Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Forward (+)

38862773 .. 38866632

Gene Structure 3860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0323700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCATCAAGGTTGGCTGCAAGGTTTTTCTCTCGGAGGATGTCAAGCAGTGGAAAGATACTGAGCGAGGAGGAAAAAGCTGCAGAAAATGTTTACATCAAGAAAAAGGAGCAAGAGAAGCTTGAGGAGCTTGCACGAAAGGGCCCTAAACCAGAAGACAAAGCAACTGCAGGCCCGGGGGAATCGATAACTGATGCCAAACCAAGTGATTCGAGCTCAACTGCCAAAGTATCAACTGACAAGTACAGGAATTATGCTGTTGTAGCTGGTGTTATGACTGCTGCTGCTGCTCTGGGATGGTATATCAAAGGAAGTGAAAAGAAGGCAGAAGTGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

113

Amino Acids

12.26

Weight (kDa)

9.27

Isoelectric Point (pI)

49.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	245
AluBI	AGCT	5 cut(s)	80, 121, 130, 216, 266
AluI	AGCT	5 cut(s)	80, 121, 130, 216, 266
Alw21I	GWGCWC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	142, 172
ApaI	GGGCCC	1 cut(s)	146
ApeKI	GCWGC	5 cut(s)	17, 80, 281, 284, 287
AspS9I	GGNCC	3 cut(s)	142, 143, 173
AsuC2I	CCSGG	2 cut(s)	176, 177
AvaI	CYCGRG	1 cut(s)	175
BaeGI	GKGCMC	1 cut(s)	146
BanII	GRGCYC	2 cut(s)	146, 218
BbsI	GAAGAC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	5 cut(s)	4, 67, 268, 271, 274
BccI	CCATC	1 cut(s)	291
BcnI	CCSGG	2 cut(s)	176, 177
BfmI	CTRYAG	2 cut(s)	81, 168
BisI	GCNGC	5 cut(s)	18, 81, 282, 285, 288
BlsI	GCNGC	5 cut(s)	19, 82, 283, 286, 289
Bme1390I	CCNGG	2 cut(s)	176, 177
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	3 cut(s)	142, 143, 173
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	176, 177
BmsI	GCATC	2 cut(s)	14, 184
BpiI	GAAGAC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	176, 177
Bsa29I	ATCGAT	1 cut(s)	185
BsaJI	CCNNGG	2 cut(s)	175, 176
BseCI	ATCGAT	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	175, 176
BseGI	GGATG	2 cut(s)	45, 302
BseMII	CTCAG	1 cut(s)	53
BseRI	GAGGAG	2 cut(s)	83, 140
BseSI	GKGCMC	1 cut(s)	146
BseXI	GCAGC	5 cut(s)	4, 67, 268, 271, 274
BshFI	GGCC	2 cut(s)	144, 174
BshVI	ATCGAT	1 cut(s)	185
BsiHKAI	GWGCWC	1 cut(s)	218
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	1 cut(s)	176
BsnI	GGCC	2 cut(s)	144, 174
BsoBI	CYCGRG	1 cut(s)	175
Bsp120I	GGGCCC	1 cut(s)	142
Bsp1286I	GDGCHC	2 cut(s)	146, 218
BspANI	GGCC	2 cut(s)	144, 174
BspCNI	CTCAG	1 cut(s)	54
BspDI	ATCGAT	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	2 cut(s)	85, 172
BssECI	CCNNGG	2 cut(s)	175, 176
BstC8I	GCNNGC	2 cut(s)	132, 172
BstDEI	CTNAG	1 cut(s)	62
BstF5I	GGATG	2 cut(s)	45, 302
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 127, 263, 287
BstSCI	CCNGG	2 cut(s)	174, 175
BstSFI	CTRYAG	2 cut(s)	81, 168
BstSLI	GKGCMC	1 cut(s)	146
BstV1I	GCAGC	5 cut(s)	4, 67, 268, 271, 274
BstV2I	GAAGAC	1 cut(s)	162
Bsu15I	ATCGAT	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	144, 174
BsuTUI	ATCGAT	1 cut(s)	185
BtsCI	GGATG	2 cut(s)	45, 302
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	1 cut(s)	55
Cac8I	GCNNGC	2 cut(s)	132, 172
Cfr13I	GGNCC	3 cut(s)	142, 143, 173
Cfr9I	CCCGGG	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	185
Csp6I	GTAC	1 cut(s)	244
CviJI	RGCY	8 cut(s)	17, 80, 121, 130, 144, 174, 216, 266
CviKI_1	RGCY	8 cut(s)	17, 80, 121, 130, 144, 174, 216, 266
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	1 cut(s)	62
Ecl136II	GAGCTC	1 cut(s)	216
Eco24I	GRGCYC	2 cut(s)	146, 218
Eco53kI	GAGCTC	1 cut(s)	216
Eco88I	CYCGRG	1 cut(s)	175
EcoICRI	GAGCTC	1 cut(s)	216
EcoO109I	RGGNCCY	2 cut(s)	142, 143
EcoT38I	GRGCYC	2 cut(s)	146, 218
FaiI	YATR	3 cut(s)	255, 275, 303
FalI	AAGNNNNNCTT	2 cut(s)	105, 137
Fnu4HI	GCNGC	5 cut(s)	18, 81, 282, 285, 288
FokI	GGATG	2 cut(s)	52, 309
FriOI	GRGCYC	2 cut(s)	146, 218
Fsp4HI	GCNGC	5 cut(s)	18, 81, 282, 285, 288
GluI	GCNGC	5 cut(s)	18, 81, 282, 285, 288
HaeIII	GGCC	2 cut(s)	144, 174
HapII	CCGG	1 cut(s)	176
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	182, 209
HpaII	CCGG	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	1 cut(s)	316
HpyCH4V	TGCA	5 cut(s)	20, 83, 134, 170, 334
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 127, 263, 287
HpyF3I	CTNAG	1 cut(s)	62
LmnI	GCTCC	2 cut(s)	109, 127
LpnPI	CCDG	7 cut(s)	156, 165, 189, 232, 252, 278, 320
Lsp1109I	GCAGC	5 cut(s)	4, 67, 268, 271, 274
LweI	GCATC	2 cut(s)	14, 184
MboII	GAAGA	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	146, 218
MluCI	AATT	1 cut(s)	250
MnlI	CCTC	4 cut(s)	30, 61, 64, 118
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	2 cut(s)	176, 177
MwoI	GCNNNNNNNGC	4 cut(s)	118, 127, 263, 287
NciI	CCSGG	2 cut(s)	176, 177
NlaIV	GGNNCC	1 cut(s)	144
PfeI	GAWTC	2 cut(s)	182, 209
PkrI	GCNGC	5 cut(s)	19, 82, 283, 286, 289
Psp124BI	GAGCTC	1 cut(s)	218
PspN4I	GGNNCC	1 cut(s)	144
PspOMI	GGGCCC	1 cut(s)	142
PspPI	GGNCC	3 cut(s)	142, 143, 173
PstI	CTGCAG	2 cut(s)	85, 172
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	218
SatI	GCNGC	5 cut(s)	18, 81, 282, 285, 288
Sau96I	GGNCC	3 cut(s)	142, 143, 173
ScrFI	CCNGG	2 cut(s)	176, 177
SduI	GDGCHC	2 cut(s)	146, 218
SetI	ASST	7 cut(s)	14, 26, 82, 123, 132, 218, 268
SfaNI	GCATC	2 cut(s)	14, 184
SfcI	CTRYAG	2 cut(s)	81, 168
SmaI	CCCGGG	1 cut(s)	177
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	1 cut(s)	250
SstI	GAGCTC	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	174, 175
TaqI	TCGA	2 cut(s)	185, 212
TasI	AATT	1 cut(s)	250
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	182, 209
TscAI	CASTG	1 cut(s)	55
TseI	GCWGC	5 cut(s)	17, 80, 281, 284, 287
TspMI	CCCGGG	1 cut(s)	175
TspRI	CASTG	1 cut(s)	55
XmaI	CCCGGG	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.