Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Forward (+)

1145341 .. 1147646

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01370.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCGGAGCACTTAGCATCCATCTTCGGCACCGAGAAGGACCGCGTCAACTGCCCCTTCTACTTCAAGATCGGAGCTTGCCGGCACGGCGACCGCTGCTCCCGCCTCCACACCAAGCCCAGCATCAGCCCCACCCTCCTCCTCTCCAACATGTACCAGCACCCCGATATGCTCACCAACCCCGGCGTCGACCCCAAGGGCCAAGCCATCGACCCCCGCAAGATCCAGGACAACTTCGAGGATTTTTATGAGGATCTGTTTGAGGAACTGAGCAAGTACGGACAGATCGAGAGCTTGAACATCTGTGACAATTTGGCTGATCACATGGTTGGTAATGTGTACGTTCAGTTCAGGGAGGAGGACCATGCTCAAGCTGCGCTTCAGAATCTCACTGGGAGGTTCTATGCAGGGCGTCCCATCATTGTCGACTTTTCCCCGGTGACGGATTTTCGTGAAGCTACCTGTAGGCAGTATGAAGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTCATGCACTTGAAGAAAATTAGCAGGGAGTTGAGGAGGCGGTTATTTGGGAGAAACAAGCGAAGGCATAGTCGCAGTCGAAGCAGAAGCCGCAGTCCTCAAAGGCATCAACGTGGTGGTTATCAGGAGCGCCCACATGGAGGTCGTGGTTTCGGTAGAAGAGGAGAAGATGAGAGAGATCGATCGTTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

235

Amino Acids

27.33

Weight (kDa)

9.22

Isoelectric Point (pI)

64.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	29
AccI	GTMKAC	2 cut(s)	189, 426
AccII	CGCG	1 cut(s)	45
AciI	CCGC	7 cut(s)	5, 43, 94, 103, 217, 550, 601
AclWI	GGATC	2 cut(s)	217, 261
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	2 cut(s)	186, 412
AfaI	GTAC	3 cut(s)	155, 278, 341
AfiI	CCNNNNNNNGG	2 cut(s)	442, 650
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	4 cut(s)	67, 298, 523, 701
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	4 cut(s)	77, 294, 374, 458
AluI	AGCT	4 cut(s)	77, 294, 374, 458
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	217, 261
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	2 cut(s)	96, 374
ArsI	GACNNNNNNTTYG	2 cut(s)	565, 597
AspLEI	GCGC	2 cut(s)	379, 642
AspS9I	GGNCC	3 cut(s)	40, 199, 361
AsuC2I	CCSGG	2 cut(s)	183, 437
AsuHPI	GGTGA	2 cut(s)	166, 451
AvaII	GGWCC	2 cut(s)	40, 361
BanI	GGYRCC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	83, 361
BccI	CCATC	3 cut(s)	29, 215, 425
BceAI	ACGGC	1 cut(s)	103
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	2 cut(s)	183, 437
BfmI	CTRYAG	1 cut(s)	463
BfoI	RGCGCY	1 cut(s)	643
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	3 cut(s)	97, 375, 601
BlsI	GCNGC	3 cut(s)	98, 376, 602
Bme1390I	CCNGG	3 cut(s)	183, 227, 437
Bme18I	GGWCC	2 cut(s)	40, 361
BmgT120I	GGNCC	3 cut(s)	40, 199, 361
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	3 cut(s)	183, 227, 437
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	26, 132, 625
BmuI	ACTGGG	1 cut(s)	402
BpuEI	CTTGAG	1 cut(s)	354
BpuMI	CCSGG	2 cut(s)	183, 437
Bsa29I	ATCGAT	1 cut(s)	691
BsaHI	GRCGYC	2 cut(s)	186, 412
BsaJI	CCNNGG	3 cut(s)	181, 195, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	442, 650
Bse118I	RCCGGY	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	691
BseDI	CCNNGG	3 cut(s)	181, 195, 435
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	2 cut(s)	442, 650
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	5 cut(s)	128, 131, 371, 559, 687
BseXI	GCAGC	2 cut(s)	83, 361
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	2 cut(s)	94, 695
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	691
BsiEI	CGRYCG	2 cut(s)	94, 695
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	3 cut(s)	82, 183, 437
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	442, 650
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	7 cut(s)	69, 222, 253, 285, 319, 688, 692
BspACI	CCGC	7 cut(s)	5, 43, 94, 103, 217, 550, 601
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	261
BspDI	ATCGAT	1 cut(s)	691
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	31
BspPI	GGATC	2 cut(s)	217, 261
BspT107I	GGYRCC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	1 cut(s)	81
BssECI	CCNNGG	3 cut(s)	181, 195, 435
BssMI	GATC	7 cut(s)	69, 222, 253, 285, 319, 688, 692
BssNI	GRCGYC	2 cut(s)	186, 412
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	664
BstACI	GRCGYC	2 cut(s)	186, 412
BstC8I	GCNNGC	2 cut(s)	79, 83
BstDEI	CTNAG	2 cut(s)	13, 269
BstF5I	GGATG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	643
BstHHI	GCGC	2 cut(s)	379, 642
BstKTI	GATC	7 cut(s)	72, 225, 256, 288, 322, 691, 695
BstMBI	GATC	7 cut(s)	69, 222, 253, 285, 319, 688, 692
BstMCI	CGRYCG	2 cut(s)	94, 695
BstMWI	GCNNNNNNNGC	7 cut(s)	51, 87, 96, 102, 374, 591, 600
BstNI	CCWGG	1 cut(s)	227
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	3 cut(s)	181, 225, 435
BstSFI	CTRYAG	1 cut(s)	463
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	2 cut(s)	83, 361
BstX2I	RGATCY	2 cut(s)	222, 253
BstYI	RGATCY	2 cut(s)	222, 253
Bsu15I	ATCGAT	1 cut(s)	691
BsuRI	GGCC	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	691
BtsCI	GGATG	1 cut(s)	17
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	79, 83
CfoI	GCGC	2 cut(s)	379, 642
Cfr10I	RCCGGY	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	40, 199, 361
ClaI	ATCGAT	1 cut(s)	691
CseI	GACGC	3 cut(s)	34, 175, 401
Csp6I	GTAC	3 cut(s)	154, 277, 340
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviAII	CATG	5 cut(s)	151, 325, 365, 514, 647
CviQI	GTAC	3 cut(s)	154, 277, 340
DdeI	CTNAG	2 cut(s)	13, 269
DpnI	GATC	7 cut(s)	71, 224, 255, 287, 321, 690, 694
DpnII	GATC	7 cut(s)	69, 222, 253, 285, 319, 688, 692
Eam1104I	CTCTTC	1 cut(s)	664
EarI	CTCTTC	1 cut(s)	664
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	40, 361
Eco57I	CTGAAG	1 cut(s)	365
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	195
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	5 cut(s)	154, 328, 368, 517, 650
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	5 cut(s)	150, 324, 364, 513, 646
FauI	CCCGC	2 cut(s)	110, 224
FbaI	TGATCA	1 cut(s)	319
FblI	GTMKAC	2 cut(s)	189, 426
Fnu4HI	GCNGC	3 cut(s)	97, 375, 601
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	3 cut(s)	97, 375, 601
GlaI	GCGC	2 cut(s)	378, 641
GluI	GCNGC	3 cut(s)	97, 375, 601
GsaI	CCCAGC	1 cut(s)	123
HaeII	RGCGCY	1 cut(s)	643
HaeIII	GGCC	1 cut(s)	201
HapII	CCGG	3 cut(s)	82, 183, 437
HgaI	GACGC	3 cut(s)	34, 175, 401
HhaI	GCGC	2 cut(s)	379, 642
Hin1I	GRCGYC	2 cut(s)	186, 412
Hin1II	CATG	5 cut(s)	154, 328, 368, 517, 650
Hin6I	GCGC	2 cut(s)	377, 640
HinP1I	GCGC	2 cut(s)	377, 640
HincII	GTYRAC	3 cut(s)	49, 190, 427
HindII	GTYRAC	3 cut(s)	49, 190, 427
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	3 cut(s)	82, 183, 437
HphI	GGTGA	2 cut(s)	166, 451
Hpy166II	GTNNAC	4 cut(s)	49, 190, 340, 427
Hpy188I	TCNGA	2 cut(s)	74, 384
Hpy188III	TCNNGA	4 cut(s)	67, 289, 452, 635
Hpy8I	GTNNAC	4 cut(s)	49, 190, 340, 427
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	31, 67, 567
HpyCH4IV	ACGT	2 cut(s)	342, 622
HpyCH4V	TGCA	4 cut(s)	407, 489, 507, 517
HpyF10VI	GCNNNNNNNGC	7 cut(s)	51, 87, 96, 102, 374, 591, 600
HpyF3I	CTNAG	2 cut(s)	13, 269
HpySE526I	ACGT	2 cut(s)	342, 622
Hsp92I	GRCGYC	2 cut(s)	186, 412
Hsp92II	CATG	5 cut(s)	154, 328, 368, 517, 650
HspAI	GCGC	2 cut(s)	377, 640
KroI	GCCGGC	1 cut(s)	81
KroNI	GCCGGC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	7 cut(s)	69, 222, 253, 285, 319, 688, 692
LmnI	GCTCC	4 cut(s)	7, 74, 104, 637
Lsp1109I	GCAGC	2 cut(s)	83, 361
LweI	GCATC	3 cut(s)	26, 132, 625
MaeII	ACGT	2 cut(s)	342, 622
MaeIII	GTNAC	2 cut(s)	305, 439
MalI	GATC	7 cut(s)	71, 224, 255, 287, 321, 690, 694
MboI	GATC	7 cut(s)	69, 222, 253, 285, 319, 688, 692
MboII	GAAGA	5 cut(s)	16, 488, 535, 681, 689
MflI	RGATCY	2 cut(s)	222, 253
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	2 cut(s)	310, 528
MmeI	TCCRAC	1 cut(s)	171
MroNI	GCCGGC	1 cut(s)	81
MslI	CAYNNNNRTG	1 cut(s)	621
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	3 cut(s)	82, 183, 437
MspR9I	CCNGG	3 cut(s)	183, 227, 437
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	7 cut(s)	51, 87, 96, 102, 374, 591, 600
NaeI	GCCGGC	1 cut(s)	83
NciI	CCSGG	2 cut(s)	183, 437
NdeII	GATC	7 cut(s)	69, 222, 253, 285, 319, 688, 692
NgoMIV	GCCGGC	1 cut(s)	81
NlaIII	CATG	5 cut(s)	154, 328, 368, 517, 650
NlaIV	GGNNCC	1 cut(s)	31
NmuCI	GTSAC	2 cut(s)	305, 439
NspI	RCATGY	1 cut(s)	154
PciI	ACATGT	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	385
PflFI	GACNNNGTC	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	225
PkrI	GCNGC	3 cut(s)	98, 376, 602
Ple19I	CGATCG	1 cut(s)	695
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	3 cut(s)	40, 199, 361
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
PsuI	RGATCY	2 cut(s)	222, 253
PsyI	GACNNNGTC	1 cut(s)	44
PvuI	CGATCG	1 cut(s)	695
RsaI	GTAC	3 cut(s)	155, 278, 341
RsaNI	GTAC	3 cut(s)	154, 277, 340
RseI	CAYNNNNRTG	1 cut(s)	621
SalI	GTCGAC	2 cut(s)	188, 425
SatI	GCNGC	3 cut(s)	97, 375, 601
Sau3AI	GATC	7 cut(s)	69, 222, 253, 285, 319, 688, 692
Sau96I	GGNCC	3 cut(s)	40, 199, 361
ScrFI	CCNGG	3 cut(s)	183, 227, 437
SduI	GDGCHC	1 cut(s)	12
SfaNI	GCATC	3 cut(s)	26, 132, 625
SfcI	CTRYAG	1 cut(s)	463
SinI	GGWCC	2 cut(s)	40, 361
SmiMI	CAYNNNNRTG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	310, 528
SsiI	CCGC	7 cut(s)	5, 43, 94, 103, 217, 550, 601
StyD4I	CCNGG	3 cut(s)	181, 225, 435
StyI	CCWWGG	1 cut(s)	195
TaiI	ACGT	2 cut(s)	345, 625
TaqI	TCGA	8 cut(s)	189, 210, 237, 288, 426, 493, 589, 691
TasI	AATT	2 cut(s)	310, 528
TauI	GCSGC	1 cut(s)	603
TfiI	GAWTC	1 cut(s)	385
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	2 cut(s)	305, 439
TseI	GCWGC	2 cut(s)	96, 374
Tsp45I	GTSAC	2 cut(s)	305, 439
TspDTI	ATGAA	2 cut(s)	489, 502
TspGWI	ACGGA	2 cut(s)	294, 458
TspRI	CASTG	1 cut(s)	397
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	40, 361
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	2 cut(s)	189, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.