Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Reverse (-)

27835486 .. 27842720

Gene Structure 7235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g32550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGATCCATAAGAGTTTCTCTCTTGCTAGAATGATGGGATGCTGCAGTTGCTTTGGTTTCTCAATCGCTAGCAAACCCAAACCACAAAGGAAGCCCAGTTATAGCTATAGTAGTCACCCTTCACAGGAGCATTTGTTGGAAGATGATTTAGAAGATGATGATGATGATTGTTCATATAACGATGATGCTACAAGTATGGGTAATTCTGAGGTAAGTGAACAGCAAAGTCGTGCTAAACGTCCTGATGAAATACTGAGTTTCAGAGAACAGAATGGAATGATATGTAGGCAGTACCCTGTGAAGGAAACTCACAAAGTAATTCGTACTGAGGATGATGATGGAAATAAGATGGTCAATGAGTATGTTCGGGAGTGTAAGATTGGTTCTGGCAGTTATGGGAAAGTGGTTTTGTATCGAAGCCTTGTAGATGGAAAGCATTATGCACTGAAGGCATTTCATAAATCTCATTTATTAAAACTCCGGGTTGCACCTTCGGAGACAGCTATGACAGATGTGCTTCGTGAGGTTCTTATTATGAAAATGTTGGAGCATCCTAACATTGTTAATCTCATTGAGGTGATTGACGACCCAGACACAGATCATTTCTACATGGTTCTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTTCTGGTCCACCTGGCGGCTTAGGAGAATCTACTGCAAGAAAGTATCTGCGGGATATAGTTCGAGGGCTAATGTACCTCCATGATCATAACATAGTACACGGTGATATCAAACCTGATAATCTGCTGGTTAGTCATAATGGTACGGTGAAGATTGGGGATTTTAGCGTCAGCCAGGTTTTTGAGGATGATAATGATGAGCTACGTCGATCTCCAGGGACTCCTGTTTTCACTGCACCTGAATGTTGTTTAGGGCTAACTTATCGCGGTAAAGCTGCTGACACATGGGCAGTGGGGGTTACTTTGTACTGTATGGTATTGGGACAATACCCATTCCTTGGAGATACTCTGCAGGATACATATGACAAGATTGTTAATAACCCTTTAGTACTTCCAGAGAATATGATCCCACAGTTGAAGGATCTACTTGAAGGACTTCTTTGCAAAGACCCAGCATCACGGATGACTTTGGAGGAAGTCGCAGAACATAGTTGGGTTGTTGGAAATGATGGAAGAATGCCTCATTATTTATGCTGGTGCAAACGGCGTCGCAAGAGTTTGAGTATTAGAGAGGAATCTAATGGGATAAAAGATGACTGTAGCATAACCCACACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

423

Amino Acids

47.74

Weight (kDa)

5.42

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	121 - 382	1e-58	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	125 - 378	5.1e-32	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	227 - 333	1.2e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	986
AccII	CGCG	1 cut(s)	915
AciI	CCGC	3 cut(s)	666, 700, 915
AclWI	GGATC	2 cut(s)	1048, 1077
AcuI	CTGAAG	1 cut(s)	467
AcyI	GRCGYC	1 cut(s)	1195
AfaI	GTAC	7 cut(s)	293, 325, 725, 747, 793, 956, 1038
AfiI	CCNNNNNNNGG	4 cut(s)	124, 301, 665, 986
AgsI	TTSAA	3 cut(s)	620, 1066, 1079
AjnI	CCWGG	3 cut(s)	661, 822, 862
AluBI	AGCT	4 cut(s)	105, 503, 850, 923
AluI	AGCT	4 cut(s)	105, 503, 850, 923
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	2 cut(s)	1048, 1077
ApeKI	GCWGC	2 cut(s)	42, 923
Asp700I	GAANNNNTTC	1 cut(s)	1083
AspS9I	GGNCC	1 cut(s)	656
AsuC2I	CCSGG	1 cut(s)	482
AsuHPI	GGTGA	4 cut(s)	107, 589, 764, 808
AsuNHI	GCTAGC	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	656
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbvI	GCAGC	2 cut(s)	29, 910
BccI	CCATC	5 cut(s)	28, 332, 343, 422, 1151
BceAI	ACGGC	1 cut(s)	1208
BciT130I	CCWGG	3 cut(s)	663, 824, 864
BciVI	GTATCC	1 cut(s)	997
BclI	TGATCA	1 cut(s)	733
BcnI	CCSGG	1 cut(s)	482
BcoDI	GTCTC	1 cut(s)	491
BfaI	CTAG	3 cut(s)	27, 69, 1267
BfmI	CTRYAG	4 cut(s)	43, 106, 998, 1246
BfuI	GTATCC	1 cut(s)	997
BisI	GCNGC	3 cut(s)	43, 667, 924
BlsI	GCNGC	3 cut(s)	44, 668, 925
BmcAI	AGTACT	1 cut(s)	1038
Bme1390I	CCNGG	4 cut(s)	482, 663, 824, 864
Bme18I	GGWCC	1 cut(s)	656
BmgT120I	GGNCC	1 cut(s)	656
BmrFI	CCNGG	4 cut(s)	482, 663, 824, 864
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	4 cut(s)	29, 175, 559, 1112
BmtI	GCTAGC	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	90
BplI	GAGNNNNNCTC	1 cut(s)	36
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	1 cut(s)	670
BpuMI	CCSGG	1 cut(s)	482
BsaHI	GRCGYC	1 cut(s)	1195
BsaJI	CCNNGG	2 cut(s)	863, 985
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 301, 665, 986
Bse1I	ACTGG	1 cut(s)	96
BseBI	CCWGG	3 cut(s)	663, 824, 864
BseDI	CCNNGG	2 cut(s)	863, 985
BseGI	GGATG	5 cut(s)	44, 337, 550, 841, 1116
BseLI	CCNNNNNNNGG	4 cut(s)	124, 301, 665, 986
BseMII	CTCAG	3 cut(s)	198, 245, 318
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	29, 910
BseYI	CCCAGC	1 cut(s)	1099
BsgI	GTGCAG	1 cut(s)	867
Bsh1236I	CGCG	1 cut(s)	915
BsiSI	CCGG	1 cut(s)	481
BslFI	GGGAC	2 cut(s)	880, 984
BslI	CCNNNNNNNGG	4 cut(s)	124, 301, 665, 986
BsmAI	GTCTC	1 cut(s)	491
BsmFI	GGGAC	2 cut(s)	880, 984
BsmI	GAATGC	1 cut(s)	1170
Bsp143I	GATC	6 cut(s)	3, 598, 733, 857, 1053, 1069
BspACI	CCGC	3 cut(s)	666, 700, 915
BspCNI	CTCAG	3 cut(s)	199, 246, 319
BspFNI	CGCG	1 cut(s)	915
BspMAI	CTGCAG	2 cut(s)	47, 1002
BspOI	GCTAGC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	1048, 1077
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	2 cut(s)	863, 985
BssMI	GATC	6 cut(s)	3, 598, 733, 857, 1053, 1069
BssNI	GRCGYC	1 cut(s)	1195
BssT1I	CCWWGG	1 cut(s)	985
Bst2UI	CCWGG	3 cut(s)	663, 824, 864
Bst4CI	ACNGT	5 cut(s)	752, 796, 959, 1062, 1247
BstACI	GRCGYC	1 cut(s)	1195
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	4 cut(s)	207, 254, 327, 670
BstF5I	GGATG	5 cut(s)	44, 337, 550, 841, 1116
BstFNI	CGCG	1 cut(s)	915
BstKTI	GATC	6 cut(s)	6, 601, 736, 860, 1056, 1072
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	6 cut(s)	3, 598, 733, 857, 1053, 1069
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 449
BstNI	CCWGG	3 cut(s)	663, 824, 864
BstSCI	CCNGG	4 cut(s)	480, 661, 822, 862
BstSFI	CTRYAG	4 cut(s)	43, 106, 998, 1246
BstUI	CGCG	1 cut(s)	915
BstV1I	GCAGC	2 cut(s)	29, 910
BstX2I	RGATCY	1 cut(s)	1069
BstYI	RGATCY	1 cut(s)	1069
BsuI	GTATCC	1 cut(s)	997
BtsCI	GGATG	5 cut(s)	44, 337, 550, 841, 1116
BtsI	GCAGTG	2 cut(s)	879, 945
BtsIMutI	CAGTG	4 cut(s)	443, 879, 945, 1260
Cac8I	GCNNGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	656
CseI	GACGC	2 cut(s)	805, 1184
Csp6I	GTAC	7 cut(s)	292, 324, 724, 746, 792, 955, 1037
CviAII	CATG	3 cut(s)	610, 731, 933
CviQI	GTAC	7 cut(s)	292, 324, 724, 746, 792, 955, 1037
DdeI	CTNAG	4 cut(s)	207, 254, 327, 670
DpnI	GATC	6 cut(s)	5, 600, 735, 859, 1055, 1071
DpnII	GATC	6 cut(s)	3, 598, 733, 857, 1053, 1069
Eco130I	CCWWGG	1 cut(s)	985
Eco32I	GATATC	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	467
EcoRII	CCWGG	3 cut(s)	661, 822, 862
EcoRV	GATATC	1 cut(s)	757
EcoT14I	CCWWGG	1 cut(s)	985
ErhI	CCWWGG	1 cut(s)	985
FaeI	CATG	3 cut(s)	613, 734, 936
FalI	AAGNNNNNCTT	2 cut(s)	1071, 1103
FaqI	GGGAC	2 cut(s)	880, 984
FatI	CATG	3 cut(s)	609, 730, 932
FauI	CCCGC	1 cut(s)	693
FauNDI	CATATG	1 cut(s)	1009
FbaI	TGATCA	1 cut(s)	733
Fnu4HI	GCNGC	3 cut(s)	43, 667, 924
FokI	GGATG	5 cut(s)	51, 344, 537, 848, 1123
Fsp4HI	GCNGC	3 cut(s)	43, 667, 924
FspBI	CTAG	3 cut(s)	27, 69, 1267
GluI	GCNGC	3 cut(s)	43, 667, 924
GsaI	CCCAGC	1 cut(s)	1103
GsuI	CTGGAG	1 cut(s)	846
HapII	CCGG	1 cut(s)	481
HgaI	GACGC	2 cut(s)	805, 1184
Hin1I	GRCGYC	1 cut(s)	1195
Hin1II	CATG	3 cut(s)	613, 734, 936
HinfI	GANTC	3 cut(s)	677, 868, 1223
HpaII	CCGG	1 cut(s)	481
HphI	GGTGA	4 cut(s)	107, 589, 764, 808
Hpy166II	GTNNAC	3 cut(s)	218, 659, 748
Hpy188I	TCNGA	3 cut(s)	208, 263, 496
Hpy188III	TCNNGA	5 cut(s)	242, 368, 521, 617, 1043
Hpy8I	GTNNAC	3 cut(s)	218, 659, 748
Hpy99I	CGWCG	2 cut(s)	858, 1200
HpyAV	CCTTC	7 cut(s)	129, 295, 442, 501, 623, 1060, 1073
HpyCH4III	ACNGT	5 cut(s)	752, 796, 959, 1062, 1247
HpyCH4IV	ACGT	2 cut(s)	238, 853
HpyCH4V	TGCA	8 cut(s)	45, 443, 488, 686, 884, 1000, 1092, 1188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 449
HpyF3I	CTNAG	4 cut(s)	207, 254, 327, 670
HpySE526I	ACGT	2 cut(s)	238, 853
Hsp92I	GRCGYC	1 cut(s)	1195
Hsp92II	CATG	3 cut(s)	613, 734, 936
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	6 cut(s)	3, 598, 733, 857, 1053, 1069
LmnI	GCTCC	2 cut(s)	127, 547
Lsp1109I	GCAGC	2 cut(s)	29, 910
LweI	GCATC	4 cut(s)	29, 175, 559, 1112
MaeI	CTAG	3 cut(s)	27, 69, 1267
MaeII	ACGT	2 cut(s)	238, 853
MaeIII	GTNAC	2 cut(s)	113, 946
MalI	GATC	6 cut(s)	5, 600, 735, 859, 1055, 1071
MboI	GATC	6 cut(s)	3, 598, 733, 857, 1053, 1069
MboII	GAAGA	4 cut(s)	152, 164, 811, 1173
MflI	RGATCY	1 cut(s)	1069
MluCI	AATT	2 cut(s)	202, 318
MlyI	GAGTC	1 cut(s)	862
MmeI	TCCRAC	3 cut(s)	117, 525, 1129
MroXI	GAANNNNTTC	1 cut(s)	1083
MseI	TTAA	3 cut(s)	473, 564, 1023
MslI	CAYNNNNRTG	2 cut(s)	575, 889
MspI	CCGG	1 cut(s)	481
MspR9I	CCNGG	4 cut(s)	482, 663, 824, 864
Mva1269I	GAATGC	1 cut(s)	1170
MvaI	CCWGG	3 cut(s)	663, 824, 864
MvnI	CGCG	1 cut(s)	915
MwoI	GCNNNNNNNGC	2 cut(s)	48, 449
NciI	CCSGG	1 cut(s)	482
NdeI	CATATG	1 cut(s)	1009
NdeII	GATC	6 cut(s)	3, 598, 733, 857, 1053, 1069
NheI	GCTAGC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	613, 734, 936
NmuCI	GTSAC	1 cut(s)	113
PcsI	WCGNNNNNNNCGW	1 cut(s)	235
PctI	GAATGC	1 cut(s)	1170
PdmI	GAANNNNTTC	1 cut(s)	1083
PfeI	GAWTC	2 cut(s)	677, 1223
PflMI	CCANNNNNTGG	1 cut(s)	986
PkrI	GCNGC	3 cut(s)	44, 668, 925
PleI	GAGTC	1 cut(s)	862
PpsI	GAGTC	1 cut(s)	862
Psp6I	CCWGG	3 cut(s)	661, 822, 862
PspFI	CCCAGC	1 cut(s)	1099
PspGI	CCWGG	3 cut(s)	661, 822, 862
PspPI	GGNCC	1 cut(s)	656
PsrI	GAACNNNNNNTAC	2 cut(s)	367, 399
PstI	CTGCAG	2 cut(s)	47, 1002
PsuI	RGATCY	1 cut(s)	1069
RsaI	GTAC	7 cut(s)	293, 325, 725, 747, 793, 956, 1038
RsaNI	GTAC	7 cut(s)	292, 324, 724, 746, 792, 955, 1037
RseI	CAYNNNNRTG	2 cut(s)	575, 889
SaqAI	TTAA	3 cut(s)	473, 564, 1023
SatI	GCNGC	3 cut(s)	43, 667, 924
Sau3AI	GATC	6 cut(s)	3, 598, 733, 857, 1053, 1069
Sau96I	GGNCC	1 cut(s)	656
ScaI	AGTACT	1 cut(s)	1038
SchI	GAGTC	1 cut(s)	862
ScrFI	CCNGG	4 cut(s)	482, 663, 824, 864
SfaNI	GCATC	4 cut(s)	29, 175, 559, 1112
SfcI	CTRYAG	4 cut(s)	43, 106, 998, 1246
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	2 cut(s)	575, 889
Sse9I	AATT	2 cut(s)	202, 318
SsiI	CCGC	3 cut(s)	666, 700, 915
SspMI	CTAG	3 cut(s)	27, 69, 1267
StyD4I	CCNGG	4 cut(s)	480, 661, 822, 862
StyI	CCWWGG	1 cut(s)	985
TaaI	ACNGT	5 cut(s)	752, 796, 959, 1062, 1247
TaiI	ACGT	2 cut(s)	241, 856
TaqI	TCGA	3 cut(s)	415, 712, 856
TasI	AATT	2 cut(s)	202, 318
TatI	WGTACW	3 cut(s)	745, 954, 1036
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	2 cut(s)	677, 1223
Tru1I	TTAA	3 cut(s)	473, 564, 1023
Tru9I	TTAA	3 cut(s)	473, 564, 1023
TscAI	CASTG	4 cut(s)	450, 886, 945, 1267
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	2 cut(s)	42, 923
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	162, 261, 446, 551
TspGWI	ACGGA	1 cut(s)	1123
TspRI	CASTG	4 cut(s)	450, 886, 945, 1267
Van91I	CCANNNNNTGG	1 cut(s)	986
VpaK11BI	GGWCC	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	1083
XspI	CTAG	3 cut(s)	27, 69, 1267
ZrmI	AGTACT	1 cut(s)	1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.