Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Reverse (-)

66243156 .. 66249487

Gene Structure 6332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG416800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGTCAATGAGTATGTTCGGGAGTGTAAGATTGGTTCTGGCAGTTATGGGAAAGTGGTTTTGTATCGAAGCCTTGTAGATGGAAAGCATTATGCACTAAAGGCGTTTCATAAATCTCATTTATTAAAACTCCGGGTTGCACCTTCGGAGACAGCTATGACAGATGTTCTTCGTGAGGTTCTTATTATGAAAATGTTGGAACATCCTAACATAGTTAATCTCATTGAGGTGATTGACGACCCAGACGCAGACCATTTCTACATGGTTCTTGAATATGTGGAAGGCAAATGGGTCTGTGAGGGTTCTGGTCCACCAGGCGGCCTAGGAGAATCTACTGCAAGAAAGTACCTGCGGGACATAGTTCGAGGGCTAATGTACCTCCATGATCATAACATAGTACATGGTGATATCAAACCTGATAATCTGCTGGTTAGTAGTAATGGTACGGTGAAGATTGGGGATTTTAGCGTCAGCCAAGTTTTTGAGGATGATAATGACGAGCTGCGCCGATCTCCAGGGACTCCTGTTTTCACTGCACCTGAATGTTGTTTAGGCCTAACCTATCATGGTAAAGCGGCTGACACATGGGCAGTGGGGGTTACTTTGTACTGTATGGTATTGGGACAATACCCATTCCTTGGAGATACTCTGCAGGATACATATGACAAGATTGTTAATAACCCTTTAGTACTTCCAGAGAATATGACCCCACAGTTGAAGAATTTACTTGAAGGGCTTCTGTGCAAAGACCCTGCAATGAGGATGACTTTGGAGGAAGTTGCAGATCATAGTTGGGTTGTTGGAAATGATGGGAGAATGCCTCATTATTTATGCTGGTGCAAGCGGCGTCGCAAGAGTCTGAGTATTAGAGAGGAATCTAATGGGACAAAAGATGACTGTAGCATAACCCATACTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

306

Amino Acids

34.4

Weight (kDa)

5.64

Isoelectric Point (pI)

43.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	5 - 266	6.8e-59	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	9 - 261	1.6e-32	Protein tyrosine and serine/threonine kinase
Kinase-like	PF14531	111 - 244	2.2e-07	Kinase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	357
AccB7I	CCANNNNNTGG	1 cut(s)	638
AciI	CCGC	4 cut(s)	318, 352, 575, 844
AcsI	RAATTY	1 cut(s)	721
AcyI	GRCGYC	1 cut(s)	847
AfaI	GTAC	6 cut(s)	347, 377, 399, 445, 608, 690
AfiI	CCNNNNNNNGG	2 cut(s)	317, 638
AgsI	TTSAA	3 cut(s)	272, 718, 731
AjnI	CCWGG	2 cut(s)	313, 514
AluBI	AGCT	2 cut(s)	155, 502
AluI	AGCT	2 cut(s)	155, 502
Alw26I	GTCTC	1 cut(s)	143
AoxI	GGCC	2 cut(s)	319, 553
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	721
Asp700I	GAANNNNTTC	1 cut(s)	735
AspA2I	CCTAGG	1 cut(s)	322
AspLEI	GCGC	1 cut(s)	507
AspS9I	GGNCC	1 cut(s)	308
AsuC2I	CCSGG	1 cut(s)	134
AsuHPI	GGTGA	3 cut(s)	241, 416, 460
AvaII	GGWCC	1 cut(s)	308
AvrII	CCTAGG	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	2 cut(s)	74, 803
BciT130I	CCWGG	2 cut(s)	315, 516
BciVI	GTATCC	1 cut(s)	649
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	1 cut(s)	134
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	323, 919
BfmI	CTRYAG	2 cut(s)	650, 898
BfuAI	ACCTGC	1 cut(s)	357
BfuI	GTATCC	1 cut(s)	649
BisI	GCNGC	4 cut(s)	319, 503, 576, 845
BlnI	CCTAGG	1 cut(s)	322
BlsI	GCNGC	4 cut(s)	320, 504, 577, 846
BmcAI	AGTACT	1 cut(s)	690
Bme1390I	CCNGG	3 cut(s)	134, 315, 516
Bme18I	GGWCC	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	308
BmrFI	CCNGG	3 cut(s)	134, 315, 516
BplI	GAGNNNNNCTC	2 cut(s)	805, 837
BpmI	CTGGAG	1 cut(s)	498
BpuMI	CCSGG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	847
BsaJI	CCNNGG	3 cut(s)	322, 515, 637
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 638
Bse3DI	GCAATG	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	315, 516
BseDI	CCNNGG	3 cut(s)	322, 515, 637
BseGI	GGATG	3 cut(s)	202, 493, 768
BseLI	CCNNNNNNNGG	2 cut(s)	317, 638
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	1 cut(s)	851
BseXI	GCAGC	1 cut(s)	489
BsgI	GTGCAG	1 cut(s)	519
BshFI	GGCC	2 cut(s)	321, 555
BsiSI	CCGG	1 cut(s)	133
BslFI	GGGAC	4 cut(s)	368, 532, 636, 898
BslI	CCNNNNNNNGG	2 cut(s)	317, 638
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	4 cut(s)	368, 532, 636, 898
BsmI	GAATGC	1 cut(s)	822
BsnI	GGCC	2 cut(s)	321, 555
Bsp143I	GATC	3 cut(s)	385, 509, 784
BspACI	CCGC	4 cut(s)	318, 352, 575, 844
BspANI	GGCC	2 cut(s)	321, 555
BspCNI	CTCAG	1 cut(s)	852
BspMAI	CTGCAG	1 cut(s)	654
BspMI	ACCTGC	1 cut(s)	357
BsrDI	GCAATG	1 cut(s)	762
BssECI	CCNNGG	3 cut(s)	322, 515, 637
BssMI	GATC	3 cut(s)	385, 509, 784
BssNI	GRCGYC	1 cut(s)	847
BssT1I	CCWWGG	2 cut(s)	322, 637
Bst2UI	CCWGG	2 cut(s)	315, 516
Bst4CI	ACNGT	4 cut(s)	448, 611, 714, 899
BstACI	GRCGYC	1 cut(s)	847
BstC8I	GCNNGC	1 cut(s)	842
BstDEI	CTNAG	1 cut(s)	860
BstF5I	GGATG	3 cut(s)	202, 493, 768
BstHHI	GCGC	1 cut(s)	507
BstKTI	GATC	3 cut(s)	388, 512, 787
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	3 cut(s)	385, 509, 784
BstMWI	GCNNNNNNNGC	1 cut(s)	101
BstNI	CCWGG	2 cut(s)	315, 516
BstSCI	CCNGG	3 cut(s)	132, 313, 514
BstSFI	CTRYAG	2 cut(s)	650, 898
BstV1I	GCAGC	1 cut(s)	489
BsuI	GTATCC	1 cut(s)	649
BsuRI	GGCC	2 cut(s)	321, 555
BtsCI	GGATG	3 cut(s)	202, 493, 768
BtsI	GCAGTG	2 cut(s)	531, 597
BtsIMutI	CAGTG	2 cut(s)	531, 597
BveI	ACCTGC	1 cut(s)	357
Cac8I	GCNNGC	1 cut(s)	842
CfoI	GCGC	1 cut(s)	507
Cfr13I	GGNCC	1 cut(s)	308
CseI	GACGC	3 cut(s)	254, 457, 836
Csp6I	GTAC	6 cut(s)	346, 376, 398, 444, 607, 689
CviAII	CATG	5 cut(s)	262, 383, 401, 566, 585
CviJI	RGCY	9 cut(s)	72, 155, 321, 370, 474, 502, 555, 578, 736
CviKI_1	RGCY	9 cut(s)	72, 155, 321, 370, 474, 502, 555, 578, 736
CviQI	GTAC	6 cut(s)	346, 376, 398, 444, 607, 689
DdeI	CTNAG	1 cut(s)	860
DpnI	GATC	3 cut(s)	387, 511, 786
DpnII	GATC	3 cut(s)	385, 509, 784
Eco130I	CCWWGG	2 cut(s)	322, 637
Eco147I	AGGCCT	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	308
EcoRII	CCWGG	2 cut(s)	313, 514
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	2 cut(s)	322, 637
ErhI	CCWWGG	2 cut(s)	322, 637
FaeI	CATG	5 cut(s)	265, 386, 404, 569, 588
FaqI	GGGAC	4 cut(s)	368, 532, 636, 898
FatI	CATG	5 cut(s)	261, 382, 400, 565, 584
FauI	CCCGC	1 cut(s)	345
FauNDI	CATATG	1 cut(s)	661
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	4 cut(s)	319, 503, 576, 845
FokI	GGATG	3 cut(s)	189, 500, 775
Fsp4HI	GCNGC	4 cut(s)	319, 503, 576, 845
FspBI	CTAG	2 cut(s)	323, 919
GlaI	GCGC	1 cut(s)	506
GluI	GCNGC	4 cut(s)	319, 503, 576, 845
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	321, 555
HapII	CCGG	1 cut(s)	133
HgaI	GACGC	3 cut(s)	254, 457, 836
HhaI	GCGC	1 cut(s)	507
Hin1I	GRCGYC	1 cut(s)	847
Hin1II	CATG	5 cut(s)	265, 386, 404, 569, 588
Hin6I	GCGC	1 cut(s)	505
HinP1I	GCGC	1 cut(s)	505
HinfI	GANTC	4 cut(s)	329, 520, 856, 875
HpaII	CCGG	1 cut(s)	133
HphI	GGTGA	3 cut(s)	241, 416, 460
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	2 cut(s)	148, 861
Hpy188III	TCNNGA	4 cut(s)	20, 173, 269, 695
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	1 cut(s)	852
HpyAV	CCTTC	3 cut(s)	153, 275, 725
HpyCH4III	ACNGT	4 cut(s)	448, 611, 714, 899
HpyCH4V	TGCA	9 cut(s)	95, 140, 338, 536, 652, 744, 755, 782, 840
HpyF10VI	GCNNNNNNNGC	1 cut(s)	101
HpyF3I	CTNAG	1 cut(s)	860
Hsp92I	GRCGYC	1 cut(s)	847
Hsp92II	CATG	5 cut(s)	265, 386, 404, 569, 588
HspAI	GCGC	1 cut(s)	505
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	3 cut(s)	385, 509, 784
Lsp1109I	GCAGC	1 cut(s)	489
MaeI	CTAG	2 cut(s)	323, 919
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	3 cut(s)	387, 511, 786
MboI	GATC	3 cut(s)	385, 509, 784
MboII	GAAGA	3 cut(s)	161, 463, 730
MluCI	AATT	1 cut(s)	721
MlyI	GAGTC	2 cut(s)	514, 865
MmeI	TCCRAC	2 cut(s)	177, 781
MroXI	GAANNNNTTC	1 cut(s)	735
MseI	TTAA	3 cut(s)	125, 216, 675
MslI	CAYNNNNRTG	2 cut(s)	227, 541
MspI	CCGG	1 cut(s)	133
MspR9I	CCNGG	3 cut(s)	134, 315, 516
Mva1269I	GAATGC	1 cut(s)	822
MvaI	CCWGG	2 cut(s)	315, 516
MwoI	GCNNNNNNNGC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	134
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	3 cut(s)	385, 509, 784
NlaIII	CATG	5 cut(s)	265, 386, 404, 569, 588
PceI	AGGCCT	1 cut(s)	555
PctI	GAATGC	1 cut(s)	822
PdmI	GAANNNNTTC	1 cut(s)	735
PfeI	GAWTC	2 cut(s)	329, 875
PflMI	CCANNNNNTGG	1 cut(s)	638
PkrI	GCNGC	4 cut(s)	320, 504, 577, 846
PleI	GAGTC	2 cut(s)	514, 864
PpsI	GAGTC	2 cut(s)	514, 864
Psp6I	CCWGG	2 cut(s)	313, 514
PspGI	CCWGG	2 cut(s)	313, 514
PspPI	GGNCC	1 cut(s)	308
PsrI	GAACNNNNNNTAC	2 cut(s)	19, 51
PstI	CTGCAG	1 cut(s)	654
RsaI	GTAC	6 cut(s)	347, 377, 399, 445, 608, 690
RsaNI	GTAC	6 cut(s)	346, 376, 398, 444, 607, 689
RseI	CAYNNNNRTG	2 cut(s)	227, 541
SaqAI	TTAA	3 cut(s)	125, 216, 675
SatI	GCNGC	4 cut(s)	319, 503, 576, 845
Sau3AI	GATC	3 cut(s)	385, 509, 784
Sau96I	GGNCC	1 cut(s)	308
ScaI	AGTACT	1 cut(s)	690
SchI	GAGTC	2 cut(s)	514, 865
ScrFI	CCNGG	3 cut(s)	134, 315, 516
SfcI	CTRYAG	2 cut(s)	650, 898
SinI	GGWCC	1 cut(s)	308
SmiMI	CAYNNNNRTG	2 cut(s)	227, 541
Sse9I	AATT	1 cut(s)	721
SseBI	AGGCCT	1 cut(s)	555
SsiI	CCGC	4 cut(s)	318, 352, 575, 844
SspMI	CTAG	2 cut(s)	323, 919
StuI	AGGCCT	1 cut(s)	555
StyD4I	CCNGG	3 cut(s)	132, 313, 514
StyI	CCWWGG	2 cut(s)	322, 637
TaaI	ACNGT	4 cut(s)	448, 611, 714, 899
TaqI	TCGA	2 cut(s)	67, 364
TasI	AATT	1 cut(s)	721
TatI	WGTACW	3 cut(s)	397, 606, 688
TauI	GCSGC	3 cut(s)	321, 578, 847
TfiI	GAWTC	2 cut(s)	329, 875
Tru1I	TTAA	3 cut(s)	125, 216, 675
Tru9I	TTAA	3 cut(s)	125, 216, 675
TscAI	CASTG	2 cut(s)	538, 597
TseI	GCWGC	1 cut(s)	502
TspDTI	ATGAA	2 cut(s)	98, 203
TspRI	CASTG	2 cut(s)	538, 597
Van91I	CCANNNNNTGG	1 cut(s)	638
VpaK11BI	GGWCC	1 cut(s)	308
XapI	RAATTY	1 cut(s)	721
XmaJI	CCTAGG	1 cut(s)	322
XmnI	GAANNNNTTC	1 cut(s)	735
XspI	CTAG	2 cut(s)	323, 919
ZrmI	AGTACT	1 cut(s)	690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.