Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009491.1

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Reverse (-)

14222 .. 14539

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009491.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

atgaccccacagttgaagaatttactcgaagggcttctgtgcaaagaccctgcaatgaggatgactttggaggaagttgcagatcatagttgggttgttggaaatgatgggagaatgcctcattatttatgctggtgcaagcggcgtcgcaagagtctgagtattagagaggaatctaatgggacaaaagatgactgtagcataacccatactgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

72

Amino Acids

8.32

Weight (kDa)

6.81

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	142
AcsI	RAATTY	1 cut(s)	19
AcyI	GRCGYC	1 cut(s)	145
AgsI	TTSAA	1 cut(s)	16
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	33
BccI	CCATC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	217
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BsaHI	GRCGYC	1 cut(s)	145
Bse3DI	GCAATG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	66
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	149
BslFI	GGGAC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	120
Bsp143I	GATC	1 cut(s)	82
BspACI	CCGC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	150
BsrDI	GCAATG	1 cut(s)	60
BssMI	GATC	1 cut(s)	82
BssNI	GRCGYC	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	12, 197
BstACI	GRCGYC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	158
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	82
BstSFI	CTRYAG	1 cut(s)	196
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	140
CseI	GACGC	1 cut(s)	134
CviJI	RGCY	1 cut(s)	34
CviKI_1	RGCY	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
FaiI	YATR	4 cut(s)	87, 130, 203, 210
FaqI	GGGAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	143
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	1 cut(s)	143
FspBI	CTAG	1 cut(s)	217
GluI	GCNGC	1 cut(s)	143
HgaI	GACGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	145
HinfI	GANTC	2 cut(s)	154, 173
Hpy188I	TCNGA	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	150
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	2 cut(s)	12, 197
HpyCH4V	TGCA	4 cut(s)	42, 53, 80, 138
HpyF3I	CTNAG	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	82
LpnPI	CCDG	2 cut(s)	63, 118
MaeI	CTAG	1 cut(s)	217
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	28
MluCI	AATT	1 cut(s)	19
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	4 cut(s)	51, 64, 129, 163
MroXI	GAANNNNTTC	1 cut(s)	33
Mva1269I	GAATGC	1 cut(s)	120
NdeII	GATC	1 cut(s)	82
PctI	GAATGC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	162
PpsI	GAGTC	1 cut(s)	162
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	1 cut(s)	82
SchI	GAGTC	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	196
SgeI	CNNG	5 cut(s)	38, 62, 145, 151, 163
Sse9I	AATT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	12, 197
TaqI	TCGA	1 cut(s)	27
TasI	AATT	1 cut(s)	19
TauI	GCSGC	1 cut(s)	145
TfiI	GAWTC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	33
XspI	CTAG	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.