Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011119

Physical Location & Seq

Genomic Coordinates Reverse (-)

16628210 .. 16630570

Gene Structure 2361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGTCTGTGAAACTAAACCTATCTTCCTCAATCCTATTGATTCTCTTTGCGGCGGCGGCGAGTAAAGAGATCGGATTCGATGAATCTAATCCAATCAAAATGGTCTCCGACAATCTCCATGAGCTTGAAGACACCGTCGTCCAGATCCTAGGACAGTCCCGTCATGTTCTATCCTTTTCTCGCTTCACTCACAGGTATGGGAAGAAGTATCAGAGTGTGGAGGAGATGAAGTTAAGATTCTCTGTTTTTAAGGAGAATCTTGATTTAATCAGATCCACTAATAAGAAAGGCTTATCCTATAAACTCTCTCTTAATCAGTTTGCTGACTTGACATGGCAAGAGTTTCAAAGATACAAGCTTGGAGCTGCTCAAAACTGTTCTGCTACTTTAAAGGGTAGCCACAAGATCACTGAAGCTACAGTTCCAGACACAAAAGATTGGAGAGAAGATGGTATTGTTAGCCCTGTGAAAGAACAGGGACATTGTGGATCTTGTTGGACATTTAGCACAACTGGAGCTCTTGAAGCAGCTTACCATCAAGCATTTGGAAAAGGAATATCTTTGTCCGAGCAACAGCTTGTGGATTGTGCTGGTACTTTCAATAACTTTGGTTGTCATGGTGGACTTCCTTCTCAAGCCTTTGAATACATTAAATACAACGGTGGGCTCGACACGGAGGAGGCTTATCCTTACACCGGAAAAGACGGTGGCTGCAAATTTTCAGCGAAAAACATCGGTGTACAAGTCCGTGACTCTGTCAACATTACCCTGGGTGCAGAAGATGAACTGAAGCACGCGGTCGGGTTGGTAAGGCCAGTGAGTGTGGCGTTTGAGGTTGTACATGAATTCAGGTTTTATAAGAAGGGAGTTTTTACTAGCAATACATGTGGTAACACTCCAATGGATGTAAACCATGCAGTGTTAGCAGTTGGTTATGGAGTTGAAGACGACGTCCCGTACTGGCTTATAAAGAACTCATGGGGAGGTGAATGGGGAGACAATGGCTACTTCAAGATGGAAATGGGAAAGAACATGTGTGGTGTTGCAACATGTTCATCGTATCCGGTTGTAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0002376 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0006508 GO:0006807 GO:0006955 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04142 ko04210 map04142 map04210

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

358

Amino Acids

39.54

Weight (kDa)

6.22

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	59 - 115	7.4e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	141 - 348	9.2e-76	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011119)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45310 AT3G45310 AT5G60360 AT5G60360 AT5G60360
fragaria_vesca	FvH4_1g08760
malus_domestica	MD01G1180900.v1.1 MD02G1091800.v1.1 MD15G1217900.v1.1
prunus_persica	Prupe.7G198500_v2.0.a1
pyrus_communis	pycom02g07310 pycom15g19350
rosa_chinensis	RchiOBHm_Chr2g0095151
rosa_laevigata	RLG00000016536
rosa_multiflora	Rmu_sc0004439.1_g000010
rosa_roxburghii	Rroxscaffold_2G00146620
rosa_samantha	Rh2AG096500 Rh2BG097900 Rh2CG099900
rosa_wichuraiana	Rw2G007270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	858, 968
AasI	GACNNNNNNGTC	2 cut(s)	137, 159
AatII	GACGTC	1 cut(s)	954
AccII	CGCG	1 cut(s)	797
AciI	CCGC	4 cut(s)	50, 53, 56, 797
AclWI	GGATC	3 cut(s)	139, 267, 496
AcsI	RAATTY	2 cut(s)	716, 845
AcuI	CTGAAG	2 cut(s)	432, 809
AcyI	GRCGYC	1 cut(s)	951
AfaI	GTAC	4 cut(s)	595, 741, 840, 959
AfiI	CCNNNNNNNGG	1 cut(s)	695
AflIII	ACRYGT	3 cut(s)	884, 1032, 1049
AgsI	TTSAA	7 cut(s)	128, 347, 524, 601, 644, 944, 1012
AjnI	CCWGG	1 cut(s)	768
AluBI	AGCT	7 cut(s)	124, 358, 365, 416, 518, 530, 577
AluI	AGCT	7 cut(s)	124, 358, 365, 416, 518, 530, 577
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	2 cut(s)	109, 990
AlwI	GGATC	3 cut(s)	139, 267, 496
AoxI	GGCC	1 cut(s)	812
ApeKI	GCWGC	3 cut(s)	365, 527, 711
ApoI	RAATTY	2 cut(s)	716, 845
AspA2I	CCTAGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	998
AvrII	CCTAGG	1 cut(s)	148
BanII	GRGCYC	2 cut(s)	520, 669
BbsI	GAAGAC	2 cut(s)	135, 951
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	3 cut(s)	352, 539, 698
BccI	CCATC	3 cut(s)	443, 543, 1009
BciT130I	CCWGG	1 cut(s)	770
BciVI	GTATCC	1 cut(s)	1071
BcoDI	GTCTC	2 cut(s)	109, 990
BfaI	CTAG	2 cut(s)	149, 876
BfmI	CTRYAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	1071
BisI	GCNGC	6 cut(s)	51, 54, 57, 366, 528, 712
BlnI	CCTAGG	1 cut(s)	148
BlsI	GCNGC	6 cut(s)	52, 55, 58, 367, 529, 713
Bme1390I	CCNGG	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	770
BpiI	GAAGAC	2 cut(s)	135, 951
BpmI	CTGGAG	1 cut(s)	534
BpuEI	CTTGAG	1 cut(s)	618
BsaHI	GRCGYC	1 cut(s)	951
BsaI	GGTCTC	1 cut(s)	109
BsaJI	CCNNGG	3 cut(s)	148, 768, 769
BsaWI	WCCGGW	2 cut(s)	695, 1063
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	1 cut(s)	695
Bse1I	ACTGG	3 cut(s)	517, 815, 965
BseBI	CCWGG	1 cut(s)	770
BseDI	CCNNGG	3 cut(s)	148, 768, 769
BseGI	GGATG	1 cut(s)	910
BseLI	CCNNNNNNNGG	1 cut(s)	695
BseNI	ACTGG	3 cut(s)	517, 815, 965
BseRI	GAGGAG	2 cut(s)	236, 692
BseXI	GCAGC	3 cut(s)	352, 539, 698
BsgI	GTGCAG	1 cut(s)	795
Bsh1236I	CGCG	1 cut(s)	797
Bsh1285I	CGRYCG	1 cut(s)	801
BshFI	GGCC	1 cut(s)	814
BsiEI	CGRYCG	1 cut(s)	801
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	2 cut(s)	696, 1064
BslFI	GGGAC	3 cut(s)	142, 492, 938
BslI	CCNNNNNNNGG	1 cut(s)	695
BsmAI	GTCTC	2 cut(s)	109, 990
BsmFI	GGGAC	3 cut(s)	142, 492, 938
BsnI	GGCC	1 cut(s)	814
Bso31I	GGTCTC	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	520, 669
Bsp1407I	TGTACA	2 cut(s)	739, 838
Bsp143I	GATC	5 cut(s)	69, 144, 272, 405, 488
BspACI	CCGC	4 cut(s)	50, 53, 56, 797
BspANI	GGCC	1 cut(s)	814
BspFNI	CGCG	1 cut(s)	797
BspPI	GGATC	3 cut(s)	139, 267, 496
BspTNI	GGTCTC	1 cut(s)	109
BsrGI	TGTACA	2 cut(s)	739, 838
BsrI	ACTGG	3 cut(s)	517, 815, 965
BssECI	CCNNGG	3 cut(s)	148, 768, 769
BssMI	GATC	5 cut(s)	69, 144, 272, 405, 488
BssNI	GRCGYC	1 cut(s)	951
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	770
Bst4CI	ACNGT	6 cut(s)	136, 156, 377, 421, 662, 707
BstACI	GRCGYC	1 cut(s)	951
BstAUI	TGTACA	2 cut(s)	739, 838
BstC8I	GCNNGC	1 cut(s)	795
BstF5I	GGATG	1 cut(s)	910
BstFNI	CGCG	1 cut(s)	797
BstKTI	GATC	5 cut(s)	72, 147, 275, 408, 491
BstMAI	GTCTC	2 cut(s)	109, 990
BstMBI	GATC	5 cut(s)	69, 144, 272, 405, 488
BstMCI	CGRYCG	1 cut(s)	801
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 524, 923
BstNI	CCWGG	1 cut(s)	770
BstNSI	RCATGY	3 cut(s)	888, 1036, 1053
BstSCI	CCNGG	1 cut(s)	768
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	797
BstV1I	GCAGC	3 cut(s)	352, 539, 698
BstV2I	GAAGAC	2 cut(s)	135, 951
BstX2I	RGATCY	3 cut(s)	144, 272, 488
BstYI	RGATCY	3 cut(s)	144, 272, 488
BsuI	GTATCC	1 cut(s)	1071
BsuRI	GGCC	1 cut(s)	814
BtsCI	GGATG	1 cut(s)	910
BtsI	GCAGTG	1 cut(s)	924
BtsIMutI	CAGTG	3 cut(s)	408, 822, 924
Cac8I	GCNNGC	1 cut(s)	795
Csp6I	GTAC	4 cut(s)	594, 740, 839, 958
CspCI	CAANNNNNGTGG	2 cut(s)	868, 903
CviQI	GTAC	4 cut(s)	594, 740, 839, 958
DpnI	GATC	5 cut(s)	71, 146, 274, 407, 490
DpnII	GATC	5 cut(s)	69, 144, 272, 405, 488
DraI	TTTAAA	1 cut(s)	390
DrdI	GACNNNNNNGTC	2 cut(s)	137, 159
DseDI	GACNNNNNNGTC	2 cut(s)	137, 159
Ecl136II	GAGCTC	1 cut(s)	518
Eco130I	CCWWGG	1 cut(s)	148
Eco24I	GRGCYC	2 cut(s)	520, 669
Eco31I	GGTCTC	1 cut(s)	109
Eco53kI	GAGCTC	1 cut(s)	518
Eco57I	CTGAAG	2 cut(s)	432, 809
EcoICRI	GAGCTC	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	845
EcoRII	CCWGG	1 cut(s)	768
EcoT14I	CCWWGG	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	520, 669
ErhI	CCWWGG	1 cut(s)	148
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	3 cut(s)	142, 492, 938
Fnu4HI	GCNGC	6 cut(s)	51, 54, 57, 366, 528, 712
FokI	GGATG	1 cut(s)	917
FriOI	GRGCYC	2 cut(s)	520, 669
Fsp4HI	GCNGC	6 cut(s)	51, 54, 57, 366, 528, 712
FspBI	CTAG	2 cut(s)	149, 876
GluI	GCNGC	6 cut(s)	51, 54, 57, 366, 528, 712
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	814
HapII	CCGG	2 cut(s)	696, 1064
Hin1I	GRCGYC	1 cut(s)	951
HincII	GTYRAC	1 cut(s)	760
HindII	GTYRAC	1 cut(s)	760
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	6 cut(s)	40, 75, 83, 237, 256, 752
HpaII	CCGG	2 cut(s)	696, 1064
HphI	GGTGA	1 cut(s)	998
Hpy166II	GTNNAC	4 cut(s)	623, 740, 760, 910
Hpy188I	TCNGA	5 cut(s)	74, 109, 213, 272, 568
Hpy188III	TCNNGA	5 cut(s)	142, 260, 425, 521, 1012
Hpy8I	GTNNAC	4 cut(s)	623, 740, 760, 910
Hpy99I	CGWCG	2 cut(s)	140, 953
HpyAV	CCTTC	2 cut(s)	639, 856
HpyCH4III	ACNGT	6 cut(s)	136, 156, 377, 421, 662, 707
HpyCH4IV	ACGT	1 cut(s)	951
HpyCH4V	TGCA	4 cut(s)	714, 776, 917, 1046
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 524, 923
HpySE526I	ACGT	1 cut(s)	951
Hsp92I	GRCGYC	1 cut(s)	951
Kzo9I	GATC	5 cut(s)	69, 144, 272, 405, 488
LmnI	GCTCC	2 cut(s)	362, 515
Lsp1109I	GCAGC	3 cut(s)	352, 539, 698
MaeI	CTAG	2 cut(s)	149, 876
MaeII	ACGT	1 cut(s)	951
MaeIII	GTNAC	2 cut(s)	749, 890
MalI	GATC	5 cut(s)	71, 146, 274, 407, 490
MboI	GATC	5 cut(s)	69, 144, 272, 405, 488
MboII	GAAGA	6 cut(s)	15, 140, 214, 458, 791, 956
MflI	RGATCY	3 cut(s)	144, 272, 488
MhlI	GDGCHC	2 cut(s)	520, 669
MluCI	AATT	2 cut(s)	716, 845
MlyI	GAGTC	1 cut(s)	746
MmeI	TCCRAC	2 cut(s)	132, 476
MnlI	CCTC	6 cut(s)	37, 214, 670, 673, 826, 977
MseI	TTAA	6 cut(s)	233, 249, 266, 312, 389, 651
MslI	CAYNNNNRTG	2 cut(s)	195, 899
MspI	CCGG	2 cut(s)	696, 1064
MspR9I	CCNGG	1 cut(s)	770
MvaI	CCWGG	1 cut(s)	770
MvnI	CGCG	1 cut(s)	797
MwoI	GCNNNNNNNGC	3 cut(s)	56, 524, 923
NdeII	GATC	5 cut(s)	69, 144, 272, 405, 488
NmuCI	GTSAC	1 cut(s)	749
NspI	RCATGY	3 cut(s)	888, 1036, 1053
PasI	CCCWGGG	1 cut(s)	769
PciI	ACATGT	3 cut(s)	884, 1032, 1049
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PfeI	GAWTC	5 cut(s)	40, 75, 83, 237, 256
PflFI	GACNNNGTC	3 cut(s)	134, 755, 950
PkrI	GCNGC	6 cut(s)	52, 55, 58, 367, 529, 713
PleI	GAGTC	1 cut(s)	746
PpsI	GAGTC	1 cut(s)	746
PscI	ACATGT	3 cut(s)	884, 1032, 1049
PsiI	TTATAA	2 cut(s)	858, 968
Psp124BI	GAGCTC	1 cut(s)	520
Psp6I	CCWGG	1 cut(s)	768
PspGI	CCWGG	1 cut(s)	768
PsuI	RGATCY	3 cut(s)	144, 272, 488
PsyI	GACNNNGTC	3 cut(s)	134, 755, 950
RsaI	GTAC	4 cut(s)	595, 741, 840, 959
RsaNI	GTAC	4 cut(s)	594, 740, 839, 958
RseI	CAYNNNNRTG	2 cut(s)	195, 899
SacI	GAGCTC	1 cut(s)	520
SaqAI	TTAA	6 cut(s)	233, 249, 266, 312, 389, 651
SatI	GCNGC	6 cut(s)	51, 54, 57, 366, 528, 712
Sau3AI	GATC	5 cut(s)	69, 144, 272, 405, 488
SchI	GAGTC	1 cut(s)	746
ScrFI	CCNGG	1 cut(s)	770
SduI	GDGCHC	2 cut(s)	520, 669
SfcI	CTRYAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	2 cut(s)	195, 899
SmlI	CTYRAG	1 cut(s)	633
SmoI	CTYRAG	1 cut(s)	633
Sse9I	AATT	2 cut(s)	716, 845
SsiI	CCGC	4 cut(s)	50, 53, 56, 797
SspMI	CTAG	2 cut(s)	149, 876
SstI	GAGCTC	1 cut(s)	520
StyD4I	CCNGG	1 cut(s)	768
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	6 cut(s)	136, 156, 377, 421, 662, 707
TaiI	ACGT	1 cut(s)	954
TaqI	TCGA	2 cut(s)	78, 669
TasI	AATT	2 cut(s)	716, 845
TatI	WGTACW	2 cut(s)	739, 838
TauI	GCSGC	3 cut(s)	53, 56, 59
TfiI	GAWTC	5 cut(s)	40, 75, 83, 237, 256
Tru1I	TTAA	6 cut(s)	233, 249, 266, 312, 389, 651
Tru9I	TTAA	6 cut(s)	233, 249, 266, 312, 389, 651
TscAI	CASTG	3 cut(s)	415, 822, 924
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	3 cut(s)	365, 527, 711
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	5 cut(s)	96, 242, 798, 858, 1044
TspGWI	ACGGA	2 cut(s)	689, 737
TspRI	CASTG	3 cut(s)	415, 822, 924
Tth111I	GACNNNGTC	3 cut(s)	134, 755, 950
XapI	RAATTY	2 cut(s)	716, 845
XceI	RCATGY	3 cut(s)	888, 1036, 1053
XcmI	CCANNNNNNNNNTGG	1 cut(s)	542
XmaJI	CCTAGG	1 cut(s)	148
XspI	CTAG	2 cut(s)	149, 876
ZraI	GACGTC	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.