Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002532.1

Orthogroup ID

OG0007614

Physical Location & Seq

Genomic Coordinates Forward (+)

19501 .. 20135

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002532.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggcggagcacttggcatcgatcttcggcacagagaaggacagggttaactgccctttctacttcaagatcggcgcctgccgacatggcgaccgctgctctcgcctccacaccaagcccagcatcagccccacccttctcctctccaacatgtaccagcgccccgatatgctcaccaaccccggcgtcgacccccagggccaggccctcgacccccgcaagatccaagacaacttcgaggatttctatgaggatctattcgaggagctgagcaagtacggacagatcgagagcttgaatatctgtgataatttggctgaccacatggttgggaatgtgtacgttcagttcagggaggaagagcatgctgccgccgcgcttcagaatctcactgggaggttctatgcaggttattttctgatgcattatagacatatacaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000375 GO:0000377 GO:0000398 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008380 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009791 GO:0009987 GO:0010228 GO:0010467 GO:0016070 GO:0016071 GO:0022414 GO:0030628 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0036002 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 ko05131 map03040 map05131

Pfam Domains

Protein Families

RRM_1 zf-CCCH

Protein Analysis

148

Amino Acids

17.09

Weight (kDa)

5.57

Isoelectric Point (pI)

50.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007614)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44785
fragaria_vesca	FvH4_6g17780
malus_domestica	MD00G1150600.v1.1 MD03G1134000.v1.1 MD12G1016800.v1.1 MD12G1094300.v1.1 MD14G1014800.v1.1
prunus_persica	Prupe.7G118600_v2.0.a1
pyrus_communis	pycom03g09010 pycom12g01370 pycom14g01230
rosa_chinensis	RchiOBHm_Chr3g0472021
rosa_laevigata	RLG00000024111
rosa_multiflora	Rmu_sc0000090.1_g000034 Rmu_sc0002532.1_g000005 Rmu_sc0002532.1_g000007 Rmu_sc0002532.1_g000008
rosa_roxburghii	Rroxscaffold_6G00409320
rosa_rugosa	Rorug03G0121700
rosa_samantha	Rh3AG173300 Rh3BG198700 Rh3CG189900 Rh3CG197200
rosa_wichuraiana	Rw3G016730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	74
AccI	GTMKAC	1 cut(s)	189
AccII	CGCG	1 cut(s)	377
AciI	CCGC	5 cut(s)	5, 94, 217, 372, 375
AclWI	GGATC	2 cut(s)	217, 261
AcuI	CTGAAG	1 cut(s)	365
AcyI	GRCGYC	2 cut(s)	75, 186
AfaI	GTAC	3 cut(s)	155, 278, 341
AfiI	CCNNNNNNNGG	1 cut(s)	202
AflIII	ACRYGT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	67, 298
AjnI	CCWGG	2 cut(s)	195, 201
AluBI	AGCT	2 cut(s)	268, 294
AluI	AGCT	2 cut(s)	268, 294
Alw21I	GWGCWC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	217, 261
AoxI	GGCC	2 cut(s)	199, 204
ApeKI	GCWGC	2 cut(s)	96, 368
AspLEI	GCGC	3 cut(s)	77, 162, 379
AspS9I	GGNCC	2 cut(s)	199, 205
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	166
BanI	GGYRCC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	83, 355
BciT130I	CCWGG	2 cut(s)	197, 203
BcnI	CCSGG	1 cut(s)	183
BfoI	RGCGCY	2 cut(s)	78, 163
BfuAI	ACCTGC	1 cut(s)	398
BglI	GCCNNNNNGGC	1 cut(s)	87
BisI	GCNGC	4 cut(s)	97, 369, 372, 375
BlpI	GCTNAGC	1 cut(s)	269
BlsI	GCNGC	4 cut(s)	98, 370, 373, 376
Bme1390I	CCNGG	3 cut(s)	183, 197, 203
BmgT120I	GGNCC	2 cut(s)	199, 205
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	3 cut(s)	183, 197, 203
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	3 cut(s)	26, 132, 411
BmuI	ACTGGG	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	269
BpuMI	CCSGG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	20
BsaHI	GRCGYC	2 cut(s)	75, 186
BsaJI	CCNNGG	3 cut(s)	181, 195, 196
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	397
BseBI	CCWGG	2 cut(s)	197, 203
BseCI	ATCGAT	1 cut(s)	20
BseDI	CCNNGG	3 cut(s)	181, 195, 196
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	397
BseRI	GAGGAG	2 cut(s)	131, 278
BseXI	GCAGC	2 cut(s)	83, 355
BseYI	CCCAGC	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	377
Bsh1285I	CGRYCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	201, 206
BshNI	GGYRCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	20
BsiEI	CGRYCG	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	202
BsnI	GGCC	2 cut(s)	201, 206
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	5 cut(s)	21, 69, 222, 253, 285
Bsp1720I	GCTNAGC	1 cut(s)	269
BspACI	CCGC	5 cut(s)	5, 94, 217, 372, 375
BspANI	GGCC	2 cut(s)	201, 206
BspCNI	CTCAG	1 cut(s)	261
BspDI	ATCGAT	1 cut(s)	20
BspFNI	CGCG	1 cut(s)	377
BspLI	GGNNCC	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	398
BspPI	GGATC	2 cut(s)	217, 261
BspQI	GCTCTTC	1 cut(s)	354
BspT107I	GGYRCC	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	397
BssECI	CCNNGG	3 cut(s)	181, 195, 196
BssMI	GATC	5 cut(s)	21, 69, 222, 253, 285
BssNI	GRCGYC	2 cut(s)	75, 186
Bst2UI	CCWGG	2 cut(s)	197, 203
Bst6I	CTCTTC	1 cut(s)	354
BstACI	GRCGYC	2 cut(s)	75, 186
BstC8I	GCNNGC	2 cut(s)	79, 366
BstDEI	CTNAG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	377
BstH2I	RGCGCY	2 cut(s)	78, 163
BstHHI	GCGC	3 cut(s)	77, 162, 379
BstKTI	GATC	5 cut(s)	24, 72, 225, 256, 288
BstMBI	GATC	5 cut(s)	21, 69, 222, 253, 285
BstMCI	CGRYCG	1 cut(s)	94
BstMWI	GCNNNNNNNGC	4 cut(s)	87, 96, 102, 374
BstNI	CCWGG	2 cut(s)	197, 203
BstNSI	RCATGY	2 cut(s)	154, 368
BstSCI	CCNGG	3 cut(s)	181, 195, 201
BstUI	CGCG	1 cut(s)	377
BstV1I	GCAGC	2 cut(s)	83, 355
BstX2I	RGATCY	2 cut(s)	222, 253
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstYI	RGATCY	2 cut(s)	222, 253
Bsu15I	ATCGAT	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	201, 206
BsuTUI	ATCGAT	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	390
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	2 cut(s)	79, 366
CfoI	GCGC	3 cut(s)	77, 162, 379
Cfr13I	GGNCC	2 cut(s)	199, 205
ClaI	ATCGAT	1 cut(s)	20
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	154, 277, 340
CviAII	CATG	4 cut(s)	86, 151, 325, 365
CviJI	RGCY	7 cut(s)	118, 129, 201, 206, 268, 294, 317
CviKI_1	RGCY	7 cut(s)	118, 129, 201, 206, 268, 294, 317
CviQI	GTAC	3 cut(s)	154, 277, 340
DdeI	CTNAG	1 cut(s)	269
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	5 cut(s)	23, 71, 224, 255, 287
DpnII	GATC	5 cut(s)	21, 69, 222, 253, 285
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	365
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	195, 201
EcoT22I	ATGCAT	1 cut(s)	426
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
FaeI	CATG	4 cut(s)	89, 154, 328, 368
FatI	CATG	4 cut(s)	85, 150, 324, 364
FauI	CCCGC	1 cut(s)	224
FblI	GTMKAC	1 cut(s)	189
Fnu4HI	GCNGC	4 cut(s)	97, 369, 372, 375
Fsp4HI	GCNGC	4 cut(s)	97, 369, 372, 375
GlaI	GCGC	3 cut(s)	76, 161, 378
GluI	GCNGC	4 cut(s)	97, 369, 372, 375
GsaI	CCCAGC	1 cut(s)	123
HaeII	RGCGCY	2 cut(s)	78, 163
HaeIII	GGCC	2 cut(s)	201, 206
HapII	CCGG	1 cut(s)	183
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	3 cut(s)	77, 162, 379
Hin1I	GRCGYC	2 cut(s)	75, 186
Hin1II	CATG	4 cut(s)	89, 154, 328, 368
Hin6I	GCGC	3 cut(s)	75, 160, 377
HinP1I	GCGC	3 cut(s)	75, 160, 377
HincII	GTYRAC	2 cut(s)	49, 190
HindII	GTYRAC	2 cut(s)	49, 190
HinfI	GANTC	1 cut(s)	385
HpaI	GTTAAC	1 cut(s)	49
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	3 cut(s)	49, 190, 340
Hpy188I	TCNGA	2 cut(s)	384, 420
Hpy188III	TCNNGA	2 cut(s)	67, 289
Hpy8I	GTNNAC	3 cut(s)	49, 190, 340
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	2 cut(s)	31, 146
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	2 cut(s)	407, 424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	87, 96, 102, 374
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	2 cut(s)	75, 186
Hsp92II	CATG	4 cut(s)	89, 154, 328, 368
HspAI	GCGC	3 cut(s)	75, 160, 377
KasI	GGCGCC	1 cut(s)	74
KspAI	GTTAAC	1 cut(s)	49
Kzo9I	GATC	5 cut(s)	21, 69, 222, 253, 285
LguI	GCTCTTC	1 cut(s)	354
LmnI	GCTCC	2 cut(s)	7, 265
Lsp1109I	GCAGC	2 cut(s)	83, 355
LweI	GCATC	3 cut(s)	26, 132, 411
MaeII	ACGT	1 cut(s)	342
MalI	GATC	5 cut(s)	23, 71, 224, 255, 287
MboI	GATC	5 cut(s)	21, 69, 222, 253, 285
MboII	GAAGA	2 cut(s)	16, 371
MflI	RGATCY	2 cut(s)	222, 253
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	1 cut(s)	310
Mly113I	GGCGCC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	8 cut(s)	116, 152, 218, 232, 244, 256, 349, 390
Mph1103I	ATGCAT	1 cut(s)	426
MseI	TTAA	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	96
MspI	CCGG	1 cut(s)	183
MspR9I	CCNGG	3 cut(s)	183, 197, 203
MvaI	CCWGG	2 cut(s)	197, 203
MvnI	CGCG	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	87, 96, 102, 374
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	5 cut(s)	21, 69, 222, 253, 285
NlaIII	CATG	4 cut(s)	89, 154, 328, 368
NlaIV	GGNNCC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	426
NspI	RCATGY	2 cut(s)	154, 368
PaeI	GCATGC	1 cut(s)	368
PasI	CCCWGGG	1 cut(s)	196
PciI	ACATGT	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	354
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	4 cut(s)	98, 370, 373, 376
PluTI	GGCGCC	1 cut(s)	78
PscI	ACATGT	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	195, 201
PspFI	CCCAGC	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	195, 201
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	199, 205
PsrI	GAACNNNNNNTAC	2 cut(s)	332, 364
PsuI	RGATCY	2 cut(s)	222, 253
RsaI	GTAC	3 cut(s)	155, 278, 341
RsaNI	GTAC	3 cut(s)	154, 277, 340
SalI	GTCGAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	354
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	4 cut(s)	97, 369, 372, 375
Sau3AI	GATC	5 cut(s)	21, 69, 222, 253, 285
Sau96I	GGNCC	2 cut(s)	199, 205
ScrFI	CCNGG	3 cut(s)	183, 197, 203
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	5 cut(s)	270, 296, 345, 401, 412
SfaNI	GCATC	3 cut(s)	26, 132, 411
SfoI	GGCGCC	1 cut(s)	76
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	5 cut(s)	5, 94, 217, 372, 375
SspDI	GGCGCC	1 cut(s)	74
StyD4I	CCNGG	3 cut(s)	181, 195, 201
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	6 cut(s)	20, 189, 210, 237, 261, 288
TasI	AATT	1 cut(s)	310
TauI	GCSGC	2 cut(s)	374, 377
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	397
TseI	GCWGC	2 cut(s)	96, 368
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	397
XceI	RCATGY	2 cut(s)	154, 368
XmiI	GTMKAC	1 cut(s)	189
Zsp2I	ATGCAT	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.