Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Forward (+)

9702620 .. 9707935

Gene Structure 5316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g11150.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTTCCTTAAGAGTTCCTCTCTTGCTAGAATGATGGGCTGCTGCAGTTGCTTTGGCTTCATCAGAAAACCCAAGCGGAAACCAATGCCTAATTATGGATTTAATAATCACTGTTCCCAGGAGCTTTTGTTGGATGATGATATAGACAATGATGATGATGGTTCATATAATGGTGAGGTTACAAGAACTACTCACGCTGATGAAAGTGAGCCACAATGCTACGGTAATCGTTCTGAGGAGATTCTACACATCAGAGAACTGAATGGAATGATTTGTAGACCAAGCCCTGTGAAGGAAACCTGCAAAGTTGTTCGCACAGAGGATGAAAATGGGAATAAGATGGTCAATGAGTATGTTCGTGAGTGTAAGATTGGTGCAGGAAGCTATGGAAAAGTGGTTCTGTATCGAAGCCTTGTAGATGGACAGCATTATGCAATTAAGGCCTTTCATAAATCTCATTTATTAAAGCTTCGAGTTGCACCTTCAGAGACAGCTATGACAGATGTTCTTCGTGAGGTTCATATTATGAAAATGTTGCACCATCCTAACATAGTTAATCTCATTGAGGTGATTGACGACCCAGAAATAGATCATTTCTACATGGTTCTTGAATATGTTGAAGGCAAATGGGTTTGTGAGGGCTCTGGTCCACCAGGTGGCATAGAAGAACATACTGCAAGGAAGTACTTGCGGGATATAGTTTCAGGGCTAATGTACCTCCACGCTCATAATATAGTGCATGGCGATATCAAACCTGATAATCTGTTGGTTAGTCGCGATGGTACGGTGAAGATAGGGGATTTTAGTGTCAGTCAGGTTTTTGAGGATGATCATGACGAGCTGCGGCGATCTCCAGGAACTCCTGTTTTTACTGCACCTGAATGTTGTTTAGGGCTAACCTATCGCGGTAGAGCTGCTGACACATGGGCAGTAGGGGTTACTTTGTACTGTATGGTATTGGGACAATACCCATTCCTTGGAGACACACTTCAGGATACATATGACAAGATTGTTAATAACCCTTTAGTACTTCCAGATGATATGACCCCACCGTTAAAAGATTTACTTGAAGGTCTTCTTTGCAAAGACCCAAACATGAGGTTGACACTGGAGGCTGTCGCAGAGCATACTTGGGTTATTGGAGATGATGGGCCGATACCTCAGTATTCATGTTGGTGCAAGGGTAAGAGTTTGCGAGAGGAATCTAATGGGATGAAAGATGAGTGTAGCATAACCAATACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

416

Amino Acids

46.74

Weight (kDa)

5.24

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	308
AccB7I	CCANNNNNTGG	2 cut(s)	656, 977
AccI	GTMKAC	1 cut(s)	277
AccII	CGCG	2 cut(s)	777, 906
AciI	CCGC	4 cut(s)	76, 691, 844, 906
AcuI	CTGAAG	2 cut(s)	468, 974
AdeI	CACNNNGTG	1 cut(s)	656
AfaI	GTAC	5 cut(s)	686, 716, 784, 947, 1029
AfiI	CCNNNNNNNGG	4 cut(s)	95, 292, 656, 977
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	611, 620, 1070
AjnI	CCWGG	3 cut(s)	117, 652, 853
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	6 cut(s)	124, 384, 469, 494, 841, 914
AluI	AGCT	6 cut(s)	124, 384, 469, 494, 841, 914
Alw26I	GTCTC	2 cut(s)	482, 975
AoxI	GGCC	2 cut(s)	441, 1151
ApeKI	GCWGC	4 cut(s)	39, 42, 841, 914
Asp700I	GAANNNNTTC	1 cut(s)	1074
AspS9I	GGNCC	2 cut(s)	647, 1151
AsuHPI	GGTGA	3 cut(s)	185, 580, 799
AvaII	GGWCC	1 cut(s)	647
BaeI	ACNNNNGTAYC	2 cut(s)	1148, 1181
BanII	GRGCYC	1 cut(s)	644
BbsI	GAAGAC	1 cut(s)	1067
BbvI	GCAGC	4 cut(s)	26, 29, 828, 901
BccI	CCATC	7 cut(s)	28, 152, 334, 413, 549, 773, 1142
BciT130I	CCWGG	3 cut(s)	119, 654, 855
BciVI	GTATCC	1 cut(s)	988
BclI	TGATCA	1 cut(s)	829
BcoDI	GTCTC	2 cut(s)	482, 975
BfaI	CTAG	2 cut(s)	27, 1246
BfmI	CTRYAG	1 cut(s)	43
BfrI	CTTAAG	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	308
BfuI	GTATCC	1 cut(s)	988
BisI	GCNGC	5 cut(s)	40, 43, 842, 845, 915
BlsI	GCNGC	5 cut(s)	41, 44, 843, 846, 916
BmcAI	AGTACT	2 cut(s)	686, 1029
Bme1390I	CCNGG	3 cut(s)	119, 654, 855
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	647, 1151
BmrFI	CCNGG	3 cut(s)	119, 654, 855
BpiI	GAAGAC	1 cut(s)	1067
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	2 cut(s)	837, 1130
BsaJI	CCNNGG	2 cut(s)	117, 976
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 292, 656, 977
Bse1I	ACTGG	1 cut(s)	1113
BseBI	CCWGG	3 cut(s)	119, 654, 855
BseDI	CCNNGG	2 cut(s)	117, 976
BseGI	GGATG	5 cut(s)	139, 328, 541, 832, 1218
BseLI	CCNNNNNNNGG	4 cut(s)	95, 292, 656, 977
BseMII	CTCAG	2 cut(s)	225, 1175
BseNI	ACTGG	1 cut(s)	1113
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	4 cut(s)	26, 29, 828, 901
BsgI	GTGCAG	2 cut(s)	396, 858
Bsh1236I	CGCG	2 cut(s)	777, 906
BshFI	GGCC	2 cut(s)	443, 1153
BslFI	GGGAC	1 cut(s)	975
BslI	CCNNNNNNNGG	4 cut(s)	95, 292, 656, 977
BsmAI	GTCTC	2 cut(s)	482, 975
BsmFI	GGGAC	1 cut(s)	975
BsnI	GGCC	2 cut(s)	443, 1153
Bsp1286I	GDGCHC	1 cut(s)	644
Bsp143I	GATC	3 cut(s)	589, 829, 848
Bsp68I	TCGCGA	1 cut(s)	777
BspACI	CCGC	4 cut(s)	76, 691, 844, 906
BspANI	GGCC	2 cut(s)	443, 1153
BspCNI	CTCAG	2 cut(s)	226, 1174
BspFNI	CGCG	2 cut(s)	777, 906
BspHI	TCATGA	1 cut(s)	832
BspMAI	CTGCAG	1 cut(s)	47
BspMI	ACCTGC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	1113
BssECI	CCNNGG	2 cut(s)	117, 976
BssMI	GATC	3 cut(s)	589, 829, 848
BssT1I	CCWWGG	1 cut(s)	976
Bst2UI	CCWGG	3 cut(s)	119, 654, 855
Bst4CI	ACNGT	5 cut(s)	113, 224, 787, 950, 1053
BstAFI	CTTAAG	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	234, 1161
BstF5I	GGATG	5 cut(s)	139, 328, 541, 832, 1218
BstFNI	CGCG	2 cut(s)	777, 906
BstKTI	GATC	3 cut(s)	592, 832, 851
BstMAI	GTCTC	2 cut(s)	482, 975
BstMBI	GATC	3 cut(s)	589, 829, 848
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 440
BstNI	CCWGG	3 cut(s)	119, 654, 855
BstSCI	CCNGG	3 cut(s)	117, 652, 853
BstSFI	CTRYAG	1 cut(s)	43
BstUI	CGCG	2 cut(s)	777, 906
BstV1I	GCAGC	4 cut(s)	26, 29, 828, 901
BstV2I	GAAGAC	1 cut(s)	1067
BsuI	GTATCC	1 cut(s)	988
BsuRI	GGCC	2 cut(s)	443, 1153
BtgZI	GCGATG	1 cut(s)	792
BtsCI	GGATG	5 cut(s)	139, 328, 541, 832, 1218
BtsIMutI	CAGTG	2 cut(s)	109, 1106
BtuMI	TCGCGA	1 cut(s)	777
BveI	ACCTGC	1 cut(s)	308
CciI	TCATGA	1 cut(s)	832
Cfr13I	GGNCC	2 cut(s)	647, 1151
CsiI	ACCWGGT	1 cut(s)	652
Csp6I	GTAC	5 cut(s)	685, 715, 783, 946, 1028
CviAII	CATG	6 cut(s)	601, 740, 833, 924, 1096, 1170
CviQI	GTAC	5 cut(s)	685, 715, 783, 946, 1028
DdeI	CTNAG	2 cut(s)	234, 1161
DpnI	GATC	3 cut(s)	591, 831, 850
DpnII	GATC	3 cut(s)	589, 829, 848
DraIII	CACNNNGTG	1 cut(s)	656
Eco130I	CCWWGG	1 cut(s)	976
Eco147I	AGGCCT	1 cut(s)	443
Eco24I	GRGCYC	1 cut(s)	644
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	2 cut(s)	468, 974
EcoRII	CCWGG	3 cut(s)	117, 652, 853
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	976
EcoT38I	GRGCYC	1 cut(s)	644
ErhI	CCWWGG	1 cut(s)	976
FaeI	CATG	6 cut(s)	604, 743, 836, 927, 1099, 1173
FalI	AAGNNNNNCTT	4 cut(s)	1050, 1082, 1062, 1094
FaqI	GGGAC	1 cut(s)	975
FatI	CATG	6 cut(s)	600, 739, 832, 923, 1095, 1169
FauI	CCCGC	1 cut(s)	684
FauNDI	CATATG	1 cut(s)	1000
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	40, 43, 842, 845, 915
FokI	GGATG	5 cut(s)	146, 335, 528, 839, 1225
FriOI	GRGCYC	1 cut(s)	644
Fsp4HI	GCNGC	5 cut(s)	40, 43, 842, 845, 915
FspBI	CTAG	2 cut(s)	27, 1246
GluI	GCNGC	5 cut(s)	40, 43, 842, 845, 915
GsuI	CTGGAG	2 cut(s)	837, 1130
HaeIII	GGCC	2 cut(s)	443, 1153
Hin1II	CATG	6 cut(s)	604, 743, 836, 927, 1099, 1173
HincII	GTYRAC	1 cut(s)	1104
HindII	GTYRAC	1 cut(s)	1104
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	2 cut(s)	241, 1202
HphI	GGTGA	3 cut(s)	185, 580, 799
Hpy166II	GTNNAC	3 cut(s)	278, 650, 1104
Hpy188I	TCNGA	4 cut(s)	65, 235, 254, 487
Hpy188III	TCNNGA	7 cut(s)	359, 512, 608, 776, 833, 992, 1034
Hpy8I	GTNNAC	3 cut(s)	278, 650, 1104
HpyAV	CCTTC	4 cut(s)	286, 492, 614, 1064
HpyCH4III	ACNGT	5 cut(s)	113, 224, 787, 950, 1053
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 440
HpyF3I	CTNAG	2 cut(s)	234, 1161
Hsp92II	CATG	6 cut(s)	604, 743, 836, 927, 1099, 1173
Ksp22I	TGATCA	1 cut(s)	829
Kzo9I	GATC	3 cut(s)	589, 829, 848
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	4 cut(s)	26, 29, 828, 901
MabI	ACCWGGT	1 cut(s)	652
MaeI	CTAG	2 cut(s)	27, 1246
MaeIII	GTNAC	2 cut(s)	178, 937
MalI	GATC	3 cut(s)	591, 831, 850
MboI	GATC	3 cut(s)	589, 829, 848
MboII	GAAGA	4 cut(s)	500, 677, 802, 1067
MhlI	GDGCHC	1 cut(s)	644
MluCI	AATT	2 cut(s)	91, 435
MmeI	TCCRAC	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	1074
MseI	TTAA	7 cut(s)	9, 102, 438, 464, 555, 1014, 1055
MslI	CAYNNNNRTG	4 cut(s)	198, 566, 880, 1174
MspCI	CTTAAG	1 cut(s)	8
MspR9I	CCNGG	3 cut(s)	119, 654, 855
MvaI	CCWGG	3 cut(s)	119, 654, 855
MvnI	CGCG	2 cut(s)	777, 906
MwoI	GCNNNNNNNGC	2 cut(s)	48, 440
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	3 cut(s)	589, 829, 848
NlaIII	CATG	6 cut(s)	604, 743, 836, 927, 1099, 1173
NruI	TCGCGA	1 cut(s)	777
PagI	TCATGA	1 cut(s)	832
PceI	AGGCCT	1 cut(s)	443
PdmI	GAANNNNTTC	1 cut(s)	1074
PfeI	GAWTC	2 cut(s)	241, 1202
PflMI	CCANNNNNTGG	2 cut(s)	656, 977
PfoI	TCCNGGA	1 cut(s)	853
PkrI	GCNGC	5 cut(s)	41, 44, 843, 846, 916
Psp6I	CCWGG	3 cut(s)	117, 652, 853
PspGI	CCWGG	3 cut(s)	117, 652, 853
PspPI	GGNCC	2 cut(s)	647, 1151
PstI	CTGCAG	1 cut(s)	47
RruI	TCGCGA	1 cut(s)	777
RsaI	GTAC	5 cut(s)	686, 716, 784, 947, 1029
RsaNI	GTAC	5 cut(s)	685, 715, 783, 946, 1028
RseI	CAYNNNNRTG	4 cut(s)	198, 566, 880, 1174
SaqAI	TTAA	7 cut(s)	9, 102, 438, 464, 555, 1014, 1055
SatI	GCNGC	5 cut(s)	40, 43, 842, 845, 915
Sau3AI	GATC	3 cut(s)	589, 829, 848
Sau96I	GGNCC	2 cut(s)	647, 1151
ScaI	AGTACT	2 cut(s)	686, 1029
ScrFI	CCNGG	3 cut(s)	119, 654, 855
SduI	GDGCHC	1 cut(s)	644
SexAI	ACCWGGT	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	43
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	4 cut(s)	198, 566, 880, 1174
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
Sse9I	AATT	2 cut(s)	91, 435
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	4 cut(s)	76, 691, 844, 906
SspMI	CTAG	2 cut(s)	27, 1246
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	3 cut(s)	117, 652, 853
StyI	CCWWGG	1 cut(s)	976
TaaI	ACNGT	5 cut(s)	113, 224, 787, 950, 1053
TaqI	TCGA	2 cut(s)	406, 472
TasI	AATT	2 cut(s)	91, 435
TatI	WGTACW	3 cut(s)	684, 945, 1027
TauI	GCSGC	1 cut(s)	847
TfiI	GAWTC	2 cut(s)	241, 1202
Tru1I	TTAA	7 cut(s)	9, 102, 438, 464, 555, 1014, 1055
Tru9I	TTAA	7 cut(s)	9, 102, 438, 464, 555, 1014, 1055
TscAI	CASTG	2 cut(s)	116, 1113
TseI	GCWGC	4 cut(s)	39, 42, 841, 914
TspDTI	ATGAA	9 cut(s)	49, 153, 216, 339, 437, 509, 542, 1158, 1229
TspRI	CASTG	2 cut(s)	116, 1113
Van91I	CCANNNNNTGG	2 cut(s)	656, 977
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	647
XmiI	GTMKAC	1 cut(s)	277
XmnI	GAANNNNTTC	1 cut(s)	1074
XspI	CTAG	2 cut(s)	27, 1246
ZrmI	AGTACT	2 cut(s)	686, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.