Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002532.1

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Forward (+)

35432 .. 36096

Gene Structure 665 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002532.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgttgaacatactagggcgccccatcattgttgacttttcaccagtgaccgacttccgtgaagcgacatgtaggcagtatgaagaaaatgtatgcaatcgaggtggctactgcaatttcatgcatttgaagaagattagcagggaattgaggaggcgattatttggaagaaacaggcgaaggcggagccgcagtcgcagcagaagccatagtcctcaaaagcatcagcgtggtggttatcaggagcgtccacacggaggtcgtggttttggcagaagaggaggagatgatgagagagatcgtttcaatgataaaaacaggaggcctagaagccgtagtcctggtggacgtagaggaagaagtagaagccctgtggggagaaggaataggagtcctccagccagggaaagcagtgctgaaagaagggccaagattgagcaatggaacagggaaaaggaacaggttgattctggagataagcatgataacaataataataacagcaacaataatgatgatgaatggaatggtgataataatagtgatcagtactatgatcctcagcagcagcaacagcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

193

Amino Acids

22.88

Weight (kDa)

11.07

Isoelectric Point (pI)

103.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	18
AciI	CCGC	2 cut(s)	184, 190
AclWI	GGATC	1 cut(s)	551
AcyI	GRCGYC	1 cut(s)	19
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	68
AgsI	TTSAA	3 cut(s)	7, 130, 307
AjnI	CCWGG	2 cut(s)	340, 401
AlwI	GGATC	1 cut(s)	551
AoxI	GGCC	2 cut(s)	323, 426
ApeKI	GCWGC	3 cut(s)	198, 565, 568
AspLEI	GCGC	1 cut(s)	21
AspS9I	GGNCC	1 cut(s)	426
AsuHPI	GGTGA	2 cut(s)	33, 542
BanI	GGYRCC	1 cut(s)	18
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	2 cut(s)	210, 577
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	1 cut(s)	318
BciT130I	CCWGG	2 cut(s)	342, 403
BclI	TGATCA	1 cut(s)	544
BfaI	CTAG	2 cut(s)	14, 327
BfoI	RGCGCY	1 cut(s)	22
BisI	GCNGC	4 cut(s)	190, 199, 566, 569
BlsI	GCNGC	4 cut(s)	191, 200, 567, 570
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	2 cut(s)	342, 403
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	20, 188
BmrFI	CCNGG	2 cut(s)	342, 403
BmsI	GCATC	1 cut(s)	232
BpmI	CTGGAG	2 cut(s)	381, 492
Bpu10I	CCTNAGC	1 cut(s)	561
BsaHI	GRCGYC	1 cut(s)	19
BsaJI	CCNNGG	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse1I	ACTGG	1 cut(s)	44
Bse3DI	GCAATG	1 cut(s)	446
BseBI	CCWGG	2 cut(s)	342, 403
BseDI	CCNNGG	1 cut(s)	402
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseMI	GCAATG	1 cut(s)	446
BseMII	CTCAG	1 cut(s)	575
BseNI	ACTGG	1 cut(s)	44
BseRI	GAGGAG	3 cut(s)	166, 294, 297
BseXI	GCAGC	2 cut(s)	210, 577
BshFI	GGCC	2 cut(s)	325, 428
BshNI	GGYRCC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	257
BsnI	GGCC	2 cut(s)	325, 428
Bsp143I	GATC	3 cut(s)	298, 544, 556
BspACI	CCGC	2 cut(s)	184, 190
BspANI	GGCC	2 cut(s)	325, 428
BspCNI	CTCAG	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	20, 188
BspPI	GGATC	1 cut(s)	551
BspT107I	GGYRCC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	3 cut(s)	298, 544, 556
BssNI	GRCGYC	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	342, 403
Bst6I	CTCTTC	1 cut(s)	271
BstACI	GRCGYC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	561
BstH2I	RGCGCY	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	21
BstKTI	GATC	3 cut(s)	301, 547, 559
BstMBI	GATC	3 cut(s)	298, 544, 556
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 198, 204, 574
BstNI	CCWGG	2 cut(s)	342, 403
BstNSI	RCATGY	1 cut(s)	72
BstSCI	CCNGG	2 cut(s)	340, 401
BstV1I	GCAGC	2 cut(s)	210, 577
BsuRI	GGCC	2 cut(s)	325, 428
BtsI	GCAGTG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	51, 418
CfoI	GCGC	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	426
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	550
CspCI	CAANNNNNGTGG	2 cut(s)	85, 120
CviAII	CATG	3 cut(s)	69, 121, 482
CviJI	RGCY	8 cut(s)	108, 189, 207, 325, 333, 369, 401, 428
CviKI_1	RGCY	8 cut(s)	108, 189, 207, 325, 333, 369, 401, 428
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	561
DinI	GGCGCC	1 cut(s)	20
DpnI	GATC	3 cut(s)	300, 546, 558
DpnII	GATC	3 cut(s)	298, 544, 556
Eam1104I	CTCTTC	1 cut(s)	271
EarI	CTCTTC	1 cut(s)	271
EciI	GGCGGA	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	325
EcoRII	CCWGG	2 cut(s)	340, 401
EcoT22I	ATGCAT	1 cut(s)	126
EgeI	GGCGCC	1 cut(s)	20
EheI	GGCGCC	1 cut(s)	20
FaeI	CATG	3 cut(s)	72, 124, 485
FaiI	YATR	8 cut(s)	11, 70, 81, 94, 122, 210, 483, 555
FatI	CATG	3 cut(s)	68, 120, 481
FbaI	TGATCA	1 cut(s)	544
Fnu4HI	GCNGC	4 cut(s)	190, 199, 566, 569
Fsp4HI	GCNGC	4 cut(s)	190, 199, 566, 569
FspBI	CTAG	2 cut(s)	14, 327
GlaI	GCGC	1 cut(s)	20
GluI	GCNGC	4 cut(s)	190, 199, 566, 569
GsuI	CTGGAG	2 cut(s)	381, 492
HaeII	RGCGCY	1 cut(s)	22
HaeIII	GGCC	2 cut(s)	325, 428
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	72, 124, 485
Hin6I	GCGC	1 cut(s)	19
HinP1I	GCGC	1 cut(s)	19
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	391, 467
HphI	GGTGA	2 cut(s)	33, 542
Hpy166II	GTNNAC	3 cut(s)	34, 251, 347
Hpy188III	TCNNGA	2 cut(s)	242, 471
Hpy8I	GTNNAC	3 cut(s)	34, 251, 347
HpyAV	CCTTC	3 cut(s)	174, 375, 417
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	3 cut(s)	96, 114, 124
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 198, 204, 574
HpyF3I	CTNAG	1 cut(s)	561
HpySE526I	ACGT	1 cut(s)	349
Hsp92I	GRCGYC	1 cut(s)	19
Hsp92II	CATG	3 cut(s)	72, 124, 485
HspAI	GCGC	1 cut(s)	19
KasI	GGCGCC	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	544
Kzo9I	GATC	3 cut(s)	298, 544, 556
LmnI	GCTCC	2 cut(s)	186, 244
Lsp1109I	GCAGC	2 cut(s)	210, 577
LweI	GCATC	1 cut(s)	232
MaeI	CTAG	2 cut(s)	14, 327
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	3 cut(s)	300, 546, 558
MboI	GATC	3 cut(s)	298, 544, 556
MboII	GAAGA	6 cut(s)	95, 142, 145, 180, 288, 369
MluCI	AATT	2 cut(s)	115, 146
Mly113I	GGCGCC	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	400
Mph1103I	ATGCAT	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	228
MspR9I	CCNGG	2 cut(s)	342, 403
MvaI	CCWGG	2 cut(s)	342, 403
MwoI	GCNNNNNNNGC	4 cut(s)	195, 198, 204, 574
NarI	GGCGCC	1 cut(s)	19
NdeII	GATC	3 cut(s)	298, 544, 556
NlaIII	CATG	3 cut(s)	72, 124, 485
NlaIV	GGNNCC	2 cut(s)	20, 188
NmuCI	GTSAC	1 cut(s)	46
NsiI	ATGCAT	1 cut(s)	126
NspI	RCATGY	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	325
PciI	ACATGT	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	4 cut(s)	191, 200, 567, 570
PleI	GAGTC	1 cut(s)	399
PluTI	GGCGCC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	399
PscI	ACATGT	1 cut(s)	68
Psp6I	CCWGG	2 cut(s)	340, 401
PspGI	CCWGG	2 cut(s)	340, 401
PspN4I	GGNNCC	2 cut(s)	20, 188
PspPI	GGNCC	1 cut(s)	426
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	4 cut(s)	190, 199, 566, 569
Sau3AI	GATC	3 cut(s)	298, 544, 556
Sau96I	GGNCC	1 cut(s)	426
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	2 cut(s)	342, 403
SetI	ASST	4 cut(s)	106, 262, 352, 465
SfaNI	GCATC	1 cut(s)	232
SfoI	GGCGCC	1 cut(s)	20
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	115, 146
SseBI	AGGCCT	1 cut(s)	325
SsiI	CCGC	2 cut(s)	184, 190
SspDI	GGCGCC	1 cut(s)	18
SspMI	CTAG	2 cut(s)	14, 327
StuI	AGGCCT	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	340, 401
TaiI	ACGT	1 cut(s)	352
TaqI	TCGA	1 cut(s)	100
TaqII	GACCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	115, 146
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	1 cut(s)	467
TscAI	CASTG	2 cut(s)	51, 418
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	3 cut(s)	198, 565, 568
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	96, 109, 534
TspGWI	ACGGA	2 cut(s)	47, 270
TspRI	CASTG	2 cut(s)	51, 418
XceI	RCATGY	1 cut(s)	72
XspI	CTAG	2 cut(s)	14, 327
ZrmI	AGTACT	1 cut(s)	551
Zsp2I	ATGCAT	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.