Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Reverse (-)

64798823 .. 64806388

Gene Structure 7566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035312

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGCTTTTTGAATTCAAATTGAAGGAGATAGGTAACTGGGGAGGATTTGATTATAAGCTTATGAACGGGGTTCCGTCTCTCCTTCTCAGTGGGAAAGATTGGATTTTTATTGGGATTTTCCATCAACAAGGAGTCTGCATCTCTCTGAATACAGGACAAGGTCAACTTATTGTTGGTTGGGGTGGTGTGGCCCTCTCCCCTCCCTCTGTAAAATCAGGTTTTGGAAAAAAATTTGGTTTTGGTTGGGAGCTATATATGGGCAATGCTGAAGAAAGTGAGCAGCAAAGTCGTGCCAAACGTCCTGATGAGATATTAAGTTTCAGAGAACAGAATGGAATGATTTGCAGGCAGTACCCTGTGAAGGAAACCCACAAAGTTGTTCGCAGAGAGGATGATGATGGGAATAAGATGGTCAATGAGTACGTTCGGGAGTGTAAGATTGGTTCTGGCAGTTATGGGAAAGTGGTTCTGTATCGAAGCCTTGTAGATGGAAAGCATTATGCACTAAAGGCGTTTCATAAATCTCATTTATTAAAACTCCGGGTTGCACCTTCGGAGACAGCTATGACCGATGTTCTTCGTGAGGTTCTTATTATGAAAATGTTGGAACATCCTAACATAGTTAATCTCATTGAGGTGATTGACGACCCAGACACAGACCATTTCTACATGGTTCTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTTCTGGTCCACCAGGCGGCCTAGGAGAATCTACTGCAAGAAAGTACCTGCGGGACATAGTTCGAGGGCTAATGTACCTCCATGATCATAACATAGTACATGGTGATATCAAACCTGATAATCTGCTGGTTAGTAGTAATGGTACGGTGAAGATTGGGGATTTTAGCGTCAGCCAAGTTTTTGAGGATGATAATGACGAGCTGCGCCGATCTCCAGGGACTCCTGTTTTCACTGCACCTGAATGTTGTTTAGGCCTAACCTATCATGGTAAAGCTGCTGACACATGGGCAGTGGGGGTTACTTTGTACTGTTTGGTATTGGGACAATACCCATTCCTTGGAGATACTCTGCAGGATACATATGACAAGATTGTTAATAACCCTTTAGTACTTCCAGAGAATATGACCCCACAGTTGAAGAATTTACTTGAAGGGCTTCTGTGCAAAGACCCTGCAATGAGGATGACTTTGGAGGAAGTTGCAGATCATAGTTGGGTTGTTGGAAATGATGGGAGAATGCCTCATTATTTATGCTGGTGCAAGCGGCGTCGCAAGAGTCTGAGTATTAGAGAGGAGTCTAATGGGACAAAAGATGACTGTAGCATAACCCACACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

443

Amino Acids

49.73

Weight (kDa)

5.9

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	141 - 402	3.4e-58	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	145 - 397	6.9e-32	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	247 - 361	1.7e-06	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	765
AccB7I	CCANNNNNTGG	1 cut(s)	1046
AciI	CCGC	3 cut(s)	726, 760, 1252
AcsI	RAATTY	3 cut(s)	11, 230, 1129
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	1255
AfaI	GTAC	8 cut(s)	353, 422, 755, 785, 807, 853, 1016, 1098
AfiI	CCNNNNNNNGG	3 cut(s)	361, 725, 1046
AgsI	TTSAA	6 cut(s)	11, 16, 22, 680, 1126, 1139
AjnI	CCWGG	2 cut(s)	721, 922
AluBI	AGCT	5 cut(s)	58, 250, 563, 910, 983
AluI	AGCT	5 cut(s)	58, 250, 563, 910, 983
Alw26I	GTCTC	2 cut(s)	81, 551
AoxI	GGCC	3 cut(s)	189, 727, 961
ApeKI	GCWGC	3 cut(s)	280, 910, 983
ApoI	RAATTY	3 cut(s)	11, 230, 1129
Asp700I	GAANNNNTTC	1 cut(s)	1143
AspA2I	CCTAGG	1 cut(s)	730
AspLEI	GCGC	1 cut(s)	915
AspS9I	GGNCC	2 cut(s)	190, 716
AsuC2I	CCSGG	1 cut(s)	542
AsuHPI	GGTGA	3 cut(s)	649, 824, 868
AvaII	GGWCC	1 cut(s)	716
AvrII	CCTAGG	1 cut(s)	730
BbvI	GCAGC	3 cut(s)	292, 897, 970
BccI	CCATC	5 cut(s)	129, 392, 403, 482, 1211
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	723, 924
BciVI	GTATCC	1 cut(s)	1057
BclI	TGATCA	1 cut(s)	793
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	2 cut(s)	81, 551
BfaI	CTAG	2 cut(s)	731, 1327
BfmI	CTRYAG	2 cut(s)	1058, 1306
BfuAI	ACCTGC	1 cut(s)	765
BfuI	GTATCC	1 cut(s)	1057
BisI	GCNGC	5 cut(s)	281, 727, 911, 984, 1253
BlnI	CCTAGG	1 cut(s)	730
BlsI	GCNGC	5 cut(s)	282, 728, 912, 985, 1254
BmcAI	AGTACT	1 cut(s)	1098
Bme1390I	CCNGG	3 cut(s)	542, 723, 924
Bme18I	GGWCC	1 cut(s)	716
BmgT120I	GGNCC	2 cut(s)	190, 716
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	3 cut(s)	542, 723, 924
BmrI	ACTGGG	1 cut(s)	46
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	46
BplI	GAGNNNNNCTC	2 cut(s)	1213, 1245
BpmI	CTGGAG	1 cut(s)	906
BpuMI	CCSGG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	1255
BsaJI	CCNNGG	3 cut(s)	730, 923, 1045
Bsc4I	CCNNNNNNNGG	3 cut(s)	361, 725, 1046
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	2 cut(s)	268, 1170
BseBI	CCWGG	2 cut(s)	723, 924
BseDI	CCNNGG	3 cut(s)	730, 923, 1045
BseGI	GGATG	4 cut(s)	397, 610, 901, 1176
BseLI	CCNNNNNNNGG	3 cut(s)	361, 725, 1046
BseMI	GCAATG	2 cut(s)	268, 1170
BseMII	CTCAG	2 cut(s)	100, 1259
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	1295
BseXI	GCAGC	3 cut(s)	292, 897, 970
BsgI	GTGCAG	1 cut(s)	927
BshFI	GGCC	3 cut(s)	191, 729, 963
BsiSI	CCGG	1 cut(s)	541
BslFI	GGGAC	4 cut(s)	776, 940, 1044, 1306
BslI	CCNNNNNNNGG	3 cut(s)	361, 725, 1046
BsmAI	GTCTC	2 cut(s)	81, 551
BsmBI	CGTCTC	1 cut(s)	81
BsmFI	GGGAC	4 cut(s)	776, 940, 1044, 1306
BsmI	GAATGC	1 cut(s)	1230
BsnI	GGCC	3 cut(s)	191, 729, 963
Bsp143I	GATC	3 cut(s)	793, 917, 1192
BspACI	CCGC	3 cut(s)	726, 760, 1252
BspANI	GGCC	3 cut(s)	191, 729, 963
BspCNI	CTCAG	2 cut(s)	99, 1260
BspLI	GGNNCC	1 cut(s)	72
BspMAI	CTGCAG	1 cut(s)	1062
BspMI	ACCTGC	1 cut(s)	765
BsrDI	GCAATG	2 cut(s)	268, 1170
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	3 cut(s)	730, 923, 1045
BssMI	GATC	3 cut(s)	793, 917, 1192
BssNI	GRCGYC	1 cut(s)	1255
BssT1I	CCWWGG	2 cut(s)	730, 1045
Bst2UI	CCWGG	2 cut(s)	723, 924
Bst4CI	ACNGT	4 cut(s)	856, 1019, 1122, 1307
BstACI	GRCGYC	1 cut(s)	1255
BstC8I	GCNNGC	2 cut(s)	347, 1250
BstDEI	CTNAG	2 cut(s)	86, 1268
BstF5I	GGATG	4 cut(s)	397, 610, 901, 1176
BstHHI	GCGC	1 cut(s)	915
BstKTI	GATC	3 cut(s)	796, 920, 1195
BstMAI	GTCTC	2 cut(s)	81, 551
BstMBI	GATC	3 cut(s)	793, 917, 1192
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	2 cut(s)	723, 924
BstSCI	CCNGG	3 cut(s)	540, 721, 922
BstSFI	CTRYAG	2 cut(s)	1058, 1306
BstV1I	GCAGC	3 cut(s)	292, 897, 970
BsuI	GTATCC	1 cut(s)	1057
BsuRI	GGCC	3 cut(s)	191, 729, 963
BtsCI	GGATG	4 cut(s)	397, 610, 901, 1176
BtsI	GCAGTG	2 cut(s)	939, 1005
BtsIMutI	CAGTG	4 cut(s)	94, 939, 1005, 1320
BveI	ACCTGC	1 cut(s)	765
Cac8I	GCNNGC	2 cut(s)	347, 1250
CfoI	GCGC	1 cut(s)	915
Cfr13I	GGNCC	2 cut(s)	190, 716
CseI	GACGC	2 cut(s)	865, 1244
Csp6I	GTAC	8 cut(s)	352, 421, 754, 784, 806, 852, 1015, 1097
CviAII	CATG	5 cut(s)	670, 791, 809, 974, 993
CviQI	GTAC	8 cut(s)	352, 421, 754, 784, 806, 852, 1015, 1097
DdeI	CTNAG	2 cut(s)	86, 1268
DpnI	GATC	3 cut(s)	795, 919, 1194
DpnII	GATC	3 cut(s)	793, 917, 1192
Eco130I	CCWWGG	2 cut(s)	730, 1045
Eco147I	AGGCCT	1 cut(s)	963
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	1 cut(s)	716
Eco57I	CTGAAG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	11
EcoRII	CCWGG	2 cut(s)	721, 922
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	2 cut(s)	730, 1045
ErhI	CCWWGG	2 cut(s)	730, 1045
Esp3I	CGTCTC	1 cut(s)	81
FaeI	CATG	5 cut(s)	673, 794, 812, 977, 996
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FaqI	GGGAC	4 cut(s)	776, 940, 1044, 1306
FatI	CATG	5 cut(s)	669, 790, 808, 973, 992
FauI	CCCGC	1 cut(s)	753
FauNDI	CATATG	1 cut(s)	1069
FbaI	TGATCA	1 cut(s)	793
Fnu4HI	GCNGC	5 cut(s)	281, 727, 911, 984, 1253
FokI	GGATG	4 cut(s)	404, 597, 908, 1183
Fsp4HI	GCNGC	5 cut(s)	281, 727, 911, 984, 1253
FspBI	CTAG	2 cut(s)	731, 1327
GlaI	GCGC	1 cut(s)	914
GluI	GCNGC	5 cut(s)	281, 727, 911, 984, 1253
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	3 cut(s)	191, 729, 963
HapII	CCGG	1 cut(s)	541
HgaI	GACGC	2 cut(s)	865, 1244
HhaI	GCGC	1 cut(s)	915
Hin1I	GRCGYC	1 cut(s)	1255
Hin1II	CATG	5 cut(s)	673, 794, 812, 977, 996
Hin6I	GCGC	1 cut(s)	913
HinP1I	GCGC	1 cut(s)	913
HincII	GTYRAC	1 cut(s)	164
HindII	GTYRAC	1 cut(s)	164
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	5 cut(s)	132, 737, 928, 1264, 1283
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	3 cut(s)	649, 824, 868
Hpy166II	GTNNAC	2 cut(s)	164, 719
Hpy188I	TCNGA	4 cut(s)	147, 323, 556, 1269
Hpy188III	TCNNGA	5 cut(s)	302, 428, 581, 677, 1103
Hpy8I	GTNNAC	2 cut(s)	164, 719
Hpy99I	CGWCG	1 cut(s)	1260
HpyAV	CCTTC	6 cut(s)	16, 92, 355, 561, 683, 1133
HpyCH4III	ACNGT	4 cut(s)	856, 1019, 1122, 1307
HpyCH4IV	ACGT	2 cut(s)	298, 423
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	2 cut(s)	86, 1268
HpySE526I	ACGT	2 cut(s)	298, 423
Hsp92I	GRCGYC	1 cut(s)	1255
Hsp92II	CATG	5 cut(s)	673, 794, 812, 977, 996
HspAI	GCGC	1 cut(s)	913
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	3 cut(s)	793, 917, 1192
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	292, 897, 970
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	731, 1327
MaeII	ACGT	2 cut(s)	298, 423
MaeIII	GTNAC	2 cut(s)	32, 1006
MalI	GATC	3 cut(s)	795, 919, 1194
MboI	GATC	3 cut(s)	793, 917, 1192
MboII	GAAGA	4 cut(s)	281, 569, 871, 1138
MluCI	AATT	4 cut(s)	11, 17, 230, 1129
MlyI	GAGTC	4 cut(s)	141, 922, 1273, 1292
MmeI	TCCRAC	2 cut(s)	585, 1189
MroXI	GAANNNNTTC	1 cut(s)	1143
MseI	TTAA	4 cut(s)	314, 533, 624, 1083
MslI	CAYNNNNRTG	2 cut(s)	635, 949
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	3 cut(s)	542, 723, 924
Mva1269I	GAATGC	1 cut(s)	1230
MvaI	CCWGG	2 cut(s)	723, 924
MwoI	GCNNNNNNNGC	1 cut(s)	509
NciI	CCSGG	1 cut(s)	542
NdeI	CATATG	1 cut(s)	1069
NdeII	GATC	3 cut(s)	793, 917, 1192
NlaIII	CATG	5 cut(s)	673, 794, 812, 977, 996
NlaIV	GGNNCC	1 cut(s)	72
PceI	AGGCCT	1 cut(s)	963
PcsI	WCGNNNNNNNCGW	1 cut(s)	295
PctI	GAATGC	1 cut(s)	1230
PdmI	GAANNNNTTC	1 cut(s)	1143
PfeI	GAWTC	1 cut(s)	737
PflFI	GACNNNGTC	1 cut(s)	159
PflMI	CCANNNNNTGG	1 cut(s)	1046
PkrI	GCNGC	5 cut(s)	282, 728, 912, 985, 1254
PleI	GAGTC	4 cut(s)	140, 922, 1272, 1291
PpsI	GAGTC	4 cut(s)	140, 922, 1272, 1291
PsiI	TTATAA	1 cut(s)	54
Psp6I	CCWGG	2 cut(s)	721, 922
PspGI	CCWGG	2 cut(s)	721, 922
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	190, 716
PsrI	GAACNNNNNNTAC	2 cut(s)	427, 459
PstI	CTGCAG	1 cut(s)	1062
PsyI	GACNNNGTC	1 cut(s)	159
RsaI	GTAC	8 cut(s)	353, 422, 755, 785, 807, 853, 1016, 1098
RsaNI	GTAC	8 cut(s)	352, 421, 754, 784, 806, 852, 1015, 1097
RseI	CAYNNNNRTG	2 cut(s)	635, 949
SaqAI	TTAA	4 cut(s)	314, 533, 624, 1083
SatI	GCNGC	5 cut(s)	281, 727, 911, 984, 1253
Sau3AI	GATC	3 cut(s)	793, 917, 1192
Sau96I	GGNCC	2 cut(s)	190, 716
ScaI	AGTACT	1 cut(s)	1098
SchI	GAGTC	4 cut(s)	141, 922, 1273, 1292
ScrFI	CCNGG	3 cut(s)	542, 723, 924
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	2 cut(s)	1058, 1306
SinI	GGWCC	1 cut(s)	716
SmiMI	CAYNNNNRTG	2 cut(s)	635, 949
Sse9I	AATT	4 cut(s)	11, 17, 230, 1129
SseBI	AGGCCT	1 cut(s)	963
SsiI	CCGC	3 cut(s)	726, 760, 1252
SspMI	CTAG	2 cut(s)	731, 1327
StuI	AGGCCT	1 cut(s)	963
StyD4I	CCNGG	3 cut(s)	540, 721, 922
StyI	CCWWGG	2 cut(s)	730, 1045
TaaI	ACNGT	4 cut(s)	856, 1019, 1122, 1307
TaiI	ACGT	2 cut(s)	301, 426
TaqI	TCGA	2 cut(s)	475, 772
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	4 cut(s)	11, 17, 230, 1129
TatI	WGTACW	3 cut(s)	805, 1014, 1096
TauI	GCSGC	2 cut(s)	729, 1255
TfiI	GAWTC	1 cut(s)	737
Tru1I	TTAA	4 cut(s)	314, 533, 624, 1083
Tru9I	TTAA	4 cut(s)	314, 533, 624, 1083
TscAI	CASTG	4 cut(s)	94, 946, 1005, 1327
TseI	GCWGC	3 cut(s)	280, 910, 983
TspDTI	ATGAA	3 cut(s)	77, 506, 611
TspGWI	ACGGA	1 cut(s)	63
TspRI	CASTG	4 cut(s)	94, 946, 1005, 1327
Tth111I	GACNNNGTC	1 cut(s)	159
Van91I	CCANNNNNTGG	1 cut(s)	1046
VpaK11BI	GGWCC	1 cut(s)	716
XapI	RAATTY	3 cut(s)	11, 230, 1129
XmaJI	CCTAGG	1 cut(s)	730
XmnI	GAANNNNTTC	1 cut(s)	1143
XspI	CTAG	2 cut(s)	731, 1327
ZrmI	AGTACT	1 cut(s)	1098

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.