Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015758.1

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Forward (+)

956 .. 3960

Gene Structure 3005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015758.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgttggaacatcctaacatagttaatctcattgaggtgattgacgacccagacgcagaccatttctacatggttcttgaatatgtggaaggcaaatgggtctgtgagggttctggtccaccaggcggcctaggagaatctactgcaagaaagtacctgcgggacatagttcgagggctaatgtacctccatgatcataacatagtacatggtgatatcaaacctgataatctgctggttagtagtaatggtacggtgaagattggggattttagcgtcagccaagtttttgaggatgataatgacgagctgcgccgatctccagggactcctgttttcactgcacctgaatgttgtttaggcctaacctatcatggtaaagctgctgacacatgggcagtgggggttactttgtactgtatggtattgggacaatacccattccttggagatactctgcaggatacatatgacaagattgttaataaccctttagtacttccagagaatatgaccccacagttgaagaatttactcgaagggcttctgtgcaaagaccctgcaatgaggatgactttggaggaagttgcagatcatagttgggttgttggaaatgatgggagaatgcctcattatttatgctggtgcaagcggcgtcgcaagagtctgagtattagagaggaatctaatgggacaaaagatgactgtagcataacccatactgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

242

Amino Acids

27.14

Weight (kDa)

4.92

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	446
AciI	CCGC	3 cut(s)	126, 160, 652
AcsI	RAATTY	1 cut(s)	529
AcyI	GRCGYC	1 cut(s)	655
AfaI	GTAC	6 cut(s)	155, 185, 207, 253, 416, 498
AfiI	CCNNNNNNNGG	2 cut(s)	125, 446
AgsI	TTSAA	2 cut(s)	80, 526
AjnI	CCWGG	2 cut(s)	121, 322
AluBI	AGCT	2 cut(s)	310, 383
AluI	AGCT	2 cut(s)	310, 383
AoxI	GGCC	2 cut(s)	127, 361
ApeKI	GCWGC	2 cut(s)	310, 383
ApoI	RAATTY	1 cut(s)	529
Asp700I	GAANNNNTTC	1 cut(s)	543
AspA2I	CCTAGG	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	3 cut(s)	49, 224, 268
AvaII	GGWCC	1 cut(s)	116
AvrII	CCTAGG	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	297, 370
BccI	CCATC	1 cut(s)	611
BciT130I	CCWGG	2 cut(s)	123, 324
BciVI	GTATCC	1 cut(s)	457
BclI	TGATCA	1 cut(s)	193
BfaI	CTAG	2 cut(s)	131, 727
BfmI	CTRYAG	2 cut(s)	458, 706
BfuAI	ACCTGC	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	457
BisI	GCNGC	4 cut(s)	127, 311, 384, 653
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	4 cut(s)	128, 312, 385, 654
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	2 cut(s)	123, 324
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmrFI	CCNGG	2 cut(s)	123, 324
BplI	GAGNNNNNCTC	2 cut(s)	613, 645
BpmI	CTGGAG	1 cut(s)	306
BsaHI	GRCGYC	1 cut(s)	655
BsaJI	CCNNGG	3 cut(s)	130, 323, 445
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 446
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	2 cut(s)	123, 324
BseDI	CCNNGG	3 cut(s)	130, 323, 445
BseGI	GGATG	3 cut(s)	10, 301, 576
BseLI	CCNNNNNNNGG	2 cut(s)	125, 446
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	659
BseXI	GCAGC	2 cut(s)	297, 370
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	129, 363
BslFI	GGGAC	4 cut(s)	176, 340, 444, 706
BslI	CCNNNNNNNGG	2 cut(s)	125, 446
BsmFI	GGGAC	4 cut(s)	176, 340, 444, 706
BsmI	GAATGC	1 cut(s)	630
BsnI	GGCC	2 cut(s)	129, 363
Bsp143I	GATC	3 cut(s)	193, 317, 592
BspACI	CCGC	3 cut(s)	126, 160, 652
BspANI	GGCC	2 cut(s)	129, 363
BspCNI	CTCAG	1 cut(s)	660
BspMAI	CTGCAG	1 cut(s)	462
BspMI	ACCTGC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	570
BssECI	CCNNGG	3 cut(s)	130, 323, 445
BssMI	GATC	3 cut(s)	193, 317, 592
BssNI	GRCGYC	1 cut(s)	655
BssT1I	CCWWGG	2 cut(s)	130, 445
Bst2UI	CCWGG	2 cut(s)	123, 324
Bst4CI	ACNGT	4 cut(s)	256, 419, 522, 707
BstACI	GRCGYC	1 cut(s)	655
BstC8I	GCNNGC	1 cut(s)	650
BstDEI	CTNAG	1 cut(s)	668
BstF5I	GGATG	3 cut(s)	10, 301, 576
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	3 cut(s)	196, 320, 595
BstMBI	GATC	3 cut(s)	193, 317, 592
BstNI	CCWGG	2 cut(s)	123, 324
BstSCI	CCNGG	2 cut(s)	121, 322
BstSFI	CTRYAG	2 cut(s)	458, 706
BstV1I	GCAGC	2 cut(s)	297, 370
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	2 cut(s)	129, 363
BtsCI	GGATG	3 cut(s)	10, 301, 576
BtsI	GCAGTG	2 cut(s)	339, 405
BtsIMutI	CAGTG	2 cut(s)	339, 405
BveI	ACCTGC	1 cut(s)	165
Cac8I	GCNNGC	1 cut(s)	650
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	116
CseI	GACGC	3 cut(s)	62, 265, 644
Csp6I	GTAC	6 cut(s)	154, 184, 206, 252, 415, 497
CviAII	CATG	5 cut(s)	70, 191, 209, 374, 393
CviJI	RGCY	7 cut(s)	129, 178, 282, 310, 363, 383, 544
CviKI_1	RGCY	7 cut(s)	129, 178, 282, 310, 363, 383, 544
CviQI	GTAC	6 cut(s)	154, 184, 206, 252, 415, 497
DdeI	CTNAG	1 cut(s)	668
DpnI	GATC	3 cut(s)	195, 319, 594
DpnII	GATC	3 cut(s)	193, 317, 592
Eco130I	CCWWGG	2 cut(s)	130, 445
Eco147I	AGGCCT	1 cut(s)	363
Eco32I	GATATC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	121, 322
EcoRV	GATATC	1 cut(s)	217
EcoT14I	CCWWGG	2 cut(s)	130, 445
ErhI	CCWWGG	2 cut(s)	130, 445
FaeI	CATG	5 cut(s)	73, 194, 212, 377, 396
FaqI	GGGAC	4 cut(s)	176, 340, 444, 706
FatI	CATG	5 cut(s)	69, 190, 208, 373, 392
FauI	CCCGC	1 cut(s)	153
FauNDI	CATATG	1 cut(s)	469
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	127, 311, 384, 653
FokI	GGATG	2 cut(s)	308, 583
Fsp4HI	GCNGC	4 cut(s)	127, 311, 384, 653
FspBI	CTAG	2 cut(s)	131, 727
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	4 cut(s)	127, 311, 384, 653
GsuI	CTGGAG	1 cut(s)	306
HaeIII	GGCC	2 cut(s)	129, 363
HgaI	GACGC	3 cut(s)	62, 265, 644
HhaI	GCGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	655
Hin1II	CATG	5 cut(s)	73, 194, 212, 377, 396
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HinfI	GANTC	4 cut(s)	137, 328, 664, 683
HphI	GGTGA	3 cut(s)	49, 224, 268
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	669
Hpy188III	TCNNGA	2 cut(s)	77, 503
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	660
HpyAV	CCTTC	2 cut(s)	83, 533
HpyCH4III	ACNGT	4 cut(s)	256, 419, 522, 707
HpyCH4V	TGCA	7 cut(s)	146, 344, 460, 552, 563, 590, 648
HpyF3I	CTNAG	1 cut(s)	668
Hsp92I	GRCGYC	1 cut(s)	655
Hsp92II	CATG	5 cut(s)	73, 194, 212, 377, 396
HspAI	GCGC	1 cut(s)	313
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	3 cut(s)	193, 317, 592
Lsp1109I	GCAGC	2 cut(s)	297, 370
MaeI	CTAG	2 cut(s)	131, 727
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	3 cut(s)	195, 319, 594
MboI	GATC	3 cut(s)	193, 317, 592
MboII	GAAGA	2 cut(s)	271, 538
MluCI	AATT	1 cut(s)	529
MlyI	GAGTC	2 cut(s)	322, 673
MmeI	TCCRAC	1 cut(s)	589
MnlI	CCTC	9 cut(s)	28, 100, 167, 197, 286, 561, 574, 639, 673
MroXI	GAANNNNTTC	1 cut(s)	543
MseI	TTAA	2 cut(s)	24, 483
MslI	CAYNNNNRTG	2 cut(s)	35, 349
MspR9I	CCNGG	2 cut(s)	123, 324
Mva1269I	GAATGC	1 cut(s)	630
MvaI	CCWGG	2 cut(s)	123, 324
NdeI	CATATG	1 cut(s)	469
NdeII	GATC	3 cut(s)	193, 317, 592
NlaIII	CATG	5 cut(s)	73, 194, 212, 377, 396
PceI	AGGCCT	1 cut(s)	363
PctI	GAATGC	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	543
PfeI	GAWTC	2 cut(s)	137, 683
PflMI	CCANNNNNTGG	1 cut(s)	446
PkrI	GCNGC	4 cut(s)	128, 312, 385, 654
PleI	GAGTC	2 cut(s)	322, 672
PpsI	GAGTC	2 cut(s)	322, 672
Psp6I	CCWGG	2 cut(s)	121, 322
PspGI	CCWGG	2 cut(s)	121, 322
PspPI	GGNCC	1 cut(s)	116
PstI	CTGCAG	1 cut(s)	462
RsaI	GTAC	6 cut(s)	155, 185, 207, 253, 416, 498
RsaNI	GTAC	6 cut(s)	154, 184, 206, 252, 415, 497
RseI	CAYNNNNRTG	2 cut(s)	35, 349
SaqAI	TTAA	2 cut(s)	24, 483
SatI	GCNGC	4 cut(s)	127, 311, 384, 653
Sau3AI	GATC	3 cut(s)	193, 317, 592
Sau96I	GGNCC	1 cut(s)	116
ScaI	AGTACT	1 cut(s)	498
SchI	GAGTC	2 cut(s)	322, 673
ScrFI	CCNGG	2 cut(s)	123, 324
SetI	ASST	8 cut(s)	39, 159, 189, 226, 312, 349, 371, 385
SfcI	CTRYAG	2 cut(s)	458, 706
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	35, 349
Sse9I	AATT	1 cut(s)	529
SseBI	AGGCCT	1 cut(s)	363
SsiI	CCGC	3 cut(s)	126, 160, 652
SspMI	CTAG	2 cut(s)	131, 727
StuI	AGGCCT	1 cut(s)	363
StyD4I	CCNGG	2 cut(s)	121, 322
StyI	CCWWGG	2 cut(s)	130, 445
TaaI	ACNGT	4 cut(s)	256, 419, 522, 707
TaqI	TCGA	2 cut(s)	172, 537
TasI	AATT	1 cut(s)	529
TatI	WGTACW	3 cut(s)	205, 414, 496
TauI	GCSGC	2 cut(s)	129, 655
TfiI	GAWTC	2 cut(s)	137, 683
Tru1I	TTAA	2 cut(s)	24, 483
Tru9I	TTAA	2 cut(s)	24, 483
TscAI	CASTG	2 cut(s)	346, 405
TseI	GCWGC	2 cut(s)	310, 383
TspRI	CASTG	2 cut(s)	346, 405
Van91I	CCANNNNNTGG	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	116
XapI	RAATTY	1 cut(s)	529
XmaJI	CCTAGG	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	543
XspI	CTAG	2 cut(s)	131, 727
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.