTGTTGACTTTTCACCGGTGACCGACTTCCGTGAAGCTACATGTAGGCAGTATGAAGAAAATGTATGCAATCGAGGTGGCTATTGCAATTTCATGCATTTGAAGAAGATTAGCAGGGAATTGAGGAGGCGATTATTCGGAAGAAACAGGCGAAGGCGGAGCCGCAGTCGCAGCAGAAGCCATAGTCCTCAAAAGCATCCGCGCGGTGGTTATCAGGAGCGTCCACATGGAGGTCGGGGTTTTGGCAGAAGAGGAGATGATGAGAGAGATCGTTTCAATGATAAAAACAGGAGGCCTAGAAGCCGTAGTCCTGGTGGACGTAGAGGAAGAAGTAGAAGCCCTGTGGGTAGAAGGAATAGGAGTCCTGCAGCCAGGGAAAGCAGTGCTGAAAGAAGGGCTAAGATTGAGCAATGGAACCGGGAAAAGGAGCAGGTTGATTCTGGAGATAAGCATGATAACAATAATAATAACAGCAACAATAATGATGAGGAATGGAATGGTGATAATAATAATGATCAGTACTACGATCCTCAGCAGCAGCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

323

Amino Acids

37.62

Weight (kDa)

9.5

Isoelectric Point (pI)

77.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 37	2.4e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1	PF00076	84 - 140	2.6e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	398, 841
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	3 cut(s)	77, 622, 624
AciI	CCGC	7 cut(s)	5, 94, 372, 577, 583, 620, 624
AclWI	GGATC	3 cut(s)	217, 261, 941
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	155, 941
AfiI	CCNNNNNNNGG	3 cut(s)	626, 650, 844
AflIII	ACRYGT	2 cut(s)	150, 461
AgeI	ACCGGT	1 cut(s)	436
AgsI	TTSAA	4 cut(s)	67, 298, 523, 697
AjnI	CCWGG	3 cut(s)	201, 730, 791
AluBI	AGCT	3 cut(s)	268, 294, 458
AluI	AGCT	3 cut(s)	268, 294, 458
Alw21I	GWGCWC	2 cut(s)	12, 366
AlwI	GGATC	3 cut(s)	217, 261, 941
AoxI	GGCC	3 cut(s)	199, 204, 713
ApeKI	GCWGC	8 cut(s)	96, 368, 374, 591, 788, 955, 958, 961
AsiGI	ACCGGT	1 cut(s)	436
AspLEI	GCGC	4 cut(s)	77, 162, 379, 624
AspS9I	GGNCC	2 cut(s)	199, 205
AsuC2I	CCSGG	2 cut(s)	183, 839
AsuHPI	GGTGA	5 cut(s)	58, 166, 426, 451, 932
AxyI	CCTNAGG	1 cut(s)	195
Bbv12I	GWGCWC	2 cut(s)	12, 366
BbvCI	CCTCAGC	1 cut(s)	951
BbvI	GCAGC	5 cut(s)	83, 355, 361, 603, 800
BccI	CCATC	1 cut(s)	425
BceAI	ACGGC	3 cut(s)	66, 103, 708
BciT130I	CCWGG	3 cut(s)	203, 732, 793
BclI	TGATCA	1 cut(s)	934
BcnI	CCSGG	2 cut(s)	183, 839
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	1 cut(s)	786
BfoI	RGCGCY	1 cut(s)	163
BfuAI	ACCTGC	2 cut(s)	398, 841
BglI	GCCNNNNNGGC	1 cut(s)	87
BlpI	GCTNAGC	1 cut(s)	269
BmcAI	AGTACT	1 cut(s)	941
Bme1390I	CCNGG	5 cut(s)	183, 203, 732, 793, 839
BmgT120I	GGNCC	2 cut(s)	199, 205
BmiI	GGNNCC	2 cut(s)	581, 836
BmrFI	CCNGG	5 cut(s)	183, 203, 732, 793, 839
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	26, 132, 625
BmuI	ACTGGG	1 cut(s)	402
BpmI	CTGGAG	1 cut(s)	882
Bpu10I	CCTNAGC	1 cut(s)	951
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuMI	CCSGG	2 cut(s)	183, 839
Bsa29I	ATCGAT	1 cut(s)	20
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	2 cut(s)	181, 792
BsaWI	WCCGGW	1 cut(s)	436
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	626, 650, 844
Bse118I	RCCGGY	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	397
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	836
BseBI	CCWGG	3 cut(s)	203, 732, 793
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	2 cut(s)	181, 792
BseGI	GGATG	1 cut(s)	616
BseLI	CCNNNNNNNGG	3 cut(s)	626, 650, 844
BseMI	GCAATG	1 cut(s)	836
BseMII	CTCAG	3 cut(s)	209, 260, 965
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	7 cut(s)	128, 131, 278, 371, 374, 559, 687
BseXI	GCAGC	5 cut(s)	83, 355, 361, 603, 800
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	3 cut(s)	77, 622, 624
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	3 cut(s)	201, 206, 715
BshTI	ACCGGT	1 cut(s)	436
BshVI	ATCGAT	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	2 cut(s)	12, 366
BsiSI	CCGG	3 cut(s)	183, 437, 838
BslI	CCNNNNNNNGG	3 cut(s)	626, 650, 844
BsnI	GGCC	3 cut(s)	201, 206, 715
Bsp1286I	GDGCHC	2 cut(s)	12, 366
Bsp143I	GATC	8 cut(s)	21, 69, 222, 253, 285, 688, 934, 946
Bsp1720I	GCTNAGC	1 cut(s)	269
BspACI	CCGC	7 cut(s)	5, 94, 372, 577, 583, 620, 624
BspANI	GGCC	3 cut(s)	201, 206, 715
BspCNI	CTCAG	3 cut(s)	208, 261, 964
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	3 cut(s)	77, 622, 624
BspLI	GGNNCC	2 cut(s)	581, 836
BspMAI	CTGCAG	1 cut(s)	790
BspMI	ACCTGC	2 cut(s)	398, 841
BspPI	GGATC	3 cut(s)	217, 261, 941
BsrDI	GCAATG	1 cut(s)	836
BsrFI	RCCGGY	1 cut(s)	436
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	436
BssECI	CCNNGG	2 cut(s)	181, 792
BssMI	GATC	8 cut(s)	21, 69, 222, 253, 285, 688, 934, 946
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	3 cut(s)	203, 732, 793
Bst6I	CTCTTC	1 cut(s)	664
BstACI	GRCGYC	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	79, 366
BstDEI	CTNAG	4 cut(s)	195, 269, 819, 951
BstEII	GGTNACC	1 cut(s)	439
BstF5I	GGATG	1 cut(s)	616
BstFNI	CGCG	3 cut(s)	77, 622, 624
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	4 cut(s)	77, 162, 379, 624
BstKTI	GATC	8 cut(s)	24, 72, 225, 256, 288, 691, 937, 949
BstMBI	GATC	8 cut(s)	21, 69, 222, 253, 285, 688, 934, 946
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	8 cut(s)	87, 96, 102, 374, 588, 591, 597, 961
BstNI	CCWGG	3 cut(s)	203, 732, 793
BstNSI	RCATGY	2 cut(s)	154, 465
BstPI	GGTNACC	1 cut(s)	439
BstSCI	CCNGG	5 cut(s)	181, 201, 730, 791, 837
BstSFI	CTRYAG	1 cut(s)	786
BstUI	CGCG	3 cut(s)	77, 622, 624
BstV1I	GCAGC	5 cut(s)	83, 355, 361, 603, 800
BstX2I	RGATCY	2 cut(s)	222, 253
BstYI	RGATCY	2 cut(s)	222, 253
Bsu15I	ATCGAT	1 cut(s)	20
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	201, 206, 715
BsuTUI	ATCGAT	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	616
BtsI	GCAGTG	1 cut(s)	808
BtsIMutI	CAGTG	2 cut(s)	390, 808
BveI	ACCTGC	2 cut(s)	398, 841
Cac8I	GCNNGC	2 cut(s)	79, 366
CfoI	GCGC	4 cut(s)	77, 162, 379, 624
Cfr10I	RCCGGY	1 cut(s)	436
Cfr13I	GGNCC	2 cut(s)	199, 205
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	2 cut(s)	175, 629
Csp6I	GTAC	2 cut(s)	154, 940
CspAI	ACCGGT	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	6 cut(s)	151, 325, 462, 514, 647, 872
CviQI	GTAC	2 cut(s)	154, 940
DdeI	CTNAG	4 cut(s)	195, 269, 819, 951
DpnI	GATC	8 cut(s)	23, 71, 224, 255, 287, 690, 936, 948
DpnII	GATC	8 cut(s)	21, 69, 222, 253, 285, 688, 934, 946
Eam1104I	CTCTTC	1 cut(s)	664
EarI	CTCTTC	1 cut(s)	664
EciI	GGCGGA	2 cut(s)	20, 592
Eco147I	AGGCCT	1 cut(s)	715
Eco57I	CTGAAG	1 cut(s)	365
Eco81I	CCTNAGG	1 cut(s)	195
Eco91I	GGTNACC	1 cut(s)	439
EcoO109I	RGGNCCY	1 cut(s)	205
EcoO65I	GGTNACC	1 cut(s)	439
EcoRII	CCWGG	3 cut(s)	201, 730, 791
EcoT22I	ATGCAT	1 cut(s)	519
FaeI	CATG	6 cut(s)	154, 328, 465, 517, 650, 875
FatI	CATG	6 cut(s)	150, 324, 461, 513, 646, 871
FbaI	TGATCA	1 cut(s)	934
FblI	GTMKAC	1 cut(s)	189
FokI	GGATG	1 cut(s)	603
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	4 cut(s)	76, 161, 378, 623
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	882
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	3 cut(s)	201, 206, 715
HapII	CCGG	3 cut(s)	183, 437, 838
HgaI	GACGC	2 cut(s)	175, 629
HhaI	GCGC	4 cut(s)	77, 162, 379, 624
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	6 cut(s)	154, 328, 465, 517, 650, 875
Hin6I	GCGC	4 cut(s)	75, 160, 377, 622
HinP1I	GCGC	4 cut(s)	75, 160, 377, 622
HincII	GTYRAC	2 cut(s)	190, 427
HindII	GTYRAC	2 cut(s)	190, 427
HinfI	GANTC	3 cut(s)	385, 781, 857
HpaII	CCGG	3 cut(s)	183, 437, 838
HphI	GGTGA	5 cut(s)	58, 166, 426, 451, 932
Hpy166II	GTNNAC	5 cut(s)	49, 190, 427, 644, 737
Hpy188I	TCNGA	2 cut(s)	384, 560
Hpy188III	TCNNGA	4 cut(s)	67, 289, 635, 861
Hpy8I	GTNNAC	5 cut(s)	49, 190, 427, 644, 737
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	6 cut(s)	31, 67, 116, 567, 765, 807
HpyCH4IV	ACGT	1 cut(s)	739
HpyCH4V	TGCA	5 cut(s)	407, 489, 507, 517, 788
HpyF10VI	GCNNNNNNNGC	8 cut(s)	87, 96, 102, 374, 588, 591, 597, 961
HpyF3I	CTNAG	4 cut(s)	195, 269, 819, 951
HpySE526I	ACGT	1 cut(s)	739
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	6 cut(s)	154, 328, 465, 517, 650, 875
HspAI	GCGC	4 cut(s)	75, 160, 377, 622
Ksp22I	TGATCA	1 cut(s)	934
Kzo9I	GATC	8 cut(s)	21, 69, 222, 253, 285, 688, 934, 946
LmnI	GCTCC	6 cut(s)	7, 265, 361, 579, 637, 847
Lsp1109I	GCAGC	5 cut(s)	83, 355, 361, 603, 800
LweI	GCATC	3 cut(s)	26, 132, 625
MaeI	CTAG	1 cut(s)	717
MaeII	ACGT	1 cut(s)	739
MaeIII	GTNAC	3 cut(s)	83, 305, 439
MalI	GATC	8 cut(s)	23, 71, 224, 255, 287, 690, 936, 948
MboI	GATC	8 cut(s)	21, 69, 222, 253, 285, 688, 934, 946
MboII	GAAGA	7 cut(s)	16, 488, 535, 538, 573, 681, 759
MflI	RGATCY	2 cut(s)	222, 253
MhlI	GDGCHC	2 cut(s)	12, 366
MluCI	AATT	3 cut(s)	310, 508, 539
MlyI	GAGTC	1 cut(s)	790
MmeI	TCCRAC	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	519
MspA1I	CMGCKG	2 cut(s)	96, 374
MspI	CCGG	3 cut(s)	183, 437, 838
MspR9I	CCNGG	5 cut(s)	183, 203, 732, 793, 839
MvaI	CCWGG	3 cut(s)	203, 732, 793
MvnI	CGCG	3 cut(s)	77, 622, 624
MwoI	GCNNNNNNNGC	8 cut(s)	87, 96, 102, 374, 588, 591, 597, 961
NciI	CCSGG	2 cut(s)	183, 839
NdeII	GATC	8 cut(s)	21, 69, 222, 253, 285, 688, 934, 946
NlaIII	CATG	6 cut(s)	154, 328, 465, 517, 650, 875
NlaIV	GGNNCC	2 cut(s)	581, 836
NmuCI	GTSAC	3 cut(s)	83, 305, 439
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	2 cut(s)	154, 465
PceI	AGGCCT	1 cut(s)	715
PciI	ACATGT	2 cut(s)	150, 461
PfeI	GAWTC	2 cut(s)	385, 857
PinAI	ACCGGT	1 cut(s)	436
PleI	GAGTC	1 cut(s)	789
PpsI	GAGTC	1 cut(s)	789
PscI	ACATGT	2 cut(s)	150, 461
Psp6I	CCWGG	3 cut(s)	201, 730, 791
PspEI	GGTNACC	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	3 cut(s)	201, 730, 791
PspN4I	GGNNCC	2 cut(s)	581, 836
PspPI	GGNCC	2 cut(s)	199, 205
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
PstI	CTGCAG	1 cut(s)	790
PsuI	RGATCY	2 cut(s)	222, 253
RsaI	GTAC	2 cut(s)	155, 941
RsaNI	GTAC	2 cut(s)	154, 940
SalI	GTCGAC	1 cut(s)	188
Sau3AI	GATC	8 cut(s)	21, 69, 222, 253, 285, 688, 934, 946
Sau96I	GGNCC	2 cut(s)	199, 205
ScaI	AGTACT	1 cut(s)	941
SchI	GAGTC	1 cut(s)	790
ScrFI	CCNGG	5 cut(s)	183, 203, 732, 793, 839
SduI	GDGCHC	2 cut(s)	12, 366
SetI	ASST	9 cut(s)	270, 296, 401, 412, 460, 499, 655, 742, 855
SfaNI	GCATC	3 cut(s)	26, 132, 625
SfcI	CTRYAG	1 cut(s)	786
SgrAI	CRCCGGYG	1 cut(s)	436
Sse9I	AATT	3 cut(s)	310, 508, 539
SseBI	AGGCCT	1 cut(s)	715
SsiI	CCGC	7 cut(s)	5, 94, 372, 577, 583, 620, 624
SspMI	CTAG	1 cut(s)	717
StuI	AGGCCT	1 cut(s)	715
StyD4I	CCNGG	5 cut(s)	181, 201, 730, 791, 837
TaiI	ACGT	1 cut(s)	742
TaqI	TCGA	6 cut(s)	20, 189, 210, 237, 288, 493
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	3 cut(s)	310, 508, 539
TatI	WGTACW	1 cut(s)	939
TauI	GCSGC	2 cut(s)	374, 585
TfiI	GAWTC	2 cut(s)	385, 857
TscAI	CASTG	2 cut(s)	397, 808
TseFI	GTSAC	3 cut(s)	83, 305, 439
TseI	GCWGC	8 cut(s)	96, 368, 374, 591, 788, 955, 958, 961
Tsp45I	GTSAC	3 cut(s)	83, 305, 439
TspDTI	ATGAA	2 cut(s)	489, 502
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	2 cut(s)	397, 808
XceI	RCATGY	2 cut(s)	154, 465
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	717
ZrmI	AGTACT	1 cut(s)	941
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.