Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Forward (+)

7497435 .. 7498122

Gene Structure 688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g09010.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCGGAGCATTTGGCTTCGATATTCGGGACGGAGAAGGACCGAGTGAACTGCCCTTTCTACTTCAAAATTGGGGCGTGTAGGCACGGGGACCGCTGCTCCAGACTCCACACCAAGCCCAGCGTCAGCCCCACGATCTTGCTCTCCAACATGTACCAGCGGCCCGATATCGATCACCCCCGGCGTCGACGGCCAGGGCCAGCCCATCGACCCCCGCCAGATGCAGCGGCACTTCGAGGAGTTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

83

Amino Acids

9.26

Weight (kDa)

10.18

Isoelectric Point (pI)

66.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	187
AciI	CCGC	5 cut(s)	5, 94, 160, 215, 227
AcoI	YGGCCR	1 cut(s)	191
AcyI	GRCGYC	1 cut(s)	184
AfaI	GTAC	1 cut(s)	155
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	67
AjnI	CCWGG	1 cut(s)	193
AoxI	GGCC	3 cut(s)	161, 191, 197
ApeKI	GCWGC	2 cut(s)	96, 224
AspS9I	GGNCC	4 cut(s)	40, 91, 162, 197
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	40, 91
BbvI	GCAGC	2 cut(s)	83, 236
BccI	CCATC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	206
BcgI	CGANNNNNNTGC	2 cut(s)	33, 67
BciT130I	CCWGG	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	181
BisI	GCNGC	4 cut(s)	97, 161, 225, 228
BlsI	GCNGC	4 cut(s)	98, 162, 226, 229
Bme1390I	CCNGG	2 cut(s)	181, 195
Bme18I	GGWCC	2 cut(s)	40, 91
BmgT120I	GGNCC	4 cut(s)	40, 91, 162, 197
BmiI	GGNNCC	1 cut(s)	92
BmrFI	CCNGG	2 cut(s)	181, 195
BmsI	GCATC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	171
BsaBI	GATNNNNATC	1 cut(s)	171
BsaHI	GRCGYC	1 cut(s)	184
BsaJI	CCNNGG	2 cut(s)	179, 194
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	195
BseCI	ATCGAT	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	179, 194
BseJI	GATNNNNATC	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	83, 236
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	3 cut(s)	163, 193, 199
BshVI	ATCGAT	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	2 cut(s)	43, 104
BsmFI	GGGAC	2 cut(s)	43, 104
BsnI	GGCC	3 cut(s)	163, 193, 199
Bsp143I	GATC	2 cut(s)	135, 172
BspACI	CCGC	5 cut(s)	5, 94, 160, 215, 227
BspANI	GGCC	3 cut(s)	163, 193, 199
BspDI	ATCGAT	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	179, 194
BssMI	GATC	2 cut(s)	135, 172
BssNI	GRCGYC	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	201
BstKTI	GATC	2 cut(s)	138, 175
BstMBI	GATC	2 cut(s)	135, 172
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	195
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	179, 193
BstV1I	GCAGC	2 cut(s)	83, 236
Bsu15I	ATCGAT	1 cut(s)	171
BsuRI	GGCC	3 cut(s)	163, 193, 199
BsuTUI	ATCGAT	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	4 cut(s)	40, 91, 162, 197
ClaI	ATCGAT	1 cut(s)	171
CseI	GACGC	2 cut(s)	112, 173
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	151
CviJI	RGCY	7 cut(s)	17, 118, 129, 163, 193, 199, 203
CviKI_1	RGCY	7 cut(s)	17, 118, 129, 163, 193, 199, 203
CviQI	GTAC	1 cut(s)	154
DpnI	GATC	2 cut(s)	137, 174
DpnII	GATC	2 cut(s)	135, 172
EaeI	YGGCCR	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	40, 91
EcoRII	CCWGG	1 cut(s)	193
EcoRV	GATATC	1 cut(s)	169
FaeI	CATG	1 cut(s)	154
FaiI	YATR	2 cut(s)	152, 247
FaqI	GGGAC	2 cut(s)	43, 104
FatI	CATG	1 cut(s)	150
FauI	CCCGC	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	4 cut(s)	97, 161, 225, 228
Fsp4HI	GCNGC	4 cut(s)	97, 161, 225, 228
GluI	GCNGC	4 cut(s)	97, 161, 225, 228
GsaI	CCCAGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	3 cut(s)	163, 193, 199
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	2 cut(s)	112, 173
Hin1I	GRCGYC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HinfI	GANTC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	49, 188
Hpy188III	TCNNGA	2 cut(s)	28, 102
Hpy8I	GTNNAC	2 cut(s)	49, 188
Hpy99I	CGWCG	2 cut(s)	189, 192
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
Hsp92I	GRCGYC	1 cut(s)	184
Hsp92II	CATG	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	135, 172
LmnI	GCTCC	2 cut(s)	7, 104
LpnPI	CCDG	8 cut(s)	115, 133, 170, 180, 194, 207, 213, 231
Lsp1109I	GCAGC	2 cut(s)	83, 236
LweI	GCATC	1 cut(s)	211
MalI	GATC	2 cut(s)	137, 174
MboI	GATC	2 cut(s)	135, 172
MluCI	AATT	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	1 cut(s)	230
MspA1I	CMGCKG	3 cut(s)	96, 160, 227
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	181, 195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	135, 172
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	1 cut(s)	92
NspI	RCATGY	1 cut(s)	154
PciI	ACATGT	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	98, 162, 226, 229
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	4 cut(s)	40, 91, 162, 197
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SalI	GTCGAC	1 cut(s)	186
SatI	GCNGC	4 cut(s)	97, 161, 225, 228
Sau3AI	GATC	2 cut(s)	135, 172
Sau96I	GGNCC	4 cut(s)	40, 91, 162, 197
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	181, 195
SfaNI	GCATC	1 cut(s)	211
SgrDI	CGTCGACG	1 cut(s)	186
SinI	GGWCC	2 cut(s)	40, 91
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	5 cut(s)	5, 94, 160, 215, 227
StyD4I	CCNGG	2 cut(s)	179, 193
TaqI	TCGA	5 cut(s)	20, 171, 187, 208, 235
TaqII	GACCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	69
TauI	GCSGC	2 cut(s)	163, 230
TseI	GCWGC	2 cut(s)	96, 224
TspGWI	ACGGA	1 cut(s)	47
VpaK11BI	GGWCC	2 cut(s)	40, 91
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.