Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Forward (+)

10368209 .. 10375774

Gene Structure 7566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1116200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGCATGACAACTATTTAGGTTATCCCAGAAAAAAAAAGGACTACCCATACAGCACTAATATAGTGCATGGTGATATCAAACCTGATAATCTGTTGGTTAGTCGCGATGGTACGGTGAAGATAGGGGATTTTAGTGTCAGCCAGGTTTTTGAGGATGACCATGACGAGCTGCGGCGATCACCGGGGACTCCTGTTTTTACTGCACCCGAATGTTGTTTAGGGCTAACCTATCGCGGTAGAGCTGCTGACACATGGGCCGTGGGGGTTACTTTGTACTGTATGGTATTGGGACAATACCCATTCCTTGGAGACACACTTCAGGATACATACGACAAGATTGTTAATAACCCTTTAGTACTTCCAGATGATATGAACCCACTTTTAAAGGATTTACTTGAAGGTCTTCTTTGCAAAGACCCAAACATGAGGTTGACACTGGAGGCTGTCGCAGAGCATACTTGGGTTATTGGAGATGATGGGCCGATACCTCAGTTTTCATGTTGGTGCAGGGGTAAGAGTTTGCGAGAGGAATCTAATGGGACGAAAGATGTCTCTAGCATAACCCTTACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

192

Amino Acids

21.37

Weight (kDa)

4.78

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	15 - 155	2.3e-30	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	18 - 151	1e-15	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccII	CGCG	2 cut(s)	105, 234
AciI	CCGC	2 cut(s)	172, 234
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	3 cut(s)	112, 275, 357
AfiI	CCNNNNNNNGG	1 cut(s)	305
AgsI	TTSAA	1 cut(s)	398
AjnI	CCWGG	1 cut(s)	141
AluBI	AGCT	2 cut(s)	169, 242
AluI	AGCT	2 cut(s)	169, 242
Alw26I	GTCTC	2 cut(s)	303, 556
AoxI	GGCC	2 cut(s)	255, 479
ApeKI	GCWGC	2 cut(s)	169, 242
Asp700I	GAANNNNTTC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	255, 479
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	3 cut(s)	83, 127, 171
BaeI	ACNNNNGTAYC	2 cut(s)	476, 509
BbsI	GAAGAC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	156, 229
BccI	CCATC	2 cut(s)	101, 470
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	2 cut(s)	303, 556
BfaI	CTAG	2 cut(s)	555, 574
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	3 cut(s)	170, 173, 243
BlsI	GCNGC	3 cut(s)	171, 174, 244
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	2 cut(s)	143, 183
BmgT120I	GGNCC	2 cut(s)	255, 479
BmrFI	CCNGG	2 cut(s)	143, 183
BpiI	GAAGAC	1 cut(s)	395
BpmI	CTGGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	182, 258, 304
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	441
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	3 cut(s)	182, 258, 304
BseGI	GGATG	1 cut(s)	160
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	1 cut(s)	503
BseNI	ACTGG	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	156, 229
BsgI	GTGCAG	2 cut(s)	186, 526
Bsh1236I	CGCG	2 cut(s)	105, 234
BshFI	GGCC	2 cut(s)	257, 481
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	3 cut(s)	199, 303, 553
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	303, 556
BsmFI	GGGAC	3 cut(s)	199, 303, 553
BsnI	GGCC	2 cut(s)	257, 481
Bsp143I	GATC	1 cut(s)	176
Bsp68I	TCGCGA	1 cut(s)	105
BspACI	CCGC	2 cut(s)	172, 234
BspANI	GGCC	2 cut(s)	257, 481
BspCNI	CTCAG	1 cut(s)	502
BspFNI	CGCG	2 cut(s)	105, 234
BsrI	ACTGG	1 cut(s)	441
BssECI	CCNNGG	3 cut(s)	182, 258, 304
BssMI	GATC	1 cut(s)	176
BssT1I	CCWWGG	1 cut(s)	304
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	2 cut(s)	115, 278
BstDEI	CTNAG	1 cut(s)	489
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	160
BstFNI	CGCG	2 cut(s)	105, 234
BstKTI	GATC	1 cut(s)	179
BstMAI	GTCTC	2 cut(s)	303, 556
BstMBI	GATC	1 cut(s)	176
BstNI	CCWGG	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	141, 181
BstUI	CGCG	2 cut(s)	105, 234
BstV1I	GCAGC	2 cut(s)	156, 229
BstV2I	GAAGAC	1 cut(s)	395
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	2 cut(s)	257, 481
BtgI	CCRYGG	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	434
BtuMI	TCGCGA	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	255, 479
Csp6I	GTAC	3 cut(s)	111, 274, 356
CviAII	CATG	6 cut(s)	5, 68, 161, 252, 424, 498
CviJI	RGCY	7 cut(s)	141, 169, 223, 242, 257, 443, 481
CviKI_1	RGCY	7 cut(s)	141, 169, 223, 242, 257, 443, 481
CviQI	GTAC	3 cut(s)	111, 274, 356
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	1 cut(s)	178
DpnII	GATC	1 cut(s)	176
DraI	TTTAAA	1 cut(s)	384
Eco130I	CCWWGG	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	141
EcoRV	GATATC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	304
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	304
FaeI	CATG	6 cut(s)	8, 71, 164, 255, 427, 501
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	3 cut(s)	199, 303, 553
FatI	CATG	6 cut(s)	4, 67, 160, 251, 423, 497
Fnu4HI	GCNGC	3 cut(s)	170, 173, 243
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	3 cut(s)	170, 173, 243
FspBI	CTAG	2 cut(s)	555, 574
GluI	GCNGC	3 cut(s)	170, 173, 243
GsuI	CTGGAG	1 cut(s)	458
HaeIII	GGCC	2 cut(s)	257, 481
HapII	CCGG	1 cut(s)	182
Hin1II	CATG	6 cut(s)	8, 71, 164, 255, 427, 501
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	187, 530
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	3 cut(s)	83, 127, 171
Hpy166II	GTNNAC	1 cut(s)	432
Hpy188III	TCNNGA	3 cut(s)	104, 320, 362
Hpy8I	GTNNAC	1 cut(s)	432
HpyAV	CCTTC	1 cut(s)	392
HpyCH4III	ACNGT	2 cut(s)	115, 278
HpyCH4V	TGCA	5 cut(s)	4, 67, 203, 411, 507
HpyF3I	CTNAG	1 cut(s)	489
Hsp92II	CATG	6 cut(s)	8, 71, 164, 255, 427, 501
Kzo9I	GATC	1 cut(s)	176
Lsp1109I	GCAGC	2 cut(s)	156, 229
MaeI	CTAG	2 cut(s)	555, 574
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	1 cut(s)	178
MboI	GATC	1 cut(s)	176
MboII	GAAGA	2 cut(s)	130, 395
MlyI	GAGTC	1 cut(s)	181
MnlI	CCTC	5 cut(s)	145, 420, 433, 498, 520
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	2 cut(s)	342, 383
MslI	CAYNNNNRTG	2 cut(s)	208, 502
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	143, 183
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	2 cut(s)	105, 234
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	176
NlaIII	CATG	6 cut(s)	8, 71, 164, 255, 427, 501
NruI	TCGCGA	1 cut(s)	105
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	530
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	171, 174, 244
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	141
PspGI	CCWGG	1 cut(s)	141
PspPI	GGNCC	2 cut(s)	255, 479
RruI	TCGCGA	1 cut(s)	105
RsaI	GTAC	3 cut(s)	112, 275, 357
RsaNI	GTAC	3 cut(s)	111, 274, 356
RseI	CAYNNNNRTG	2 cut(s)	208, 502
SaqAI	TTAA	2 cut(s)	342, 383
SatI	GCNGC	3 cut(s)	170, 173, 243
Sau3AI	GATC	1 cut(s)	176
Sau96I	GGNCC	2 cut(s)	255, 479
ScaI	AGTACT	1 cut(s)	357
SchI	GAGTC	1 cut(s)	181
ScrFI	CCNGG	2 cut(s)	143, 183
SetI	ASST	9 cut(s)	22, 85, 147, 171, 230, 244, 403, 431, 490
SmiMI	CAYNNNNRTG	2 cut(s)	208, 502
SsiI	CCGC	2 cut(s)	172, 234
SspMI	CTAG	2 cut(s)	555, 574
StyD4I	CCNGG	2 cut(s)	141, 181
StyI	CCWWGG	1 cut(s)	304
TaaI	ACNGT	2 cut(s)	115, 278
TatI	WGTACW	2 cut(s)	273, 355
TauI	GCSGC	1 cut(s)	175
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	342, 383
Tru9I	TTAA	2 cut(s)	342, 383
TscAI	CASTG	1 cut(s)	441
TseI	GCWGC	2 cut(s)	169, 242
TspDTI	ATGAA	2 cut(s)	386, 486
TspRI	CASTG	1 cut(s)	441
Van91I	CCANNNNNTGG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	2 cut(s)	555, 574
ZrmI	AGTACT	1 cut(s)	357
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.