AT5G60550
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
24339229 .. 24342590
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60550.1

Sequence Viewer

Length: 1224 bp
ATGTTTCGTGATAGTTTTTTGTTTGCCCGTACCATCGGTTGCTTTGGATGCTTTGGCAGTTCTGGTAGTAGAAACCAACAATCGCCTAAGCCCTACGATGATGATACACATTCCTGTGATAGTGATGTAACTAGCACTGCAAGAGGAGAAGAAGAAGAAGATGAAGAAGAAGTAGAGCAGAAGAGCCGCTCTAAACGATCTGAGGAAATTTTGAAATATAGATTAGATAATGGATTAATCTGCAGACACATTCCAGTGAGAGAAACTAATGAACTTATACGTGGAGAGGATGAAAATGGTGACAAGACAATCAATGAGTATGTTCGCGTGTGTAAAATTGGATCCGGTAGCTATGGTAAAGTGGTTTTATATCGAAGCACTTTAGACGGCCAGTATTATGCTATCAAGGCATTTCACAAGTCGCATTTATTAAGGCTAAGGGTGGCACCGTCAGAGACTGCTATGAGTGATGTTCTTCGTGAGGTTATGATTATGAAAATTTTGGAGCATCCTAACATCGTTAACCTCATTGAGGTGATAGATGACCCTGAAACTGATCATTTTTACATGGTTCTTGAATACGTTGATGGAAAATGGGTGTATGACGGTTCTGGACCGCCGGGTGCTCTCGGAGAGAAAACTGCTAGAAAGTATTTGCGGGATATTGTTACTGGACTGATGTATCTTCATGCTCATGATGTTATTCACGGGGACATTAAACCCGACAATTTGCTGGTTACTAGTAGCGGTACAGTGAAGATAGGAGATTTCAGTGTCAGCCAAGTTTTCAAGGATGATGACGATCAGCTGCGCCGATCTCCCGGGACTCCTGTCTTCACTGCTCCAGAATGTTGTTTAGTATCAGGTATAACGTATAGTGGCAGAGCTGCGGATACATGGGCAGTGGGAGTTACATTGTATTGTATGATATTGGGACAATACCCGTTTCTTGCGGATACTCTTCAGGACACCTACGACAAGATTGTTAACAACCCTCTGATAATCCCGGATGGATTGAATCCTCTTCTCAGAGATTTGATCGAAGGTCTCCTTTGCAAAGATCCGAGCCAGAGAATGACACTGAAGAATGTGTCGGAGCATCCATGGGTCATTGGAGAAGACGGGCATGTCCCGGAGTATTTTTGTTGGTGCAAACGCAATGCTGCCTCAAAGATTGAAGAAGGAGAAGCTAATGGGATCTCTGAAACCTCAGATCCTAACTAA

Protein Analysis

407

Amino Acids

45.65

Weight (kDa)

4.93

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 107 - 370 9.9e-57 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 111 - 366 1.2e-29 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 215 - 347 7.3e-07 Kinase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1127
AccB1I GGYRCC 1 cut(s) 445
AccBSI CCGCTC 1 cut(s) 189
AccII CGCG 1 cut(s) 327
AciI CCGC 6 cut(s) 187, 617, 658, 747, 890, 953
AclWI GGATC 5 cut(s) 336, 349, 1055, 1205, 1208
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 2 cut(s) 207, 498
AcuI CTGAAG 2 cut(s) 947, 1103
AfaI GTAC 2 cut(s) 31, 751
AfiI CCNNNNNNNGG 1 cut(s) 532
AgsI TTSAA 5 cut(s) 214, 578, 790, 1018, 1178
AhlI ACTAGT 1 cut(s) 740
AluBI AGCT 4 cut(s) 351, 808, 887, 1190
AluI AGCT 4 cut(s) 351, 808, 887, 1190
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 2 cut(s) 449, 1052
AlwI GGATC 5 cut(s) 336, 349, 1055, 1205, 1208
AlwNI CAGNNNCTG 1 cut(s) 458
Ama87I CYCGRG 1 cut(s) 821
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 3 cut(s) 808, 887, 1163
ApoI RAATTY 2 cut(s) 207, 498
AseI ATTAAT 1 cut(s) 236
AspLEI GCGC 1 cut(s) 813
AspS9I GGNCC 1 cut(s) 614
AsuC2I CCSGG 5 cut(s) 621, 822, 823, 1007, 1133
AsuHPI GGTGA 2 cut(s) 311, 547
AvaI CYCGRG 1 cut(s) 821
AvaII GGWCC 1 cut(s) 614
BaeI ACNNNNGTAYC 2 cut(s) 665, 698
BamHI GGATCC 1 cut(s) 341
BanI GGYRCC 1 cut(s) 445
BbsI GAAGAC 2 cut(s) 826, 1125
Bbv12I GWGCWC 1 cut(s) 628
BbvI GCAGC 3 cut(s) 795, 874, 1150
BccI CCATC 3 cut(s) 41, 581, 1004
BceAI ACGGC 1 cut(s) 403
BciVI GTATCC 2 cut(s) 886, 949
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 5 cut(s) 621, 822, 823, 1007, 1133
BcoDI GTCTC 2 cut(s) 449, 1052
BcuI ACTAGT 1 cut(s) 740
BfaI CTAG 3 cut(s) 132, 645, 741
BfmI CTRYAG 1 cut(s) 241
BfuI GTATCC 2 cut(s) 886, 949
BisI GCNGC 4 cut(s) 187, 809, 888, 1164
BlsI GCNGC 4 cut(s) 188, 810, 889, 1165
Bme1390I CCNGG 5 cut(s) 621, 822, 823, 1007, 1133
Bme18I GGWCC 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 821
BmgT120I GGNCC 1 cut(s) 614
BmiI GGNNCC 2 cut(s) 343, 447
BmrFI CCNGG 5 cut(s) 621, 822, 823, 1007, 1133
BmsI GCATC 3 cut(s) 38, 517, 1108
BoxI GACNNNNGTC 1 cut(s) 830
BpiI GAAGAC 2 cut(s) 826, 1125
BpmI CTGGAG 1 cut(s) 828
Bpu10I CCTNAGC 2 cut(s) 87, 437
BpuMI CCSGG 5 cut(s) 621, 822, 823, 1007, 1133
BsaAI YACGTR 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 801
BsaI GGTCTC 1 cut(s) 1052
BsaJI CCNNGG 2 cut(s) 821, 1103
BsaWI WCCGGW 1 cut(s) 344
Bsc4I CCNNNNNNNGG 1 cut(s) 532
Bse1I ACTGG 3 cut(s) 254, 391, 676
Bse3DI GCAATG 1 cut(s) 1165
Bse8I GATNNNNATC 1 cut(s) 801
BseDI CCNNGG 2 cut(s) 821, 1103
BseGI GGATG 6 cut(s) 53, 295, 508, 799, 1015, 1099
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 1 cut(s) 532
BseMI GCAATG 1 cut(s) 1165
BseMII CTCAG 3 cut(s) 192, 1042, 1224
BseNI ACTGG 3 cut(s) 254, 391, 676
BseRI GAGGAG 1 cut(s) 159
BseXI GCAGC 3 cut(s) 795, 874, 1150
Bsh1236I CGCG 1 cut(s) 327
BshFI GGCC 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 1 cut(s) 821
BsiSI CCGG 5 cut(s) 345, 620, 822, 1007, 1133
BslFI GGGAC 4 cut(s) 725, 838, 948, 1115
BslI CCNNNNNNNGG 1 cut(s) 532
BsmAI GTCTC 2 cut(s) 449, 1052
BsmFI GGGAC 4 cut(s) 725, 838, 948, 1115
BsnI GGCC 1 cut(s) 390
Bso31I GGTCTC 1 cut(s) 1052
BsoBI CYCGRG 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 628
Bsp143I GATC 9 cut(s) 197, 341, 556, 802, 815, 1038, 1060, 1197, 1213
Bsp19I CCATGG 1 cut(s) 1103
BspACI CCGC 6 cut(s) 187, 617, 658, 747, 890, 953
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 3 cut(s) 193, 1041, 1223
BspFNI CGCG 1 cut(s) 327
BspHI TCATGA 1 cut(s) 694
BspLI GGNNCC 2 cut(s) 343, 447
BspMAI CTGCAG 1 cut(s) 245
BspPI GGATC 5 cut(s) 336, 349, 1055, 1205, 1208
BspQI GCTCTTC 1 cut(s) 176
BspT107I GGYRCC 1 cut(s) 445
BspTNI GGTCTC 1 cut(s) 1052
BsrBI CCGCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 1165
BsrI ACTGG 3 cut(s) 254, 391, 676
BssECI CCNNGG 2 cut(s) 821, 1103
BssMI GATC 9 cut(s) 197, 341, 556, 802, 815, 1038, 1060, 1197, 1213
BssT1I CCWWGG 1 cut(s) 1103
Bst4CI ACNGT 3 cut(s) 450, 608, 754
Bst6I CTCTTC 3 cut(s) 176, 966, 1029
BstBAI YACGTR 1 cut(s) 281
BstDEI CTNAG 5 cut(s) 87, 201, 437, 1028, 1210
BstDSI CCRYGG 1 cut(s) 1103
BstENI CCTNNNNNAGG 1 cut(s) 530
BstF5I GGATG 6 cut(s) 53, 295, 508, 799, 1015, 1099
BstFNI CGCG 1 cut(s) 327
BstHHI GCGC 1 cut(s) 813
BstKTI GATC 9 cut(s) 200, 344, 559, 805, 818, 1041, 1063, 1200, 1216
BstMAI GTCTC 2 cut(s) 449, 1052
BstMBI GATC 9 cut(s) 197, 341, 556, 802, 815, 1038, 1060, 1197, 1213
BstMWI GCNNNNNNNGC 2 cut(s) 48, 407
BstNSI RCATGY 1 cut(s) 1130
BstPAI GACNNNNGTC 1 cut(s) 830
BstSCI CCNGG 5 cut(s) 619, 820, 821, 1005, 1131
BstSFI CTRYAG 1 cut(s) 241
BstUI CGCG 1 cut(s) 327
BstV1I GCAGC 3 cut(s) 795, 874, 1150
BstV2I GAAGAC 2 cut(s) 826, 1125
BstX2I RGATCY 4 cut(s) 341, 1060, 1197, 1213
BstYI RGATCY 4 cut(s) 341, 1060, 1197, 1213
BsuI GTATCC 2 cut(s) 886, 949
BsuRI GGCC 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 1103
BtsCI GGATG 6 cut(s) 53, 295, 508, 799, 1015, 1099
BtsI GCAGTG 3 cut(s) 135, 837, 909
BtsIMutI CAGTG 7 cut(s) 135, 261, 759, 778, 837, 909, 1079
CaiI CAGNNNCTG 1 cut(s) 458
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 813
Cfr13I GGNCC 1 cut(s) 614
Cfr9I CCCGGG 1 cut(s) 821
Csp6I GTAC 2 cut(s) 30, 750
CviAII CATG 6 cut(s) 568, 689, 695, 897, 1104, 1127
CviQI GTAC 2 cut(s) 30, 750
DdeI CTNAG 5 cut(s) 87, 201, 437, 1028, 1210
DpnI GATC 9 cut(s) 199, 343, 558, 804, 817, 1040, 1062, 1199, 1215
DpnII GATC 9 cut(s) 197, 341, 556, 802, 815, 1038, 1060, 1197, 1213
DrdI GACNNNNNNGTC 1 cut(s) 1127
DseDI GACNNNNNNGTC 1 cut(s) 1127
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 3 cut(s) 176, 966, 1029
EarI CTCTTC 3 cut(s) 176, 966, 1029
Eco130I CCWWGG 1 cut(s) 1103
Eco31I GGTCTC 1 cut(s) 1052
Eco47I GGWCC 1 cut(s) 614
Eco57I CTGAAG 2 cut(s) 947, 1103
Eco88I CYCGRG 1 cut(s) 821
EcoNI CCTNNNNNAGG 1 cut(s) 530
EcoT14I CCWWGG 1 cut(s) 1103
ErhI CCWWGG 1 cut(s) 1103
FaeI CATG 6 cut(s) 571, 692, 698, 900, 1107, 1130
FalI AAGNNNNNCTT 2 cut(s) 1035, 1067
FaqI GGGAC 4 cut(s) 725, 838, 948, 1115
FatI CATG 6 cut(s) 567, 688, 694, 896, 1103, 1126
FauI CCCGC 1 cut(s) 651
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 4 cut(s) 187, 809, 888, 1164
FokI GGATG 6 cut(s) 60, 302, 495, 806, 1022, 1086
Fsp4HI GCNGC 4 cut(s) 187, 809, 888, 1164
FspBI CTAG 3 cut(s) 132, 645, 741
GlaI GCGC 1 cut(s) 812
GluI GCNGC 4 cut(s) 187, 809, 888, 1164
GsuI CTGGAG 1 cut(s) 828
HaeIII GGCC 1 cut(s) 390
HapII CCGG 5 cut(s) 345, 620, 822, 1007, 1133
HhaI GCGC 1 cut(s) 813
Hin1II CATG 6 cut(s) 571, 692, 698, 900, 1107, 1130
Hin6I GCGC 1 cut(s) 811
HinP1I GCGC 1 cut(s) 811
HincII GTYRAC 2 cut(s) 523, 988
HindII GTYRAC 2 cut(s) 523, 988
HinfI GANTC 2 cut(s) 826, 1018
HpaI GTTAAC 2 cut(s) 523, 988
HpaII CCGG 5 cut(s) 345, 620, 822, 1007, 1133
HphI GGTGA 2 cut(s) 311, 547
Hpy166II GTNNAC 2 cut(s) 523, 988
Hpy188I TCNGA 9 cut(s) 202, 454, 632, 999, 1031, 1065, 1096, 1204, 1213
Hpy188III TCNNGA 7 cut(s) 8, 479, 575, 612, 695, 845, 965
Hpy8I GTNNAC 2 cut(s) 523, 988
HpyAV CCTTC 2 cut(s) 1037, 1175
HpyCH4III ACNGT 3 cut(s) 450, 608, 754
HpyCH4IV ACGT 3 cut(s) 280, 582, 872
HpyCH4V TGCA 4 cut(s) 140, 243, 1056, 1152
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 407
HpyF3I CTNAG 5 cut(s) 87, 201, 437, 1028, 1210
HpySE526I ACGT 3 cut(s) 280, 582, 872
Hsp92II CATG 6 cut(s) 571, 692, 698, 900, 1107, 1130
HspAI GCGC 1 cut(s) 811
Ksp22I TGATCA 1 cut(s) 556
KspAI GTTAAC 2 cut(s) 523, 988
Kzo9I GATC 9 cut(s) 197, 341, 556, 802, 815, 1038, 1060, 1197, 1213
LguI GCTCTTC 1 cut(s) 176
LmnI GCTCC 3 cut(s) 505, 847, 1096
Lsp1109I GCAGC 3 cut(s) 795, 874, 1150
LweI GCATC 3 cut(s) 38, 517, 1108
MaeI CTAG 3 cut(s) 132, 645, 741
MaeII ACGT 3 cut(s) 280, 582, 872
MaeIII GTNAC 5 cut(s) 127, 299, 667, 736, 910
MalI GATC 9 cut(s) 199, 343, 558, 804, 817, 1040, 1062, 1199, 1215
MbiI CCGCTC 1 cut(s) 189
MboI GATC 9 cut(s) 197, 341, 556, 802, 815, 1038, 1060, 1197, 1213
MflI RGATCY 4 cut(s) 341, 1060, 1197, 1213
MhlI GDGCHC 1 cut(s) 628
MluCI AATT 4 cut(s) 207, 336, 498, 727
MlyI GAGTC 1 cut(s) 820
MmeI TCCRAC 1 cut(s) 1074
MseI TTAA 5 cut(s) 236, 431, 522, 717, 987
MslI CAYNNNNRTG 4 cut(s) 114, 254, 533, 693
MspA1I CMGCKG 1 cut(s) 808
MspI CCGG 5 cut(s) 345, 620, 822, 1007, 1133
MspR9I CCNGG 5 cut(s) 621, 822, 823, 1007, 1133
MvnI CGCG 1 cut(s) 327
MwoI GCNNNNNNNGC 2 cut(s) 48, 407
NciI CCSGG 5 cut(s) 621, 822, 823, 1007, 1133
NcoI CCATGG 1 cut(s) 1103
NdeII GATC 9 cut(s) 197, 341, 556, 802, 815, 1038, 1060, 1197, 1213
NlaIII CATG 6 cut(s) 571, 692, 698, 900, 1107, 1130
NlaIV GGNNCC 2 cut(s) 343, 447
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 1130
PagI TCATGA 1 cut(s) 694
PciSI GCTCTTC 1 cut(s) 176
PfeI GAWTC 1 cut(s) 1018
PfoI TCCNGGA 2 cut(s) 1005, 1131
PkrI GCNGC 4 cut(s) 188, 810, 889, 1165
PleI GAGTC 1 cut(s) 820
PpsI GAGTC 1 cut(s) 820
Ppu21I YACGTR 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 830
PshBI ATTAAT 1 cut(s) 236
PspN4I GGNNCC 2 cut(s) 343, 447
PspPI GGNCC 1 cut(s) 614
PstI CTGCAG 1 cut(s) 245
PstNI CAGNNNCTG 1 cut(s) 458
PsuI RGATCY 4 cut(s) 341, 1060, 1197, 1213
PvuII CAGCTG 1 cut(s) 808
RsaI GTAC 2 cut(s) 31, 751
RsaNI GTAC 2 cut(s) 30, 750
RseI CAYNNNNRTG 4 cut(s) 114, 254, 533, 693
SapI GCTCTTC 1 cut(s) 176
SaqAI TTAA 5 cut(s) 236, 431, 522, 717, 987
SatI GCNGC 4 cut(s) 187, 809, 888, 1164
Sau3AI GATC 9 cut(s) 197, 341, 556, 802, 815, 1038, 1060, 1197, 1213
Sau96I GGNCC 1 cut(s) 614
SchI GAGTC 1 cut(s) 820
ScrFI CCNGG 5 cut(s) 621, 822, 823, 1007, 1133
SduI GDGCHC 1 cut(s) 628
SfaNI GCATC 3 cut(s) 38, 517, 1108
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 1 cut(s) 614
SmaI CCCGGG 1 cut(s) 823
SmiMI CAYNNNNRTG 4 cut(s) 114, 254, 533, 693
SpeI ACTAGT 1 cut(s) 740
Sse9I AATT 4 cut(s) 207, 336, 498, 727
SsiI CCGC 6 cut(s) 187, 617, 658, 747, 890, 953
SspMI CTAG 3 cut(s) 132, 645, 741
StyD4I CCNGG 5 cut(s) 619, 820, 821, 1005, 1131
StyI CCWWGG 1 cut(s) 1103
TaaI ACNGT 3 cut(s) 450, 608, 754
TaiI ACGT 3 cut(s) 283, 585, 875
TaqI TCGA 2 cut(s) 373, 1041
TasI AATT 4 cut(s) 207, 336, 498, 727
TauI GCSGC 1 cut(s) 189
TfiI GAWTC 1 cut(s) 1018
Tru1I TTAA 5 cut(s) 236, 431, 522, 717, 987
Tru9I TTAA 5 cut(s) 236, 431, 522, 717, 987
TscAI CASTG 7 cut(s) 142, 261, 759, 778, 844, 909, 1086
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 3 cut(s) 808, 887, 1163
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 5 cut(s) 177, 285, 306, 509, 677
TspMI CCCGGG 1 cut(s) 821
TspRI CASTG 7 cut(s) 142, 261, 759, 778, 844, 909, 1086
VpaK11BI GGWCC 1 cut(s) 614
VspI ATTAAT 1 cut(s) 236
XagI CCTNNNNNAGG 1 cut(s) 530
XapI RAATTY 2 cut(s) 207, 498
XceI RCATGY 1 cut(s) 1130
XmaI CCCGGG 1 cut(s) 821
XspI CTAG 3 cut(s) 132, 645, 741
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.