Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Forward (+)

1652891 .. 1655993

Gene Structure 3103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1016800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCGGAGCACTTAGCATCCATCTTCGGCACCGAGAAGGACCGCGTCAACTGCCCCTTCTACTTCAAGATCGGAGCTTGCCGGCACGGCGACCGCTGCTCCCGCCTCCACACCAAGCCCAGCATCAGCCCCACCCTCCTCCTCTCCAACATGTACCAGCACCCTGATATGCTCACCAACCCCGGCGTCGACCCCCAGGGCCAAGCCATCGATCCCCGCAAGATCCAGGACAACTTCGAGGATTTTTATGAGGATCTGTTTGAGGAGCTGAGTAAGTACGGACAAATCGAGAGCTTGAATATCTGTGACAATTTGGCTGATCACATGGTTGGTAATGTGTACGTTCAGTTCAGGGAGGAAGAACATGCTCAAGCTGCGCTTCAGAATCTCACTGGGAGGTTCTATGCAGGGCGTCCCATCATCGTTGACTTTTCCCCGGTGACGGATTTTCGTGAAGCTACCTGTAGGCAGTATGAAGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTCATGCACTTGAAGAAAATTAGCAGGGAGTTGAGGAGGCGGTTATTTGGGAGAAACAAGCGAAGGCATAGTCGCAGTCGAAGCAGAAGCCGCAGTCCTCAAAGGCATCATCGTGGTGGTTATCAGGAGCGCCCACATGGAGGTCGTGGTTTCGGTAGAAGAGGAGAAGATGAGAGAGATCATCGTTTCAATGATAAAAGCAGGAGGCCTAGAAGCCGCAGTCCTGGGCGTAGAGGAAGAAGTAGAAGCCCTGTGGGCTCTGGGCGAAGGAGGAGTCCTCCAGCCAGAGAAAGTAGTGCCGAAAGAAGGGCTAAGATCGAACAATGGAACAAGGAGAGGGAAAAGGTGGATTCTGGAAATAAGTATGATGACAATAATAACAGCAACAATCATGATGATCAATGGGATGGTTCTGCAGAGAACAATGATCAGTACTTCGACGACCCTCAGCAGCACCAACACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

326

Amino Acids

38.08

Weight (kDa)

9.48

Isoelectric Point (pI)

77.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCCH	PF00642	14 - 37	2.5e-07	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
RRM_1	PF00076	84 - 140	1.5e-07	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	45
AciI	CCGC	8 cut(s)	5, 43, 94, 103, 217, 550, 601, 727
AclWI	GGATC	3 cut(s)	206, 217, 261
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	2 cut(s)	186, 412
AfaI	GTAC	4 cut(s)	155, 278, 341, 944
AfiI	CCNNNNNNNGG	3 cut(s)	442, 650, 816
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	4 cut(s)	67, 298, 523, 700
AjnI	CCWGG	3 cut(s)	195, 225, 733
AluBI	AGCT	5 cut(s)	77, 268, 294, 374, 458
AluI	AGCT	5 cut(s)	77, 268, 294, 374, 458
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	206, 217, 261
AoxI	GGCC	2 cut(s)	199, 716
ApeKI	GCWGC	3 cut(s)	96, 374, 961
ArsI	GACNNNNNNTTYG	4 cut(s)	565, 597, 769, 801
AspLEI	GCGC	2 cut(s)	379, 642
AspS9I	GGNCC	2 cut(s)	40, 199
AsuC2I	CCSGG	2 cut(s)	183, 437
AsuHPI	GGTGA	2 cut(s)	166, 451
AvaII	GGWCC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	770
Bbv12I	GWGCWC	1 cut(s)	12
BbvCI	CCTCAGC	1 cut(s)	957
BbvI	GCAGC	3 cut(s)	83, 361, 973
BccI	CCATC	4 cut(s)	29, 215, 425, 911
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	3 cut(s)	197, 227, 735
BclI	TGATCA	3 cut(s)	319, 907, 937
BcnI	CCSGG	2 cut(s)	183, 437
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	2 cut(s)	463, 924
BfoI	RGCGCY	1 cut(s)	643
BglI	GCCNNNNNGGC	2 cut(s)	87, 765
BisI	GCNGC	5 cut(s)	97, 375, 601, 727, 962
BlsI	GCNGC	5 cut(s)	98, 376, 602, 728, 963
BmcAI	AGTACT	1 cut(s)	944
Bme1390I	CCNGG	5 cut(s)	183, 197, 227, 437, 735
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	2 cut(s)	40, 199
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	5 cut(s)	183, 197, 227, 437, 735
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	26, 132, 625
BmuI	ACTGGG	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
BpmI	CTGGAG	1 cut(s)	774
Bpu10I	CCTNAGC	1 cut(s)	957
BpuEI	CTTGAG	1 cut(s)	354
BpuMI	CCSGG	2 cut(s)	183, 437
Bsa29I	ATCGAT	1 cut(s)	210
BsaHI	GRCGYC	2 cut(s)	186, 412
BsaJI	CCNNGG	5 cut(s)	181, 195, 196, 435, 734
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	3 cut(s)	442, 650, 816
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	3 cut(s)	197, 227, 735
BseCI	ATCGAT	1 cut(s)	210
BseDI	CCNNGG	5 cut(s)	181, 195, 196, 435, 734
BseGI	GGATG	2 cut(s)	17, 922
BseLI	CCNNNNNNNGG	3 cut(s)	442, 650, 816
BseMII	CTCAG	2 cut(s)	260, 971
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	6 cut(s)	128, 131, 278, 559, 687, 796
BseXI	GCAGC	3 cut(s)	83, 361, 973
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	201, 718
BshNI	GGYRCC	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	210
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	3 cut(s)	82, 183, 437
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	3 cut(s)	442, 650, 816
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	2 cut(s)	201, 718
Bsp1286I	GDGCHC	2 cut(s)	12, 770
Bsp143I	GATC	9 cut(s)	69, 211, 222, 253, 319, 688, 825, 907, 937
BspACI	CCGC	8 cut(s)	5, 43, 94, 103, 217, 550, 601, 727
BspANI	GGCC	2 cut(s)	201, 718
BspCNI	CTCAG	2 cut(s)	261, 970
BspDI	ATCGAT	1 cut(s)	210
BspFNI	CGCG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	901
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	928
BspPI	GGATC	3 cut(s)	206, 217, 261
BspT107I	GGYRCC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	5 cut(s)	181, 195, 196, 435, 734
BssMI	GATC	9 cut(s)	69, 211, 222, 253, 319, 688, 825, 907, 937
BssNI	GRCGYC	2 cut(s)	186, 412
Bst2UI	CCWGG	3 cut(s)	197, 227, 735
Bst6I	CTCTTC	1 cut(s)	664
BstACI	GRCGYC	2 cut(s)	186, 412
BstC8I	GCNNGC	2 cut(s)	79, 83
BstDEI	CTNAG	4 cut(s)	13, 269, 822, 957
BstF5I	GGATG	2 cut(s)	17, 922
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	643
BstHHI	GCGC	2 cut(s)	379, 642
BstKTI	GATC	9 cut(s)	72, 214, 225, 256, 322, 691, 828, 910, 940
BstMBI	GATC	9 cut(s)	69, 211, 222, 253, 319, 688, 825, 907, 937
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	8 cut(s)	51, 87, 96, 102, 374, 591, 600, 765
BstNI	CCWGG	3 cut(s)	197, 227, 735
BstNSI	RCATGY	2 cut(s)	154, 368
BstSCI	CCNGG	5 cut(s)	181, 195, 225, 435, 733
BstSFI	CTRYAG	2 cut(s)	463, 924
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	83, 361, 973
BstX2I	RGATCY	2 cut(s)	222, 253
BstYI	RGATCY	2 cut(s)	222, 253
Bsu15I	ATCGAT	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	201, 718
BsuTUI	ATCGAT	1 cut(s)	210
BtsCI	GGATG	2 cut(s)	17, 922
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	79, 83
CciI	TCATGA	1 cut(s)	901
CfoI	GCGC	2 cut(s)	379, 642
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	40, 199
ClaI	ATCGAT	1 cut(s)	210
CseI	GACGC	3 cut(s)	34, 175, 401
Csp6I	GTAC	4 cut(s)	154, 277, 340, 943
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	6 cut(s)	151, 325, 365, 514, 647, 902
CviQI	GTAC	4 cut(s)	154, 277, 340, 943
DdeI	CTNAG	4 cut(s)	13, 269, 822, 957
DpnI	GATC	9 cut(s)	71, 213, 224, 255, 321, 690, 827, 909, 939
DpnII	GATC	9 cut(s)	69, 211, 222, 253, 319, 688, 825, 907, 937
Eam1104I	CTCTTC	1 cut(s)	664
EarI	CTCTTC	1 cut(s)	664
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	718
Eco24I	GRGCYC	1 cut(s)	770
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	3 cut(s)	195, 225, 733
EcoT38I	GRGCYC	1 cut(s)	770
FaeI	CATG	6 cut(s)	154, 328, 368, 517, 650, 905
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	6 cut(s)	150, 324, 364, 513, 646, 901
FauI	CCCGC	2 cut(s)	110, 224
FbaI	TGATCA	3 cut(s)	319, 907, 937
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	5 cut(s)	97, 375, 601, 727, 962
FokI	GGATG	2 cut(s)	4, 929
FriOI	GRGCYC	1 cut(s)	770
Fsp4HI	GCNGC	5 cut(s)	97, 375, 601, 727, 962
FspBI	CTAG	1 cut(s)	720
GlaI	GCGC	2 cut(s)	378, 641
GluI	GCNGC	5 cut(s)	97, 375, 601, 727, 962
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	774
HaeII	RGCGCY	1 cut(s)	643
HaeIII	GGCC	2 cut(s)	201, 718
HapII	CCGG	3 cut(s)	82, 183, 437
HgaI	GACGC	3 cut(s)	34, 175, 401
HhaI	GCGC	2 cut(s)	379, 642
Hin1I	GRCGYC	2 cut(s)	186, 412
Hin1II	CATG	6 cut(s)	154, 328, 368, 517, 650, 905
Hin6I	GCGC	2 cut(s)	377, 640
HinP1I	GCGC	2 cut(s)	377, 640
HincII	GTYRAC	3 cut(s)	49, 190, 427
HindII	GTYRAC	3 cut(s)	49, 190, 427
HinfI	GANTC	3 cut(s)	385, 784, 860
HpaII	CCGG	3 cut(s)	82, 183, 437
HphI	GGTGA	2 cut(s)	166, 451
Hpy166II	GTNNAC	4 cut(s)	49, 190, 340, 427
Hpy188I	TCNGA	2 cut(s)	74, 384
Hpy188III	TCNNGA	6 cut(s)	67, 289, 452, 635, 864, 902
Hpy8I	GTNNAC	4 cut(s)	49, 190, 340, 427
Hpy99I	CGWCG	2 cut(s)	191, 953
HpyAV	CCTTC	5 cut(s)	31, 67, 567, 771, 810
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	5 cut(s)	407, 489, 507, 517, 926
HpyF10VI	GCNNNNNNNGC	8 cut(s)	51, 87, 96, 102, 374, 591, 600, 765
HpyF3I	CTNAG	4 cut(s)	13, 269, 822, 957
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	2 cut(s)	186, 412
Hsp92II	CATG	6 cut(s)	154, 328, 368, 517, 650, 905
HspAI	GCGC	2 cut(s)	377, 640
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Ksp22I	TGATCA	3 cut(s)	319, 907, 937
Kzo9I	GATC	9 cut(s)	69, 211, 222, 253, 319, 688, 825, 907, 937
LmnI	GCTCC	5 cut(s)	7, 74, 104, 265, 637
Lsp1109I	GCAGC	3 cut(s)	83, 361, 973
LweI	GCATC	3 cut(s)	26, 132, 625
MaeI	CTAG	1 cut(s)	720
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	2 cut(s)	305, 439
MalI	GATC	9 cut(s)	71, 213, 224, 255, 321, 690, 827, 909, 939
MboI	GATC	9 cut(s)	69, 211, 222, 253, 319, 688, 825, 907, 937
MboII	GAAGA	7 cut(s)	16, 371, 488, 535, 681, 689, 759
MflI	RGATCY	2 cut(s)	222, 253
MhlI	GDGCHC	2 cut(s)	12, 770
MluCI	AATT	2 cut(s)	310, 528
MlyI	GAGTC	1 cut(s)	793
MmeI	TCCRAC	1 cut(s)	171
MroNI	GCCGGC	1 cut(s)	81
MslI	CAYNNNNRTG	2 cut(s)	621, 624
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	3 cut(s)	82, 183, 437
MspR9I	CCNGG	5 cut(s)	183, 197, 227, 437, 735
MvaI	CCWGG	3 cut(s)	197, 227, 735
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	8 cut(s)	51, 87, 96, 102, 374, 591, 600, 765
NaeI	GCCGGC	1 cut(s)	83
NciI	CCSGG	2 cut(s)	183, 437
NdeII	GATC	9 cut(s)	69, 211, 222, 253, 319, 688, 825, 907, 937
NgoMIV	GCCGGC	1 cut(s)	81
NlaIII	CATG	6 cut(s)	154, 328, 368, 517, 650, 905
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	305, 439
NspI	RCATGY	2 cut(s)	154, 368
PagI	TCATGA	1 cut(s)	901
PasI	CCCWGGG	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	718
PciI	ACATGT	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	2 cut(s)	385, 860
PflFI	GACNNNGTC	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	5 cut(s)	98, 376, 602, 728, 963
PleI	GAGTC	1 cut(s)	792
PpsI	GAGTC	1 cut(s)	792
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	3 cut(s)	195, 225, 733
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	3 cut(s)	195, 225, 733
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	2 cut(s)	40, 199
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
PstI	CTGCAG	1 cut(s)	928
PsuI	RGATCY	2 cut(s)	222, 253
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	4 cut(s)	155, 278, 341, 944
RsaNI	GTAC	4 cut(s)	154, 277, 340, 943
RseI	CAYNNNNRTG	2 cut(s)	621, 624
SalI	GTCGAC	1 cut(s)	188
SatI	GCNGC	5 cut(s)	97, 375, 601, 727, 962
Sau3AI	GATC	9 cut(s)	69, 211, 222, 253, 319, 688, 825, 907, 937
Sau96I	GGNCC	2 cut(s)	40, 199
ScaI	AGTACT	1 cut(s)	944
SchI	GAGTC	1 cut(s)	793
ScrFI	CCNGG	5 cut(s)	183, 197, 227, 437, 735
SduI	GDGCHC	2 cut(s)	12, 770
SfaNI	GCATC	3 cut(s)	26, 132, 625
SfcI	CTRYAG	2 cut(s)	463, 924
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	2 cut(s)	621, 624
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	310, 528
SseBI	AGGCCT	1 cut(s)	718
SsiI	CCGC	8 cut(s)	5, 43, 94, 103, 217, 550, 601, 727
SspMI	CTAG	1 cut(s)	720
StuI	AGGCCT	1 cut(s)	718
StyD4I	CCNGG	5 cut(s)	181, 195, 225, 435, 733
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	8 cut(s)	189, 210, 237, 288, 493, 589, 828, 948
TasI	AATT	2 cut(s)	310, 528
TatI	WGTACW	1 cut(s)	942
TauI	GCSGC	2 cut(s)	603, 729
TfiI	GAWTC	2 cut(s)	385, 860
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	305, 439
TseI	GCWGC	3 cut(s)	96, 374, 961
Tsp45I	GTSAC	2 cut(s)	305, 439
TspDTI	ATGAA	2 cut(s)	489, 502
TspGWI	ACGGA	2 cut(s)	294, 458
TspRI	CASTG	1 cut(s)	397
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	40
XceI	RCATGY	2 cut(s)	154, 368
XmiI	GTMKAC	1 cut(s)	189
XspI	CTAG	1 cut(s)	720
ZrmI	AGTACT	1 cut(s)	944

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.