Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Reverse (-)

16570478 .. 16573762

Gene Structure 3285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGTTTTGTGATAGTTTTGCATTTGCCCAAGTGATGAGTTGCTTCGGGTGTTTTGGTGGCTCTGAGAGATCAAGACATTCACCAAATCCATATGATGATGATACATATTCCCATGATAGTGGTGAAACCAGCAATCCGGGAGGAGATGATGAAGAAGGAGAAGAGGAAGAGGAAGTAGAGGAGCTAAGTCGTTCCAAACGATCTGAAGAAATTTTGAAATGTAAACTACAAAATGGACTAGTCTGCAGGCAGTTTCCAGTCAAGGAAACTAATAAACTTACACGCGGAGAGGATGAAGATGGAAACAAGACAATAAATGAGTTTGTTCGTGAGCGTAAAATTGGATCTGGTAGTTATGGGAAAGTGGTTCTCTATCGAAGCACTGTCGATGACAAGCATTATGCTATTAAGGCTTTTCACAAGTCACATTTATCGAGGCTACGGGTTGCACCTTCAGAAACTGCTATGGGTGATGTTCTTCGTGAGGTTATGATTATGAAAACCCTGGAGCATCCTAATATCGTTAATCTCATTGAGGTGATTGATGACCCTGAGTTTGATGATTTTTACATGGTTCTCGAATATGTTGATGGAAAATGGGCCTATGATGATTCTGGACCACCGGGTGCTCTCGGAGAAATTACTGCTAGAAAGTACTTGCGCGATGTAGTTGCCGGCCTCATGTACCTTCATGCTCATAATGTAATTCATGGTGACATCAAACCTGACAATTTACTGGTTACTAGTACCGGGAGAGTGAAAATAGGAGATTTCAGTGTCAGCCAAGTATTCAAAGATGATGATGATCAACTCCGTAGATCACCCGGCACTCCTGTCTTTACTGCCCCAGAATGTTGTTTAGGTATAACATACAGTGGAAGATCTGCAGATACGTGGGCAGTAGGAGTTACTTTGTATTGTATGATTTTAGGACAATACCCATTTCTGGGTGATACACTTCAAGATACTTATGACAAGATTGTTCACAACCCGTTGATAATACCGGAAGGACTCAATCCTCGTCTAAGGGACTTGATCGAAGGTCTCCTTTGCAAAGATCCAAACCAGAGGATGACGTTGAAAGCTGTGGCGGAGCATCCATGGATCACAGGAGAAGACGGGGCTATTTCGGAATACTGTTGTTGGTGCAAACGCAAAGCTGAAGAAGAAGAAGATCAAAACCATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

396

Amino Acids

44.57

Weight (kDa)

4.85

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	109 - 369	1.5e-57	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	111 - 365	2.6e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	285, 663
AciI	CCGC	2 cut(s)	285, 1091
AclWI	GGATC	3 cut(s)	352, 1052, 1112
AcsI	RAATTY	1 cut(s)	210
AcuI	CTGAAG	3 cut(s)	225, 438, 1182
AdeI	CACNNNGTG	1 cut(s)	626
AfaI	GTAC	3 cut(s)	656, 686, 748
AfiI	CCNNNNNNNGG	2 cut(s)	946, 947
AgsI	TTSAA	4 cut(s)	217, 793, 962, 1081
AhlI	ACTAGT	2 cut(s)	238, 743
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	4 cut(s)	184, 1085, 1160, 1188
AluI	AGCT	4 cut(s)	184, 1085, 1160, 1188
Alw21I	GWGCWC	1 cut(s)	631
Alw26I	GTCTC	1 cut(s)	1049
AlwI	GGATC	3 cut(s)	352, 1052, 1112
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	2 cut(s)	600, 676
ApoI	RAATTY	1 cut(s)	210
ArsI	GACNNNNNNTTYG	2 cut(s)	539, 571
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	2 cut(s)	600, 617
AsuC2I	CCSGG	4 cut(s)	138, 624, 751, 825
AsuHPI	GGTGA	7 cut(s)	72, 134, 482, 550, 725, 813, 962
AvaII	GGWCC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	1122
Bbv12I	GWGCWC	1 cut(s)	631
BccI	CCATC	2 cut(s)	293, 584
BcgI	CGANNNNNNTGC	2 cut(s)	653, 687
BciT130I	CCWGG	1 cut(s)	506
BclI	TGATCA	1 cut(s)	805
BcnI	CCSGG	4 cut(s)	138, 624, 751, 825
BcoDI	GTCTC	1 cut(s)	1049
BcuI	ACTAGT	2 cut(s)	238, 743
BfaI	CTAG	3 cut(s)	239, 648, 744
BfmI	CTRYAG	2 cut(s)	244, 885
BglII	AGATCT	1 cut(s)	881
BmcAI	AGTACT	1 cut(s)	656
Bme1390I	CCNGG	5 cut(s)	138, 506, 624, 751, 825
Bme18I	GGWCC	1 cut(s)	617
BmgT120I	GGNCC	2 cut(s)	600, 617
BmrFI	CCNGG	5 cut(s)	138, 506, 624, 751, 825
BmsI	GCATC	2 cut(s)	520, 1105
BpiI	GAAGAC	1 cut(s)	1122
BpmI	CTGGAG	1 cut(s)	527
BpuMI	CCSGG	4 cut(s)	138, 624, 751, 825
BsaAI	YACGTR	1 cut(s)	894
BsaBI	GATNNNNATC	1 cut(s)	804
BsaI	GGTCTC	1 cut(s)	1049
BsaJI	CCNNGG	2 cut(s)	504, 1100
BsaWI	WCCGGW	1 cut(s)	1003
Bsc4I	CCNNNNNNNGG	2 cut(s)	946, 947
Bse118I	RCCGGY	1 cut(s)	674
Bse1I	ACTGG	2 cut(s)	257, 741
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	2 cut(s)	504, 1100
BseGI	GGATG	4 cut(s)	298, 511, 1077, 1096
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	2 cut(s)	946, 947
BseMII	CTCAG	2 cut(s)	54, 543
BseNI	ACTGG	2 cut(s)	257, 741
BseRI	GAGGAG	2 cut(s)	156, 194
Bsh1236I	CGCG	2 cut(s)	285, 663
BshFI	GGCC	2 cut(s)	602, 678
BsiHKAI	GWGCWC	1 cut(s)	631
BsiSI	CCGG	6 cut(s)	137, 623, 675, 750, 825, 1004
BslFI	GGGAC	1 cut(s)	1043
BslI	CCNNNNNNNGG	2 cut(s)	946, 947
BsmAI	GTCTC	1 cut(s)	1049
BsmFI	GGGAC	1 cut(s)	1043
BsnI	GGCC	2 cut(s)	602, 678
Bso31I	GGTCTC	1 cut(s)	1049
Bsp1286I	GDGCHC	1 cut(s)	631
Bsp19I	CCATGG	1 cut(s)	1100
BspACI	CCGC	2 cut(s)	285, 1091
BspANI	GGCC	2 cut(s)	602, 678
BspCNI	CTCAG	2 cut(s)	55, 544
BspFNI	CGCG	2 cut(s)	285, 663
BspMAI	CTGCAG	2 cut(s)	248, 889
BspPI	GGATC	3 cut(s)	352, 1052, 1112
BspTNI	GGTCTC	1 cut(s)	1049
BsrFI	RCCGGY	1 cut(s)	674
BsrI	ACTGG	2 cut(s)	257, 741
BssAI	RCCGGY	1 cut(s)	674
BssECI	CCNNGG	2 cut(s)	504, 1100
BssT1I	CCWWGG	1 cut(s)	1100
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	3 cut(s)	385, 875, 1139
Bst6I	CTCTTC	2 cut(s)	156, 162
BstBAI	YACGTR	1 cut(s)	894
BstC8I	GCNNGC	2 cut(s)	248, 676
BstDEI	CTNAG	4 cut(s)	63, 185, 552, 1025
BstDSI	CCRYGG	1 cut(s)	1100
BstF5I	GGATG	4 cut(s)	298, 511, 1077, 1096
BstFNI	CGCG	2 cut(s)	285, 663
BstHHI	GCGC	1 cut(s)	663
BstMAI	GTCTC	1 cut(s)	1049
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	506
BstSCI	CCNGG	5 cut(s)	136, 504, 622, 749, 823
BstSFI	CTRYAG	2 cut(s)	244, 885
BstUI	CGCG	2 cut(s)	285, 663
BstV2I	GAAGAC	1 cut(s)	1122
BstX2I	RGATCY	3 cut(s)	344, 881, 1057
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	3 cut(s)	344, 881, 1057
BsuRI	GGCC	2 cut(s)	602, 678
BtgI	CCRYGG	1 cut(s)	1100
BtgZI	GCGATG	1 cut(s)	678
BtsCI	GGATG	4 cut(s)	298, 511, 1077, 1096
BtsIMutI	CAGTG	3 cut(s)	381, 781, 880
Cac8I	GCNNGC	2 cut(s)	248, 676
CaiI	CAGNNNCTG	1 cut(s)	461
CfoI	GCGC	1 cut(s)	663
Cfr10I	RCCGGY	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	600, 617
Csp6I	GTAC	3 cut(s)	655, 685, 747
CviAII	CATG	6 cut(s)	113, 571, 682, 692, 710, 1101
CviQI	GTAC	3 cut(s)	655, 685, 747
DdeI	CTNAG	4 cut(s)	63, 185, 552, 1025
DraIII	CACNNNGTG	1 cut(s)	626
Eam1104I	CTCTTC	2 cut(s)	156, 162
EarI	CTCTTC	2 cut(s)	156, 162
EciI	GGCGGA	1 cut(s)	1106
Eco130I	CCWWGG	1 cut(s)	1100
Eco31I	GGTCTC	1 cut(s)	1049
Eco47I	GGWCC	1 cut(s)	617
Eco57I	CTGAAG	3 cut(s)	225, 438, 1182
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	1100
ErhI	CCWWGG	1 cut(s)	1100
FaeI	CATG	6 cut(s)	116, 574, 685, 695, 713, 1104
FalI	AAGNNNNNCTT	2 cut(s)	1032, 1064
FaqI	GGGAC	1 cut(s)	1043
FatI	CATG	6 cut(s)	112, 570, 681, 691, 709, 1100
FauNDI	CATATG	1 cut(s)	91
FbaI	TGATCA	1 cut(s)	805
FokI	GGATG	4 cut(s)	305, 498, 1083, 1084
FspBI	CTAG	3 cut(s)	239, 648, 744
GlaI	GCGC	1 cut(s)	662
GsuI	CTGGAG	1 cut(s)	527
HaeIII	GGCC	2 cut(s)	602, 678
HapII	CCGG	6 cut(s)	137, 623, 675, 750, 825, 1004
HhaI	GCGC	1 cut(s)	663
Hin1II	CATG	6 cut(s)	116, 574, 685, 695, 713, 1104
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HinfI	GANTC	2 cut(s)	611, 1011
HpaII	CCGG	6 cut(s)	137, 623, 675, 750, 825, 1004
HphI	GGTGA	7 cut(s)	72, 134, 482, 550, 725, 813, 962
Hpy166II	GTNNAC	2 cut(s)	224, 985
Hpy188I	TCNGA	5 cut(s)	64, 205, 457, 635, 1132
Hpy188III	TCNNGA	6 cut(s)	72, 329, 482, 578, 615, 962
Hpy8I	GTNNAC	2 cut(s)	224, 985
HpyAV	CCTTC	5 cut(s)	149, 462, 698, 1001, 1034
HpyCH4III	ACNGT	3 cut(s)	385, 875, 1139
HpyCH4IV	ACGT	2 cut(s)	893, 1076
HpyCH4V	TGCA	6 cut(s)	20, 246, 449, 887, 1053, 1149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	4 cut(s)	63, 185, 552, 1025
HpySE526I	ACGT	2 cut(s)	893, 1076
Hsp92II	CATG	6 cut(s)	116, 574, 685, 695, 713, 1104
HspAI	GCGC	1 cut(s)	661
KroI	GCCGGC	1 cut(s)	674
KroNI	GCCGGC	1 cut(s)	676
Ksp22I	TGATCA	1 cut(s)	805
LmnI	GCTCC	3 cut(s)	181, 508, 1093
LweI	GCATC	2 cut(s)	520, 1105
MaeI	CTAG	3 cut(s)	239, 648, 744
MaeII	ACGT	2 cut(s)	893, 1076
MaeIII	GTNAC	4 cut(s)	423, 713, 739, 907
MflI	RGATCY	3 cut(s)	344, 881, 1057
MhlI	GDGCHC	1 cut(s)	631
MluCI	AATT	5 cut(s)	210, 339, 639, 705, 730
MlyI	GAGTC	1 cut(s)	1005
MroNI	GCCGGC	1 cut(s)	674
MseI	TTAA	2 cut(s)	408, 525
MslI	CAYNNNNRTG	2 cut(s)	117, 536
MspI	CCGG	6 cut(s)	137, 623, 675, 750, 825, 1004
MspR9I	CCNGG	5 cut(s)	138, 506, 624, 751, 825
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	2 cut(s)	285, 663
MwoI	GCNNNNNNNGC	1 cut(s)	410
NaeI	GCCGGC	1 cut(s)	676
NciI	CCSGG	4 cut(s)	138, 624, 751, 825
NcoI	CCATGG	1 cut(s)	1100
NdeI	CATATG	1 cut(s)	91
NgoMIV	GCCGGC	1 cut(s)	674
NlaIII	CATG	6 cut(s)	116, 574, 685, 695, 713, 1104
NmuCI	GTSAC	2 cut(s)	423, 713
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PdiI	GCCGGC	1 cut(s)	676
PfeI	GAWTC	1 cut(s)	611
PfoI	TCCNGGA	1 cut(s)	136
PleI	GAGTC	1 cut(s)	1005
PpsI	GAGTC	1 cut(s)	1005
Ppu21I	YACGTR	1 cut(s)	894
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspPI	GGNCC	2 cut(s)	600, 617
PstI	CTGCAG	2 cut(s)	248, 889
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	3 cut(s)	344, 881, 1057
RsaI	GTAC	3 cut(s)	656, 686, 748
RsaNI	GTAC	3 cut(s)	655, 685, 747
RseI	CAYNNNNRTG	2 cut(s)	117, 536
SaqAI	TTAA	2 cut(s)	408, 525
Sau96I	GGNCC	2 cut(s)	600, 617
ScaI	AGTACT	1 cut(s)	656
SchI	GAGTC	1 cut(s)	1005
ScrFI	CCNGG	5 cut(s)	138, 506, 624, 751, 825
SduI	GDGCHC	1 cut(s)	631
SfaNI	GCATC	2 cut(s)	520, 1105
SfcI	CTRYAG	2 cut(s)	244, 885
SinI	GGWCC	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	117, 536
SpeI	ACTAGT	2 cut(s)	238, 743
Sse9I	AATT	5 cut(s)	210, 339, 639, 705, 730
SsiI	CCGC	2 cut(s)	285, 1091
SspMI	CTAG	3 cut(s)	239, 648, 744
StyD4I	CCNGG	5 cut(s)	136, 504, 622, 749, 823
StyI	CCWWGG	1 cut(s)	1100
TaaI	ACNGT	3 cut(s)	385, 875, 1139
TaiI	ACGT	2 cut(s)	896, 1079
TaqI	TCGA	5 cut(s)	376, 387, 434, 579, 1038
TasI	AATT	5 cut(s)	210, 339, 639, 705, 730
TatI	WGTACW	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	2 cut(s)	408, 525
Tru9I	TTAA	2 cut(s)	408, 525
TscAI	CASTG	3 cut(s)	388, 781, 880
TseFI	GTSAC	2 cut(s)	423, 713
Tsp45I	GTSAC	2 cut(s)	423, 713
TspDTI	ATGAA	5 cut(s)	165, 309, 512, 680, 698
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	3 cut(s)	388, 781, 880
VpaK11BI	GGWCC	1 cut(s)	617
XapI	RAATTY	1 cut(s)	210
XspI	CTAG	3 cut(s)	239, 648, 744
ZrmI	AGTACT	1 cut(s)	656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.