Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0008392

Physical Location & Seq

Genomic Coordinates Forward (+)

6980743 .. 6987484

Gene Structure 6742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G100200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTTCCTTAAGAGTTGCTCACTTGCGAAAATGATGGGCTGCTGCAGTTGCTTTGGTTTCATTAGAAAACCCAAACGGAAAACAAGGCCCAATTATGGCTTTAATAATCACCTTTCCCAGGAGCTGTTGTTGGACGAAGATATAGAAGATGAGGATGATGGTTCATATAATGGTGAGGTTACAAGAACTACTCATGCTGATGAAAGTGAGCCACAAATCTGTGGCAATCGTTCTGAAGAGATTTTACACTTCAGGGAACAGATTGGAATGATTTGTAGGCAGGTCCCTGTGAAGGAGACCCACAAATGCATTCGCACAGAGGATGAAAATGGGAATAAGATGGTCAATGAGTATGTTCGTGAGTGTAAAATTGGTGCAGGCAGCTATGGAAAAGTGGTTCTGTATCGAAGCCTTGTAGATGGACAGCATTATGCAATTAAGGCCTTTCATAAGTCTCATTTATTAAAGCTCCGAGTTGCACCTTCAGAGACAGCTATGACAGATGTTCTTCGTGAGGTTCATATTATGAAAATGTTGCACCATCCTAACATAGTTAATCTCATTGAGGTGATTGACGACCCAGACATAGATCATTTCTACATGGTTCTTGAATATGTTGAAGGCAAATGGGTCTGTGAGGGTTCTGGTCCACCAGGCGGCATAGGAGAATGTACTGCAAGAAAGTACTTGCGGGATATAGTTTCTGGGCTGATGTACCTGCATGCTCATAACATAGTGCACGGTGATATCAAACCTGATAATCTGTTGGTTAGTCGTAATGGTACAGTGAAGATAGGGGATTTTAGTGTCAGCCAGGTTTTTGAGGATGAAAATGACGAGCTGCGCCGATCCCCGGGGACTCCTGTTTTCACTGCACCTGAATGTTGTTTAGGGCTAACCTATCGTGGTAGAGCTGCTGACACATGGGCAGTAGGGGTTACTTTGTACTGTCTGGTATTGGGACAATACCCGTTCCTTGGAGACACACTGCAGGATACATATGATAAGATTGTTAATAACCCTTTAGTACTTCCAGATGATATGACCCCACAGTTGAAAAATTTACTAGAAGGGCTTCTTTGCAAAGACCCAAACATGAGGTTGACATTAGAGGCTGTTGCGGAGCATACTTGGGTTATTGGAGATGATGGGTCGATACCTCAGTATTCATGTTGGTGCAAGCGCAAGAGTTTGCGAGAAGAATCTAATGGGACGAAAGATGATAGTAGCATAACCCATAGTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018107 GO:0018193 GO:0018209 GO:0018210 GO:0019538 GO:0023052 GO:0030587 GO:0031156 GO:0032502 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0043900 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045595 GO:0046777 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051703 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0090702 GO:0099120 GO:0099134 GO:0099135 GO:0099136 GO:0099139 GO:0140096 GO:1901261 GO:1901564 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04140 ko04152 ko04211 ko04920 ko04921 ko05034 map04140 map04152 map04211 map04920 map04921 map05034

Pfam Domains

Protein Families

Pkinase

Protein Analysis

416

Amino Acids

46.82

Weight (kDa)

5.48

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008392)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45240 AT3G45240 AT3G45240 AT5G60550
fragaria_vesca	FvH4_3g32550
malus_domestica	MD03G1116200.v1.1 MD11G1134400.v1.1
prunus_persica	Prupe.6G100200_v2.0.a1 Prupe.6G100200_v2.0.a1
pyrus_communis	pycom11g11150
rosa_chinensis	RchiOBHm_Chr5g0059631
rosa_laevigata	RLG00000035312
rosa_multiflora	Rmu_sc0009491.1_g000002 Rmu_sc0015758.1_g000001
rosa_roxburghii	Rroxscaffold_1G00020980
rosa_rugosa	Rorug05G0323700 Rorug05G0323700 Rorug05G0323700
rosa_samantha	Rh5AG388900 Rh5BG400600 Rh5CG424800 Rh5DG416800
rosa_wichuraiana	Rw5G036620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	271, 726
AciI	CCGC	3 cut(s)	657, 691, 1121
AclWI	GGATC	1 cut(s)	843
AcsI	RAATTY	1 cut(s)	1060
AcuI	CTGAAG	3 cut(s)	235, 255, 468
AfaI	GTAC	6 cut(s)	673, 686, 716, 784, 947, 1029
AfiI	CCNNNNNNNGG	6 cut(s)	95, 118, 292, 656, 853, 977
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	3 cut(s)	611, 620, 1057
AjnI	CCWGG	3 cut(s)	117, 652, 813
AloI	GAACNNNNNNTCC	2 cut(s)	381, 413
AluBI	AGCT	6 cut(s)	124, 384, 469, 494, 841, 914
AluI	AGCT	6 cut(s)	124, 384, 469, 494, 841, 914
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	4 cut(s)	290, 459, 482, 975
Alw44I	GTGCAC	1 cut(s)	737
AlwI	GGATC	1 cut(s)	843
AlwNI	CAGNNNCTG	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	853
AoxI	GGCC	2 cut(s)	86, 441
ApaLI	GTGCAC	1 cut(s)	737
ApeKI	GCWGC	5 cut(s)	39, 42, 381, 841, 914
ApoI	RAATTY	1 cut(s)	1060
Asp700I	GAANNNNTTC	1 cut(s)	1074
AspLEI	GCGC	2 cut(s)	846, 1185
AspS9I	GGNCC	3 cut(s)	87, 283, 647
AsuC2I	CCSGG	2 cut(s)	854, 855
AsuHPI	GGTGA	4 cut(s)	101, 185, 580, 755
AvaI	CYCGRG	1 cut(s)	853
AvaII	GGWCC	2 cut(s)	283, 647
BaeGI	GKGCMC	1 cut(s)	741
BaeI	ACNNNNGTAYC	2 cut(s)	1148, 1181
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	5 cut(s)	26, 29, 393, 828, 901
BccI	CCATC	6 cut(s)	28, 152, 334, 413, 549, 1142
BciT130I	CCWGG	3 cut(s)	119, 654, 815
BciVI	GTATCC	1 cut(s)	988
BcnI	CCSGG	2 cut(s)	854, 855
BcoDI	GTCTC	4 cut(s)	290, 459, 482, 975
BfaI	CTAG	2 cut(s)	1067, 1246
BfmI	CTRYAG	2 cut(s)	43, 989
BfrI	CTTAAG	1 cut(s)	8
BfuAI	ACCTGC	2 cut(s)	271, 726
BfuI	GTATCC	1 cut(s)	988
BisI	GCNGC	6 cut(s)	40, 43, 382, 658, 842, 915
BlsI	GCNGC	6 cut(s)	41, 44, 383, 659, 843, 916
BmcAI	AGTACT	2 cut(s)	686, 1029
Bme1390I	CCNGG	5 cut(s)	119, 654, 815, 854, 855
Bme18I	GGWCC	2 cut(s)	283, 647
BmeT110I	CYCGRG	1 cut(s)	853
BmgT120I	GGNCC	3 cut(s)	87, 283, 647
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	5 cut(s)	119, 654, 815, 854, 855
BpuMI	CCSGG	2 cut(s)	854, 855
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	5 cut(s)	117, 852, 853, 854, 976
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	6 cut(s)	95, 118, 292, 656, 853, 977
BseBI	CCWGG	3 cut(s)	119, 654, 815
BseDI	CCNNGG	5 cut(s)	117, 852, 853, 854, 976
BseGI	GGATG	4 cut(s)	160, 328, 541, 832
BseLI	CCNNNNNNNGG	6 cut(s)	95, 118, 292, 656, 853, 977
BseMII	CTCAG	1 cut(s)	1175
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	5 cut(s)	26, 29, 393, 828, 901
BsgI	GTGCAG	2 cut(s)	396, 858
BshFI	GGCC	2 cut(s)	88, 443
BsiHKAI	GWGCWC	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	853
BsiSI	CCGG	1 cut(s)	854
BslFI	GGGAC	4 cut(s)	269, 871, 975, 1225
BslI	CCNNNNNNNGG	6 cut(s)	95, 118, 292, 656, 853, 977
BsmAI	GTCTC	4 cut(s)	290, 459, 482, 975
BsmFI	GGGAC	4 cut(s)	269, 871, 975, 1225
BsmI	GAATGC	1 cut(s)	309
BsnI	GGCC	2 cut(s)	88, 443
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	853
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	2 cut(s)	589, 848
BspACI	CCGC	3 cut(s)	657, 691, 1121
BspANI	GGCC	2 cut(s)	88, 443
BspCNI	CTCAG	1 cut(s)	1174
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	2 cut(s)	47, 993
BspMI	ACCTGC	2 cut(s)	271, 726
BspPI	GGATC	1 cut(s)	843
BspTI	CTTAAG	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	290
BssECI	CCNNGG	5 cut(s)	117, 852, 853, 854, 976
BssMI	GATC	2 cut(s)	589, 848
BssT1I	CCWWGG	1 cut(s)	976
Bst2UI	CCWGG	3 cut(s)	119, 654, 815
Bst4CI	ACNGT	4 cut(s)	743, 787, 950, 1053
Bst6I	CTCTTC	1 cut(s)	231
BstAFI	CTTAAG	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	379, 723, 1181
BstDEI	CTNAG	1 cut(s)	1161
BstENI	CCTNNNNNAGG	1 cut(s)	116
BstF5I	GGATG	4 cut(s)	160, 328, 541, 832
BstHHI	GCGC	2 cut(s)	846, 1185
BstKTI	GATC	2 cut(s)	592, 851
BstMAI	GTCTC	4 cut(s)	290, 459, 482, 975
BstMBI	GATC	2 cut(s)	589, 848
BstMWI	GCNNNNNNNGC	2 cut(s)	48, 440
BstNI	CCWGG	3 cut(s)	119, 654, 815
BstNSI	RCATGY	1 cut(s)	725
BstSCI	CCNGG	5 cut(s)	117, 652, 813, 852, 853
BstSFI	CTRYAG	2 cut(s)	43, 989
BstSLI	GKGCMC	1 cut(s)	741
BstV1I	GCAGC	5 cut(s)	26, 29, 393, 828, 901
BsuI	GTATCC	1 cut(s)	988
BsuRI	GGCC	2 cut(s)	88, 443
BtsCI	GGATG	4 cut(s)	160, 328, 541, 832
BtsI	GCAGTG	2 cut(s)	870, 986
BtsIMutI	CAGTG	3 cut(s)	792, 870, 986
BveI	ACCTGC	2 cut(s)	271, 726
Cac8I	GCNNGC	3 cut(s)	379, 723, 1181
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	2 cut(s)	846, 1185
Cfr13I	GGNCC	3 cut(s)	87, 283, 647
Cfr9I	CCCGGG	1 cut(s)	853
Csp6I	GTAC	6 cut(s)	672, 685, 715, 783, 946, 1028
CviAII	CATG	6 cut(s)	194, 601, 722, 924, 1096, 1170
CviQI	GTAC	6 cut(s)	672, 685, 715, 783, 946, 1028
DdeI	CTNAG	1 cut(s)	1161
DpnI	GATC	2 cut(s)	591, 850
DpnII	GATC	2 cut(s)	589, 848
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	976
Eco147I	AGGCCT	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	748
Eco47I	GGWCC	2 cut(s)	283, 647
Eco57I	CTGAAG	3 cut(s)	235, 255, 468
Eco88I	CYCGRG	1 cut(s)	853
EcoNI	CCTNNNNNAGG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRII	CCWGG	3 cut(s)	117, 652, 813
EcoRV	GATATC	1 cut(s)	748
EcoT14I	CCWWGG	1 cut(s)	976
EcoT22I	ATGCAT	1 cut(s)	311
ErhI	CCWWGG	1 cut(s)	976
FaeI	CATG	6 cut(s)	197, 604, 725, 927, 1099, 1173
FalI	AAGNNNNNCTT	2 cut(s)	1062, 1094
FaqI	GGGAC	4 cut(s)	269, 871, 975, 1225
FatI	CATG	6 cut(s)	193, 600, 721, 923, 1095, 1169
FauI	CCCGC	1 cut(s)	684
FauNDI	CATATG	1 cut(s)	1000
Fnu4HI	GCNGC	6 cut(s)	40, 43, 382, 658, 842, 915
FokI	GGATG	4 cut(s)	167, 335, 528, 839
Fsp4HI	GCNGC	6 cut(s)	40, 43, 382, 658, 842, 915
FspBI	CTAG	2 cut(s)	1067, 1246
GlaI	GCGC	2 cut(s)	845, 1184
GluI	GCNGC	6 cut(s)	40, 43, 382, 658, 842, 915
HaeIII	GGCC	2 cut(s)	88, 443
HapII	CCGG	1 cut(s)	854
HhaI	GCGC	2 cut(s)	846, 1185
Hin1II	CATG	6 cut(s)	197, 604, 725, 927, 1099, 1173
Hin6I	GCGC	2 cut(s)	844, 1183
HinP1I	GCGC	2 cut(s)	844, 1183
HincII	GTYRAC	1 cut(s)	1104
HindII	GTYRAC	1 cut(s)	1104
HinfI	GANTC	2 cut(s)	859, 1202
HpaII	CCGG	1 cut(s)	854
HphI	GGTGA	4 cut(s)	101, 185, 580, 755
Hpy166II	GTNNAC	3 cut(s)	650, 739, 1104
Hpy188I	TCNGA	3 cut(s)	235, 473, 487
Hpy188III	TCNNGA	4 cut(s)	359, 512, 608, 1034
Hpy8I	GTNNAC	3 cut(s)	650, 739, 1104
HpyAV	CCTTC	4 cut(s)	286, 492, 614, 1064
HpyCH4III	ACNGT	4 cut(s)	743, 787, 950, 1053
HpyF10VI	GCNNNNNNNGC	2 cut(s)	48, 440
HpyF3I	CTNAG	1 cut(s)	1161
Hsp92II	CATG	6 cut(s)	197, 604, 725, 927, 1099, 1173
HspAI	GCGC	2 cut(s)	844, 1183
Kzo9I	GATC	2 cut(s)	589, 848
LmnI	GCTCC	3 cut(s)	121, 474, 1123
Lsp1109I	GCAGC	5 cut(s)	26, 29, 393, 828, 901
MaeI	CTAG	2 cut(s)	1067, 1246
MaeIII	GTNAC	3 cut(s)	178, 937, 1241
MalI	GATC	2 cut(s)	591, 850
MboI	GATC	2 cut(s)	589, 848
MboII	GAAGA	6 cut(s)	149, 158, 248, 500, 802, 1211
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	4 cut(s)	91, 369, 435, 1060
MlyI	GAGTC	1 cut(s)	853
MmeI	TCCRAC	1 cut(s)	111
Mph1103I	ATGCAT	1 cut(s)	311
MroXI	GAANNNNTTC	1 cut(s)	1074
MseI	TTAA	6 cut(s)	9, 102, 438, 464, 555, 1014
MslI	CAYNNNNRTG	4 cut(s)	198, 566, 880, 1174
MspCI	CTTAAG	1 cut(s)	8
MspI	CCGG	1 cut(s)	854
MspR9I	CCNGG	5 cut(s)	119, 654, 815, 854, 855
Mva1269I	GAATGC	1 cut(s)	309
MvaI	CCWGG	3 cut(s)	119, 654, 815
MwoI	GCNNNNNNNGC	2 cut(s)	48, 440
NciI	CCSGG	2 cut(s)	854, 855
NdeI	CATATG	1 cut(s)	1000
NdeII	GATC	2 cut(s)	589, 848
NlaIII	CATG	6 cut(s)	197, 604, 725, 927, 1099, 1173
NlaIV	GGNNCC	1 cut(s)	285
NmuCI	GTSAC	1 cut(s)	1241
NsiI	ATGCAT	1 cut(s)	311
NspI	RCATGY	1 cut(s)	725
PaeI	GCATGC	1 cut(s)	725
PceI	AGGCCT	1 cut(s)	443
PctI	GAATGC	1 cut(s)	309
PdmI	GAANNNNTTC	1 cut(s)	1074
PfeI	GAWTC	1 cut(s)	1202
PkrI	GCNGC	6 cut(s)	41, 44, 383, 659, 843, 916
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	3 cut(s)	117, 652, 813
PspGI	CCWGG	3 cut(s)	117, 652, 813
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	3 cut(s)	87, 283, 647
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	2 cut(s)	47, 993
PstNI	CAGNNNCTG	1 cut(s)	124
RsaI	GTAC	6 cut(s)	673, 686, 716, 784, 947, 1029
RsaNI	GTAC	6 cut(s)	672, 685, 715, 783, 946, 1028
RseI	CAYNNNNRTG	4 cut(s)	198, 566, 880, 1174
SaqAI	TTAA	6 cut(s)	9, 102, 438, 464, 555, 1014
SatI	GCNGC	6 cut(s)	40, 43, 382, 658, 842, 915
Sau3AI	GATC	2 cut(s)	589, 848
Sau96I	GGNCC	3 cut(s)	87, 283, 647
ScaI	AGTACT	2 cut(s)	686, 1029
SchI	GAGTC	1 cut(s)	853
ScrFI	CCNGG	5 cut(s)	119, 654, 815, 854, 855
SduI	GDGCHC	1 cut(s)	741
SfcI	CTRYAG	2 cut(s)	43, 989
SinI	GGWCC	2 cut(s)	283, 647
SmaI	CCCGGG	1 cut(s)	855
SmiMI	CAYNNNNRTG	4 cut(s)	198, 566, 880, 1174
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SphI	GCATGC	1 cut(s)	725
Sse9I	AATT	4 cut(s)	91, 369, 435, 1060
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	3 cut(s)	657, 691, 1121
SspMI	CTAG	2 cut(s)	1067, 1246
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	5 cut(s)	117, 652, 813, 852, 853
StyI	CCWWGG	1 cut(s)	976
TaaI	ACNGT	4 cut(s)	743, 787, 950, 1053
TaqI	TCGA	2 cut(s)	406, 1154
TasI	AATT	4 cut(s)	91, 369, 435, 1060
TatI	WGTACW	4 cut(s)	671, 684, 945, 1027
TauI	GCSGC	1 cut(s)	660
TfiI	GAWTC	1 cut(s)	1202
Tru1I	TTAA	6 cut(s)	9, 102, 438, 464, 555, 1014
Tru9I	TTAA	6 cut(s)	9, 102, 438, 464, 555, 1014
TscAI	CASTG	3 cut(s)	792, 877, 993
TseFI	GTSAC	1 cut(s)	1241
TseI	GCWGC	5 cut(s)	39, 42, 381, 841, 914
Tsp45I	GTSAC	1 cut(s)	1241
TspDTI	ATGAA	9 cut(s)	49, 153, 216, 339, 437, 509, 542, 843, 1158
TspGWI	ACGGA	1 cut(s)	91
TspMI	CCCGGG	1 cut(s)	853
TspRI	CASTG	3 cut(s)	792, 877, 993
Vha464I	CTTAAG	1 cut(s)	8
VneI	GTGCAC	1 cut(s)	737
VpaK11BI	GGWCC	2 cut(s)	283, 647
XagI	CCTNNNNNAGG	1 cut(s)	116
XapI	RAATTY	1 cut(s)	1060
XceI	RCATGY	1 cut(s)	725
XmaI	CCCGGG	1 cut(s)	853
XmnI	GAANNNNTTC	1 cut(s)	1074
XspI	CTAG	2 cut(s)	1067, 1246
ZrmI	AGTACT	2 cut(s)	686, 1029
Zsp2I	ATGCAT	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.