Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Reverse (-)

58711521 .. 58718287

Gene Structure 6767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG424800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGATCCATAAGAGTGTCTGTATTGCTAGAATGATGGGATGCTGCAGTTGCTTTGGTTTCTCCATTGCTAGAAAGCCCAAACCGAAAAGGAAGCCTAGTTATAGCTATAGTAATCACCCTTCACAGGAGCATTTGTTGGATGATGATTTAGAAGATGATGATGATTGTTCATATAATGATGATGCTACAAGTATGGGCAATGCCGAAGAAAGTGCGCAGCAAAGTCGTGCCAAACGTCCTGATGAGATACTAAGTTTCAGAGAACAGAATGGAATGATTTGCAGGCAGTACCCTGTGAAGGAAACCCACAAAGTTGTTCGCACAGAGGATGATGATGGGAATAAGATGGTCAATGAGTACGTTCGGGAGTGTAAGATTGGTTCTGGCAGTTATGGGAAAGTGGTTTTGTATCGAAGCCTTGTAGATGGAAAGCATTATGCACTAAAGGCGTTTCATAAATCTCATTTATTAAAACTCCGGGTTGCACCTTCGGAGACAGCTATGACAGATGTTCTTCGTGAGGTTCTTATTATGAAAATGTTGGAACATCCTAACATAGTTAATCTCATTGAGGTGATTGACGACCCAGACACAGACCATTTCTACATGGTTCTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTTCTGGTCCACCAGGGGGCCTAGGAGAATCTACTGCAAGAAAGTACCTGCGGGACATAGTTCGAGGGCTAATGTATCTCCATGATCATAACATAGTACATGGTGATATCAAACCTGATAATCTGCTGGTTAGTAGTAATGGTACGGTGAAGATTGGGGATTTTAGCGTCAGCCAAGTTTTTGAGGATGATAATGACGAGCTGCGCCGATCTCCAGGGACTCCTGTTTTCACTGCACCTGAATGTTGTTTAGGCCTAACCTATCATGGTAAAGCTGCTGACACATGGGCAGTGGGGGTTACTTTGTACTGTATGGTATTGGGACAATACCCATTCCTTGGAGATACTCTGCAGGATACATATGACAAGATTGTTAATAACCCTTTAGTACTTCCAGAGAATATGACCCCACAGTTGAAGAATTTACTCGAAGGGCTTCTGTGCAAAGACCCTGCAATGAGGATGACTTTGGAGGAAGTTGCAGATCATAGTTGGGTTGTTGGAAATGATGGGAGAATGCCTCATTATTTATGCTGGTGCAAGCGGCGTCGCAAGAGTCTGAGTATTAGAGAGGAATCTAATGGGACAAAAGATGACTGTAGCATAACCCATACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

421

Amino Acids

47.55

Weight (kDa)

5.61

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	120 - 381	1.5e-58	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	124 - 376	4.4e-32	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	226 - 359	4.3e-07	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	702
AccB7I	CCANNNNNTGG	1 cut(s)	983
AciI	CCGC	2 cut(s)	697, 1189
AcsI	RAATTY	1 cut(s)	1066
AcyI	GRCGYC	1 cut(s)	1192
AfaI	GTAC	7 cut(s)	290, 359, 692, 744, 790, 953, 1035
AfiI	CCNNNNNNNGG	4 cut(s)	124, 298, 662, 983
AgsI	TTSAA	2 cut(s)	617, 1063
AjnI	CCWGG	2 cut(s)	658, 859
AluBI	AGCT	4 cut(s)	105, 500, 847, 920
AluI	AGCT	4 cut(s)	105, 500, 847, 920
Alw26I	GTCTC	1 cut(s)	488
AoxI	GGCC	2 cut(s)	664, 898
ApeKI	GCWGC	4 cut(s)	42, 217, 847, 920
ApoI	RAATTY	1 cut(s)	1066
Asp700I	GAANNNNTTC	1 cut(s)	1080
AspA2I	CCTAGG	1 cut(s)	667
AspLEI	GCGC	2 cut(s)	217, 852
AspS9I	GGNCC	2 cut(s)	653, 664
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	4 cut(s)	107, 586, 761, 805
AvaII	GGWCC	1 cut(s)	653
AvrII	CCTAGG	1 cut(s)	667
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbvI	GCAGC	4 cut(s)	29, 229, 834, 907
BccI	CCATC	5 cut(s)	28, 329, 340, 419, 1148
BcgI	CGANNNNNNTGC	4 cut(s)	194, 206, 228, 240
BciT130I	CCWGG	2 cut(s)	660, 861
BciVI	GTATCC	1 cut(s)	994
BclI	TGATCA	1 cut(s)	730
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	488
BfaI	CTAG	5 cut(s)	27, 69, 96, 668, 1264
BfmI	CTRYAG	4 cut(s)	43, 106, 995, 1243
BfuAI	ACCTGC	1 cut(s)	702
BfuI	GTATCC	1 cut(s)	994
BisI	GCNGC	5 cut(s)	43, 218, 848, 921, 1190
BlnI	CCTAGG	1 cut(s)	667
BlsI	GCNGC	5 cut(s)	44, 219, 849, 922, 1191
BmcAI	AGTACT	1 cut(s)	1035
Bme1390I	CCNGG	3 cut(s)	479, 660, 861
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	2 cut(s)	653, 664
BmiI	GGNNCC	1 cut(s)	665
BmrFI	CCNGG	3 cut(s)	479, 660, 861
BmsI	GCATC	2 cut(s)	29, 172
BplI	GAGNNNNNCTC	2 cut(s)	1150, 1182
BpmI	CTGGAG	1 cut(s)	843
BpuMI	CCSGG	1 cut(s)	479
BsaHI	GRCGYC	1 cut(s)	1192
BsaJI	CCNNGG	4 cut(s)	659, 667, 860, 982
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	4 cut(s)	124, 298, 662, 983
Bse3DI	GCAATG	3 cut(s)	63, 205, 1107
BseBI	CCWGG	2 cut(s)	660, 861
BseDI	CCNNGG	4 cut(s)	659, 667, 860, 982
BseGI	GGATG	6 cut(s)	44, 145, 334, 547, 838, 1113
BseLI	CCNNNNNNNGG	4 cut(s)	124, 298, 662, 983
BseMI	GCAATG	3 cut(s)	63, 205, 1107
BseMII	CTCAG	1 cut(s)	1196
BseXI	GCAGC	4 cut(s)	29, 229, 834, 907
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	2 cut(s)	666, 900
BsiSI	CCGG	1 cut(s)	478
BslFI	GGGAC	4 cut(s)	713, 877, 981, 1243
BslI	CCNNNNNNNGG	4 cut(s)	124, 298, 662, 983
BsmAI	GTCTC	1 cut(s)	488
BsmFI	GGGAC	4 cut(s)	713, 877, 981, 1243
BsmI	GAATGC	1 cut(s)	1167
BsnI	GGCC	2 cut(s)	666, 900
Bsp143I	GATC	4 cut(s)	3, 730, 854, 1129
BspACI	CCGC	2 cut(s)	697, 1189
BspANI	GGCC	2 cut(s)	666, 900
BspCNI	CTCAG	1 cut(s)	1197
BspLI	GGNNCC	1 cut(s)	665
BspMAI	CTGCAG	2 cut(s)	47, 999
BspMI	ACCTGC	1 cut(s)	702
BsrDI	GCAATG	3 cut(s)	63, 205, 1107
BssECI	CCNNGG	4 cut(s)	659, 667, 860, 982
BssMI	GATC	4 cut(s)	3, 730, 854, 1129
BssNI	GRCGYC	1 cut(s)	1192
BssT1I	CCWWGG	2 cut(s)	667, 982
Bst2UI	CCWGG	2 cut(s)	660, 861
Bst4CI	ACNGT	4 cut(s)	793, 956, 1059, 1244
BstACI	GRCGYC	1 cut(s)	1192
BstC8I	GCNNGC	2 cut(s)	284, 1187
BstDEI	CTNAG	2 cut(s)	251, 1205
BstF5I	GGATG	6 cut(s)	44, 145, 334, 547, 838, 1113
BstHHI	GCGC	2 cut(s)	217, 852
BstKTI	GATC	4 cut(s)	6, 733, 857, 1132
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	4 cut(s)	3, 730, 854, 1129
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 446
BstNI	CCWGG	2 cut(s)	660, 861
BstSCI	CCNGG	3 cut(s)	477, 658, 859
BstSFI	CTRYAG	4 cut(s)	43, 106, 995, 1243
BstV1I	GCAGC	4 cut(s)	29, 229, 834, 907
BsuI	GTATCC	1 cut(s)	994
BsuRI	GGCC	2 cut(s)	666, 900
BtsCI	GGATG	6 cut(s)	44, 145, 334, 547, 838, 1113
BtsI	GCAGTG	2 cut(s)	876, 942
BtsIMutI	CAGTG	2 cut(s)	876, 942
BveI	ACCTGC	1 cut(s)	702
Cac8I	GCNNGC	2 cut(s)	284, 1187
CfoI	GCGC	2 cut(s)	217, 852
Cfr13I	GGNCC	2 cut(s)	653, 664
CseI	GACGC	2 cut(s)	802, 1181
Csp6I	GTAC	7 cut(s)	289, 358, 691, 743, 789, 952, 1034
CviAII	CATG	5 cut(s)	607, 728, 746, 911, 930
CviQI	GTAC	7 cut(s)	289, 358, 691, 743, 789, 952, 1034
DdeI	CTNAG	2 cut(s)	251, 1205
DpnI	GATC	4 cut(s)	5, 732, 856, 1131
DpnII	GATC	4 cut(s)	3, 730, 854, 1129
Eco130I	CCWWGG	2 cut(s)	667, 982
Eco147I	AGGCCT	1 cut(s)	900
Eco32I	GATATC	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	653
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	658, 859
EcoRV	GATATC	1 cut(s)	754
EcoT14I	CCWWGG	2 cut(s)	667, 982
ErhI	CCWWGG	2 cut(s)	667, 982
FaeI	CATG	5 cut(s)	610, 731, 749, 914, 933
FaqI	GGGAC	4 cut(s)	713, 877, 981, 1243
FatI	CATG	5 cut(s)	606, 727, 745, 910, 929
FauI	CCCGC	1 cut(s)	690
FauNDI	CATATG	1 cut(s)	1006
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	5 cut(s)	43, 218, 848, 921, 1190
FokI	GGATG	6 cut(s)	51, 152, 341, 534, 845, 1120
Fsp4HI	GCNGC	5 cut(s)	43, 218, 848, 921, 1190
FspBI	CTAG	5 cut(s)	27, 69, 96, 668, 1264
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	2 cut(s)	216, 851
GluI	GCNGC	5 cut(s)	43, 218, 848, 921, 1190
GsuI	CTGGAG	1 cut(s)	843
HaeIII	GGCC	2 cut(s)	666, 900
HapII	CCGG	1 cut(s)	478
HgaI	GACGC	2 cut(s)	802, 1181
HhaI	GCGC	2 cut(s)	217, 852
Hin1I	GRCGYC	1 cut(s)	1192
Hin1II	CATG	5 cut(s)	610, 731, 749, 914, 933
Hin6I	GCGC	2 cut(s)	215, 850
HinP1I	GCGC	2 cut(s)	215, 850
HinfI	GANTC	4 cut(s)	674, 865, 1201, 1220
HpaII	CCGG	1 cut(s)	478
HphI	GGTGA	4 cut(s)	107, 586, 761, 805
Hpy166II	GTNNAC	1 cut(s)	656
Hpy188I	TCNGA	3 cut(s)	260, 493, 1206
Hpy188III	TCNNGA	5 cut(s)	239, 365, 518, 614, 1040
Hpy8I	GTNNAC	1 cut(s)	656
Hpy99I	CGWCG	1 cut(s)	1197
HpyAV	CCTTC	5 cut(s)	129, 292, 498, 620, 1070
HpyCH4III	ACNGT	4 cut(s)	793, 956, 1059, 1244
HpyCH4IV	ACGT	2 cut(s)	235, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 446
HpyF3I	CTNAG	2 cut(s)	251, 1205
HpySE526I	ACGT	2 cut(s)	235, 360
Hsp92I	GRCGYC	1 cut(s)	1192
Hsp92II	CATG	5 cut(s)	610, 731, 749, 914, 933
HspAI	GCGC	2 cut(s)	215, 850
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	4 cut(s)	3, 730, 854, 1129
LmnI	GCTCC	1 cut(s)	127
Lsp1109I	GCAGC	4 cut(s)	29, 229, 834, 907
LweI	GCATC	2 cut(s)	29, 172
MaeI	CTAG	5 cut(s)	27, 69, 96, 668, 1264
MaeII	ACGT	2 cut(s)	235, 360
MaeIII	GTNAC	1 cut(s)	943
MalI	GATC	4 cut(s)	5, 732, 856, 1131
MboI	GATC	4 cut(s)	3, 730, 854, 1129
MboII	GAAGA	5 cut(s)	164, 218, 506, 808, 1075
MluCI	AATT	1 cut(s)	1066
MlyI	GAGTC	2 cut(s)	859, 1210
MmeI	TCCRAC	3 cut(s)	117, 522, 1126
MroXI	GAANNNNTTC	1 cut(s)	1080
MseI	TTAA	3 cut(s)	470, 561, 1020
MslI	CAYNNNNRTG	3 cut(s)	12, 572, 886
MspI	CCGG	1 cut(s)	478
MspR9I	CCNGG	3 cut(s)	479, 660, 861
Mva1269I	GAATGC	1 cut(s)	1167
MvaI	CCWGG	2 cut(s)	660, 861
MwoI	GCNNNNNNNGC	2 cut(s)	48, 446
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	1006
NdeII	GATC	4 cut(s)	3, 730, 854, 1129
NlaIII	CATG	5 cut(s)	610, 731, 749, 914, 933
NlaIV	GGNNCC	1 cut(s)	665
NsbI	TGCGCA	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	1 cut(s)	232
PctI	GAATGC	1 cut(s)	1167
PdmI	GAANNNNTTC	1 cut(s)	1080
PfeI	GAWTC	2 cut(s)	674, 1220
PflMI	CCANNNNNTGG	1 cut(s)	983
PkrI	GCNGC	5 cut(s)	44, 219, 849, 922, 1191
PleI	GAGTC	2 cut(s)	859, 1209
PpsI	GAGTC	2 cut(s)	859, 1209
Psp6I	CCWGG	2 cut(s)	658, 859
PspGI	CCWGG	2 cut(s)	658, 859
PspN4I	GGNNCC	1 cut(s)	665
PspPI	GGNCC	2 cut(s)	653, 664
PsrI	GAACNNNNNNTAC	2 cut(s)	364, 396
PstI	CTGCAG	2 cut(s)	47, 999
RsaI	GTAC	7 cut(s)	290, 359, 692, 744, 790, 953, 1035
RsaNI	GTAC	7 cut(s)	289, 358, 691, 743, 789, 952, 1034
RseI	CAYNNNNRTG	3 cut(s)	12, 572, 886
SaqAI	TTAA	3 cut(s)	470, 561, 1020
SatI	GCNGC	5 cut(s)	43, 218, 848, 921, 1190
Sau3AI	GATC	4 cut(s)	3, 730, 854, 1129
Sau96I	GGNCC	2 cut(s)	653, 664
ScaI	AGTACT	1 cut(s)	1035
SchI	GAGTC	2 cut(s)	859, 1210
ScrFI	CCNGG	3 cut(s)	479, 660, 861
SfaNI	GCATC	2 cut(s)	29, 172
SfcI	CTRYAG	4 cut(s)	43, 106, 995, 1243
SinI	GGWCC	1 cut(s)	653
SmiMI	CAYNNNNRTG	3 cut(s)	12, 572, 886
Sse9I	AATT	1 cut(s)	1066
SseBI	AGGCCT	1 cut(s)	900
SsiI	CCGC	2 cut(s)	697, 1189
SspMI	CTAG	5 cut(s)	27, 69, 96, 668, 1264
StuI	AGGCCT	1 cut(s)	900
StyD4I	CCNGG	3 cut(s)	477, 658, 859
StyI	CCWWGG	2 cut(s)	667, 982
TaaI	ACNGT	4 cut(s)	793, 956, 1059, 1244
TaiI	ACGT	2 cut(s)	238, 363
TaqI	TCGA	3 cut(s)	412, 709, 1074
TasI	AATT	1 cut(s)	1066
TatI	WGTACW	3 cut(s)	742, 951, 1033
TauI	GCSGC	1 cut(s)	1192
TfiI	GAWTC	2 cut(s)	674, 1220
Tru1I	TTAA	3 cut(s)	470, 561, 1020
Tru9I	TTAA	3 cut(s)	470, 561, 1020
TscAI	CASTG	2 cut(s)	883, 942
TseI	GCWGC	4 cut(s)	42, 217, 847, 920
TspDTI	ATGAA	3 cut(s)	159, 443, 548
TspRI	CASTG	2 cut(s)	883, 942
Van91I	CCANNNNNTGG	1 cut(s)	983
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	1 cut(s)	1066
XmaJI	CCTAGG	1 cut(s)	667
XmnI	GAANNNNTTC	1 cut(s)	1080
XspI	CTAG	5 cut(s)	27, 69, 96, 668, 1264
ZrmI	AGTACT	1 cut(s)	1035

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.